RNA id: XM_021609848.2


Basic Information

Item Value
RNA id XM_021609848.2
length 2093
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110528057
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68852438 ~ 68874903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCGGGCAAGTAAAAGCGGTGAAGTGGGCAGTCCTTTCTGTAGTGGACCTGTCGCACAAGATATTTAGCATAAAGTCAGTCCCCCGCTGTATGGGGATCAAGCCTTCACTCTTCGACTGCCTTCATGTCTGACAGCATTGAAAGAGGGAAACTGACGATTTTTTACTTTACAAACAGAGGAACTTTCTTCATGTCAGCAACATCTCATTCGGACAACCATTAACCCACATCAAGCTTGCCTTTTCGGGGGATTAATTTAACCAGACCGGGATTTCATAGCCTGGCGGCCGAGGTTATGGATTTTAACCTTCTGACAGACAGTGAAGCCCGTAGCCCAGCGCTATCGCTTTCAGACTCTGGGACGCCTCAACATGATCAGGGATGCAAAGGCCAAGACAACAGCGACACAGAGAAGTCCCACCAGAACCAGACAGATGAGTCGAATGCAGAGGACGGCTCTCTGAAGAAGAAGCAGCGCAGGCAGAGGACCCACTTCACCAGCCAGCAGCTTCAGGAGCTGGAGGCCACCTTTCAGAGGAACCGCTACCCCGACATGAGCACACGGGAGGAGATTGCCGTGTGGACCAACCTCACAGAGGCACGAGTTAGGGTATGGTTTAAGAACCGCCGTGCCaaatggaggaagagggagaggaaccaACAGGCTGAGCTGTGTAAAAACGGTTTCGGTGCCCAGTTCAATGGACTAATGCAGCCCTATGATGACATGTACTCTGGCTACTCATACAACAACTGGGCCACCAAGAGTCTGGCCAGCAGTCCACTGTCAGCCAAGAGCTTCCCCTTCTTCAACTCCATGAATGTAAGCCCCTTGTCCTCCCAGCCCATGTTCTCCTCCCCCAGCTCTATCCCCTCCATGAACATGGCCTCCTCCATGGTGCCCTCGGCGGTGGCCGGGGTGCCCGGCTCGGGCCTCAACAACCTGGGCAACCTGGGCAACCTCAATAGCTCCACGCTGAACTCGGTGGCGGTCACCGCCGCCACCTGCCCTTATGCCTCCACTGCAAGTCCTTACATGTACAGAGACACCTGCAACTCCAGCCTGGCCAGCCTCCGACTGAAGGCCAAGCAGCACGCCAACTTTGCCTACCCAGCCGTGCAAAACACAGTCTCCAACCTAAGCCCTTGCCAGTATGCAGTGGACCGGCCGGTATGAAGACATGTACCCACTCCCACCCACCCAGCCTGCCCTGTACCCCCCAACCTCTCAGACCCactgcccccctctccctctcctcctcccggtCCCTGCTATGCTCCATCAGTGAATCAGAGTTAACTgcacacatcatcatcaccatggaCTAGTTAACAAGACGCTGTTTGTCTAACTGATGCTACACAACAGGAATAAGCTTTAACAGTTAGAAGAaaatcccctgatggaccaccaCGCTTCAAAGAACTCTCTCAAATACGCTGAGACTTTGTCGCTGAACCGACCAACTGTCAAAAAGGATTTCTAAGTTTAATCCAATATCATTTTTTTGGGACTGCATGACTCGAGTGAATTTAAAATGAAGAAAACCTGGATGCTTCAACTGCACTGGTGGTCAACATCTTGGCCAAACATGAAGTCATTGTGACGCTTGCCACCATCACAGGAAAATGACCTGTGGTTCCAATATGAGGATGTATATAATggactttttttgttttgtatgtGACAAAACTATCCATGAAACGTAGTACTTTGGAGATGAGAAAAGCATGTTCTTCAAGAGCAGACCCTAGGTTGATGTACTATGAGTACCTCCTTTAGGAATTGTAATTTTGTTATGAATTCCAATCCCCTCAGAAGATCAGGTGTCAAAGGTcagaacagaaaggagagaggagctaGCACAACGTAGTCTCAAACAGAAGAAATAATATCCAAAATCAGAACCTTTTTGAAGAAAAGTCTAAAAAAGCCATTGAATATATAGATTTGTGTGGTGTTATAAAAAGGGAGTCCATGactgtaaaaatgtatgtaaGAGTGCAGTTGTTATAAAACAAGCCTTTTTTCCTGGTGTAGCCTGCTTTGTCTCATTAACATAATAAAAATGATGTGTTTTTATGAACAACA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0021984 adenohypophysis development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09357 PITX3; paired-like homeodomain transcription factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84297 lncRNA upstream 92598 68759542 ~ 68759840 (+) True G76264
TU84274 lncRNA upstream 125303 68726917 ~ 68727135 (+) True G76241
TU84259 lncRNA upstream 143253 68708864 ~ 68709185 (+) True G76226
TU84246 lncRNA upstream 154583 68697407 ~ 68697855 (+) True G76213
TU84245 lncRNA upstream 155155 68697054 ~ 68697283 (+) True G76212
TU84505 lncRNA downstream 20883 68895786 ~ 68896169 (+) True G76439
TU84509 lncRNA downstream 26604 68901507 ~ 68901737 (+) True G76443
TU84523 lncRNA downstream 47265 68922168 ~ 68922377 (+) True G76457
TU84524 lncRNA downstream 48038 68922941 ~ 68923247 (+) True G76458
TU84567 lncRNA downstream 49602 68924505 ~ 68924725 (+) True G76498
XM_021609836.2 mRNA upstream 83273 68762793 ~ 68769165 (+) True LOC110528049
XR_002474182.2 mRNA upstream 204882 68645772 ~ 68647556 (+) True LOC110528033
XM_021609567.2 mRNA upstream 304041 68519794 ~ 68548397 (+) True LOC110527930
XM_036983666.1 mRNA upstream 357348 68486914 ~ 68495090 (+) True LOC118965305
XR_005053624.1 mRNA upstream 397545 68454837 ~ 68454893 (+) True LOC118966747
XM_021609953.2 mRNA downstream 344819 69219722 ~ 69243901 (+) True LOC110528130
XM_021609964.2 mRNA downstream 380491 69255394 ~ 69266554 (+) True LOC110528139
XM_021609975.2 mRNA downstream 393355 69268258 ~ 69287876 (+) False LOC110528148
XM_036983933.1 mRNA downstream 393490 69268393 ~ 69287876 (+) True LOC110528148
XM_021610021.2 mRNA downstream 500883 69375786 ~ 69385855 (+) False edaradd
TU83729 other upstream 477509 68374505 ~ 68374929 (+) True G75747
TU81938 other upstream 2067469 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 2093454 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 2428357 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 2563969 66287679 ~ 66288469 (+) True G73515
TU86384 other downstream 1696762 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 2161567 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 4676713 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 4696163 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 6034322 74909225 ~ 74909806 (+) True G83836

Expression Profile