RNA id: XM_021609953.2


Basic Information

Item Value
RNA id XM_021609953.2
length 2958
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110528130
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69219722 ~ 69243901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGGAGAAGGATACCCGACAGCTGACAGGACATTCAATTCTCTGCAAACCTACTGTAGGAGGAACATTAACTAACCATGTTGAAGAGAGAGGTTATGACCTACCAGAGCCTGACAGTTACCGTACTCCGAGCAATAAACAACTGCTCTCATGATTATTgGTCTGAGTCCGACTGTTATGTTACTGTAGGTCTCCCCACAGCGTCTGCCAGGACCCTCTGTACTAAAACTGTGCCCAACAGCAAGACCCCAGAGTGGAATGAGAGTTTCCAATTCAGGGTCCACAGTCACGTCAAGAATATCGtggagttgaaagtgtacgatgAGGACAGTTTCATTGGCAATGACGATGACCTGTGCTCCACCGTAGTGTTTGACATCAATAACCTCATCCCTGGGAAGAAGGAGACCAAGACCTTCATCTGTGAACCGACCAAAGATGAATTGTGGGTTGAGTTTGAGTTGCTGGAGAGTAAAGAGCCTGCTGGCGAGTATCTCTCTAATGGTGTACTCGTGGCCTCCCCATTCTCTACTGTGGATGTGAATATAGAAAAGCTGATGACCACTGCCATGGAGCAGAATGTGGTCCTGAAAATGAGTGGGGCCTTTCCAGAAGAGCATAAGATTCTTGCTCCTCAAAAAACATCCAACCTGACCAAAACTCTGCGCTACTACATCAACAGAGACCTGGAGACAGAGCTTTGCGTGAGGGATAAATTGGGTGAGGTAGAAGATCCAAATGTCACTGGCTTATCTACTGTTCCACTCCTGCAACTTCCAGCCAGTAATGATTTCAAAGTATCTTTACCTGTGGGAGAGGACATGGTGGATCTACATTTGAGAACAGAGGACTGCCCAGACATTGAATTTGAGGTGCGTCTTGATTTTGACATCCCTTCGGAGGAAAAAGAATTCCTGAATAAGAGAAAGGTGCTAGTGGGTCAGGCCTTACGAAAAGAGTTGGGTCTCACCTCTCCTCCTGACCCTAAAAAGTTGCCTGTTGTAGCTGTGGTTGGCTCAGGGGGAGGGACCAGAGCAATGACCGGCCTGTATGGCAGTCTGAAGGGGCTGCAGAGACTGGGCCTACTGGACGCTGTGAGCTACATCACTGGTGTGTCAGGCTCCACATGGGCCTTAGCCACCCTGTATCAGGAAGCAGATTGGTCACAGCGTGATATGGATGAGTCCATCTCGGCTATGGAGGAGGAAATCACCAAGAGTATCCTCAGTGCCTTCACCACTGAGAAGCTGCTGTACTACAAACACCAGAtggcagagaaagagaaggagggacatATGGTGTCACTCATAGACATGTGGGGTCTGGTCATTGAGCACTGCCTTCATGGGAAGAAGAAAACCAGTACCCTGTCTGACCAGCAGAAGGCAGTATCAGAGGGCCAGAACCCTTTACCCATCTGTACTGCTGTCAACCTAAAGGACGGAGCGAAAGGCACCACAACAGAGTTTGAGTGGTGTGAGTTCACACCATATGAGGTGGGCTTCCCAAAGTATGGGGCCTATGTCCATGCGGAGGACTTTGGGAGTGAATTCTACCTTGGTCACCTGGTCAAGAAACATCCAGAGATATGTATCGCCTCTCTGCTTGGtctttggagcagtgtcttctctCTTAACCTGACCCAGCTTTGGGACTTTGCAACTGGAGGTCAAACATCCTGGAGCACATGGCTGGGGGAAGAAGTCAACAAAATAGAATTTGACAATGAACCAACCACCCTGGACACCTACCTCTTCAAGCCTATCACTAACACTGCCTCAGCGCTGACCAGCTTCTTTACCAGCCGGCCAGTCATCACTCAGATCTACAACTTCATGCGTGGGTTCTTCCTGCACCGGAACTACAATGACAACAGCAACTTTACATCCTGGAAAGATATGCATCCAGATGCCTTCCCCAACAGACTGACTCCAGCTGACCCCACACTCTACCTGGCGGACTCTGGGTTCTCCATCAACACAGGCTGTCCCCCTGTCTTGAGACCAGAGAGGGGTGTTGATATCATCATGTCCCTCAACTATTCGTGGTGTGAGGACCAATTCAAAGTCCTAAAGAGGACTGAGGTTTACTGCAAAGACCACAGCATCCCCTTCCCCCGCATTGACTTCAGCAGCCTGGAGGGACAGCCCCTGAAAGAGCTCTACATctttgaggaggaggagaaccccAAGGCTCCCATAGTCCTTCACTTCCCTTTAGTCAACATCTCATTCAAAGAGTTCAAGGCCCCTGGTGTGGCACGtaagggtgaggaggagaggaaggcagGGGATGTTGACATTAGCTCAAGCAGCTCCCCCTACCTCACTAAACATCTCACCTACACAGCAAAGGACTTCCGAGCACTGACAGACCTTACCTCATACAