RNA id: XM_036983878.1


Basic Information

Item Value
RNA id XM_036983878.1
length 5968
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110528078
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68941572 ~ 68989407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaatGATTCAGACTGGCAAGTAAACAAGGACAAACTGCATGTGTAACTGTTTAGGGGAGACTCAAGGAAAAATAAAACAGCTGGGCATGATGACTGAGAAAGAATCGGCAACAGACAACATAATAGCAGATGCAATGGCAACTCCCTCTCCGGCAAAGAGCATGGGTGACCCTGGCATCACCCCACTGTCACCCTCACACATTCAGCAAAATGACACGGACTCGAATGCCCACACGGGACCTTCGTTCATCGTGGTGGTTGCTGTCGACTTTGGCACCACTTCCAGCGGCTACGCTTACGCCTTCACTAAGGAGCCAGAATGCATTCACACCATGAGACGCTGGGAGGGCGGCGACCCCGGAGTATCCAATCAGAAGACGCCTACCACCATCCTCCTGACCCCGGACAGGAAGTTCCATAGTTTCGGCTACGCAGCACGTGACTTTTACCATGACCTGGATCCAACCGAGTCCAAGCACTGGCTCTACCTGGAGAAGTTCAAAATGAAACTCCACACCACTGcgAATCTCTCCATAGACACAGAACTCCATGCAGCCAATGGGAAGCGAGTAAAAGCTATTGATATTTTTGCATATGCTCTGGCGTTCTTCAAGGAACAAGCACTTAAGGAGTTAAGTGACCAGGCGGGTGCAGAGTTTGACAACACAAACATCAGATGGGTCATCACAGTGCCAGCCATCTGGAAAATGCCAGCCAAGCAGTTCATGAGGGAGGCAGCCTACAAGGCTGGCTTGGTTCCCCGTGACACCCCAGAGCAGCTGATCATTTCCCTTGAGCCTGAGGCAGCCTCCATCTACTGCCGCAAGCTCCGCCTCCACCAGATGATTGACATTGGCACCAAGACCACCCAGAATGGTTTCAGCCCCAATGAGAACGTGGGGGCAGGGATGACCCAGGGTGACACCTATGTGGTGGTTGACTGTGGTGGCGGAACGGTTGACCTCACGGTCCATCAGATACAGCTCCCCGAGGGACATCTCAAGGAGCTCTATAAGGCCTCAGGCGGTCCTTATGGCTCCATTGGTATTGACTATGAGTTTGAGAAGCTCCTGTGTAAGATCTTCGGGCCCGACTTCATCGACCAGTTTAAGATTAAGCGGCCGGCTGCCTGGGTGGATCTGATGATCGCGTTTGAGTCCAGGAAACGGGCGGCGGCCCCGGACAGGACCAACCCCCTGAACATCAACCTGCCCTTCTCCTTCATCGACTACTACAAGAAGTTCAGAGGTCACAGTGTGGAACACGCCCTGCGCAAGagcaaTGTGGATTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGAATGAACCCTGATGCCATGAATGCCCTCTTCAAGCCCACAATAGACCACATCATTCAGCACCTCACTGACCTCTTTGATAAGCCGGAGGTGTGTGACATCAAGTTCCTGTTCCTGGTGGGCGGCTTCGCTGAGTCGCCGCTGCTGCAGCAGGCGGTGCAGAACATGCTGCATGGCCGCAGTCGCATCATCATCCCCCACGACGTGGGCCTCACCATCCTCAAGGGGGCCGTCCTCTTTGGCCTGGACCCCAGCGTCATCAAGGTGCGCCGCTCGCCCCTCACCTACGGCGTGGGCGTCCTCAACCGCTACGTAGAGGGCAAGCACCCACCTGACAAGATGCTGGTGAAGGACGGCACGCGCTGGTGCACCGATGTCTTCGACACCTTCATTGTGTGCGACCAGTCCGTGGCCCTGGGCGAGACGGTGAAGCGCAGCTACACGCCTGCCAAGCCCAGCCAGCAGGTCATCATCATCCACATCTACTGCTCGGAGAAGGAGGGCGTGGGCTTCATTAGCGAGCCGGGCGTGAGGAAGTGCGGCACGCTGCGGTTGGATGTGACTGGTACGGAAACCAGCGCTGCACGCCGTGAGATCCAGACGCACTTGCAGTTCGGGGACACGGAGATCCGGGCCATGGCGGTGGACGTGGCCACCTCGCGTACTGTCAAGGCTAGCATCGATTTCCTCGCTCAGTAAATAGGGTGACAGAACCAGAGGGTCAAAATGTCATAGGAAGTGAAATCTCCAGCAGCACAGCACACAATGAACCAGAGGACAGTGGCTAGAATTCTGTAGCAGTATATTGATCTTTAGGCCTGTTCAAATTCCCTGTAGCATGATAAGTGCTAGTTTGTTTCTGCTTTAGCTAACTCCTTGGTCAGAAACAAACAAGCTCTCAGGTTTTCTACCatctgtgtatgtactgtgtcTAGTCTTAAATGCAGGCTATATTGATGTGCTCTGCTCTAGAGATTTACACAGACTTGCAGATATTGCTACTGATACATGCAGCCTTGTTTCAGGGTTCATTGTGTGTTATCTGTAGTTGTGTGCTGTAGCTGTTTTAGGTCATGGTAGATGGATACTgtagtggatactgtagtacTCCTCTTACAGCGACAACATCATGCTATGACACAATGCTGCACAAACCTCAGTGTCCTCTTCAACCCTGGCTCATGGGGCCGTCTTTTCATAACTCCTATGATTATTAAGACATTTAAAACCAAACCCCTGGGGCTTCCATGAACATGCAGTTATATACACTAGCATTCAGATACTTAACctactcatcagaccagagttgTGAGTCATGGTTGGAGACCACCTGAGATTACGAGGGAAGGCAGTGGTTCTCCAACAAAAACAATCCATTTGATCCGTTTTCAACAGTAAAACGttacagcaggggtgtcaaactcattccacggagggccgagtgtgtgcaggtttttggtttttcctttcaattaagacctagataacccggtgaggggagttccttactaactAGTGACCTTGATTAATccatcaagtacaagggtggagcgaaATCCCGCAGACACTCGTCCCTCCGTGGAATAAGTTTGACACGTGCTTAACAGGGTAGCTTTCGAATCTGTATTTATCTCTACCGTCTCCTGTGGGTCGGCCCAAGATGTCATAAAAAGGAGTTCTATTACCATACGAAAACAAACTTGGTGCATTAGCTTTAAAAATGTTTGGTCAAATTTAGTCAGACAGTCTCCTATCCTGTCAACAATATATGTTTAATGGTTTATTGTGTACTGCGAACAAATCTGTGTTGGAAATATAGAGAGACTAACAGCCATCTGTTTAGACACCAGGCTAAAGACATTAATTTCTCACAAACAACGTAAAAATCCACCTCACTGGTTAATATGTTGCGCTGATCCACAGCCAAATATATATCCTTGAATGTGAAAAGTGGCAGAGTTGACAATGCTGCTAGCTGAACCTGCAAACTGATTTGAATATAACCATTGCCATGTGCTTTGTGCTTTGTTGTTGCCTTCATTTGTTATGCTTATGATTCAACGGAGGACAAAAAGCCACTTAATTTCCTTTTTGAATATTTCATATTCCGGAGATTTCTGTACAATTGCAGGCCCTTAAAAAGGAAAGATTACATTGAAAATATGTTTATTCCTGTAAATACAGTATTTAAATATTGTACAGATTTTTTGCGTTATTATTTTAGCAGCTTTAGAACAGAGAGTGTGTGCTTTCACGCAGACACCTTATTTCATTATTCTCACCAGCCATGCATGGCATGTGTCAAGGCAGAATTTGAATGGCATATTCATCAACAATGAGTGAAAGTGAACGTTGCCTGTGTGTTGCTCTGCGATTGAAAAAAGAAACTTGAATACCTTTGCCCTTAAAACATGAGTGGTTATTGTTATGGAACATGTAGTTTCTTTGGGTTGGGAAAAccctttttaattttttaattttattaaatgtttttattgatATTGGTAAGACAGGTACACATGGACAAGAAACAAGTGACAAAACCAAACAGGACAAAGATTTCCCCTCCCACAGAACTTCCCTAACCCATAGTATGATTAGTGGTTCACAGTAGCAGTCTACAGTCATGCGCTGATGAAAGAGCAATTACGTTTCTTTCACTaccgatgtaggatcttaatttgatccctcttttgttgatgagaattttcctgcacagcaggaagTGCAAATTTGTAGTATATTCAAAGTTTCAGACTCGATTTGCCCTAATTTAAAATGTATCATaccctacaaaaaatgtccattaattataaacCACATAGtaatttacatttcctgttgctgctggATTATTTgacaaattgactcaaattaagatcctacatctgcagcCTCATGCATACGTGCTACAGATATTTCCATGTGGGTAAATCATTTTGTTTGCTGTGCAACTGTCAATTTGTATTTAGTttagattacattttttaaatgggtTTGGTTTATGAAAAACCTGCATTCTGGTTTATGAAAAACCTGTATTCTACATTCAAATGATCGATAGTAAATCTTTGTTGGCTCTTTCTAATGACAGTAATTGCCAATTCAAAACTATCCTTCAACCACCCTGCAAATAATATAAAGTGACAGTTCCAAATCTCTGCCCTTCTCTCCCAAACAATAGTAATACAAGAGCAATAACACCTTGCAATTACAAGGTGTTGTTCCTTACCACGATTTAACACAACCGTCAAACATTTTTGTGTTGTGCTTCCATTTTAAATTTGCTTCAAGGCTGCAGCTACTGGAAGCTGCTGTTGAAAGCATTATCCCCTAAATCAAGTATCGATGGAAGGAAACAGCTAAATAAAAACAACTTGATATTTAAAGATTGTGAAAATCTATAACCTTGTTCAATGAAAAATAAAGATACAATTAATAGCTTTGCAAGTTATAGCGCAGACAATGCAGGATAACCTTATTTGAAGGTTTATGGTCTTTCTTCAGTGTTCCTCTATGAGAACCCTACACTAAGGGGTTTAAAACTCATTTAAATGAGATCTTCACGGAAAACTCTGAATTTAGGTTGGTCTCCCGTTGATTTGTTGATGTGAAAAAGTGCACAAGCTTTGATCTATGATGCTGCCTATGGCACTCTCCTGCAATGCACGTTTTGCATGAGTAACTCTTTACGAATGGTGAGAAAACATCATTTCTAACAACACTTTTTTAGGTTTGAGGTTTAGGTGTGGTGATAATGTTACACCACCATGTGTGGAGAAAAGTGTGGCCTTTTCAAATCCAGATGCAATGACAAATGAACCATTAACTGTGAAGGCAACATTTGTACATGTCCCAATCACTCATCTCACCCACTGTTATCAGAGCAAATCTGTTCAATCTATGGAAAGCCCTGCAGTGCTTTCTCCATCCTAATAACTAATATCATATTAATCTATATGTCATGTTAATCTAGCTGCACCTTCCCCATCTCCACCATTATATGGAGGTCAATGTATGACTACTAAGTTGAAGGAAATAAAAATACATCATTTTGTTTCTTTCATGTATTTCTACTTTGATAAATACCATGTATTTTGTGCAGCCGCCAGTATATTGTAATGCACAAGATGCACAAGATGCTGTATGTAGTTGCTTTACTGTGTACTCAAAGCTATGTCAGAATTGTATGTTTAGCTAAAGTTTGCATTGTATGTAGTTTATAATGCAGAAGAAGATGACAACTGGCACGCTAAAGAGAGTAAATATGTTGAATTCTATGGTAATTTATGAATCTGGAGTTGAATGGGTGGATAGGCAATTAAGGAGCATAATTGTAGCTAGCTTCTGCATACCAAAATAGAAAGTGCTTAACTCTTAATCTAGATTTTACAATATTACAGGACATACACGTTCACTGCTACTTGATTCTGTGCTTGTTGTAGAACAAGTGACTTCACTATTCTGCCAAATTTGACATTCTTACTTAATGTTTCACAAATCACACATTTTTCAGTTTCTCTTTGGGTTGACGCACATGTGATTTTTCTACTGTTGAGTTACAAGTCTCCTGCTCTTACCATTTTAACTCAAATGTGTTGTATCCACAGCCAAACTGTCATCCAATAAAATGTAGGTGTATTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84570 lncRNA downstream 1817 68939536 ~ 68939755 (-) True G76500
TU84568 lncRNA downstream 3490 68931237 ~ 68938082 (-) True G76499
TU84531 lncRNA downstream 19627 68909178 ~ 68921945 (-) True LOC110528072
TU84561 lncRNA downstream 40694 68900628 ~ 68900878 (-) True G76492
TU84560 lncRNA downstream 41656 68899654 ~ 68899916 (-) True G76491
TU85226 lncRNA upstream 92771 69082178 ~ 69095125 (-) True shtn1
TU85396 lncRNA upstream 314345 69303752 ~ 69304024 (-) True G77235
TU85438 lncRNA upstream 374824 69364231 ~ 69364549 (-) True G77276
TU85439 lncRNA upstream 376204 69365611 ~ 69366130 (-) True G77277
TU85441 lncRNA upstream 379865 69369272 ~ 69369557 (-) True G77279
XR_002474184.2 mRNA downstream 18266 68910098 ~ 68923306 (-) False LOC110528072
XR_005052641.1 mRNA downstream 18266 68910098 ~ 68923306 (-) False LOC110528072
XM_036983850.1 mRNA downstream 92903 68769225 ~ 68848669 (-) True LOC110528038
XM_036983858.1 mRNA downstream 92904 68769225 ~ 68848668 (-) False LOC110528038
XM_021609911.2 mRNA upstream 57538 69046945 ~ 69070919 (-) False shtn1
XM_021609890.2 mRNA upstream 57538 69046945 ~ 69095229 (-) False shtn1
XM_021609902.2 mRNA upstream 57538 69046945 ~ 69095234 (-) False shtn1
XM_021609923.2 mRNA upstream 107474 69096881 ~ 69141094 (-) True atp6v1ba
XM_021609940.2 mRNA upstream 180113 69169520 ~ 69179563 (-) False vax1
TU84152 other downstream 251343 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 363828 68575593 ~ 68577744 (-) False LOC110527951
TU83653 other downstream 729866 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 779570 68157961 ~ 68162002 (-) True sdhaf4
TU83339 other downstream 1259842 67669589 ~ 67681730 (-) True LOC110527687
TU86507 other upstream 1093433 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 1093433 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 1093433 70082840 ~ 70085009 (-) False LOC118965321
TU86510 other upstream 1096531 70085938 ~ 70087657 (-) False LOC118965321
TU86511 other upstream 1096531 70085938 ~ 70088714 (-) True LOC118965321

Expression Profile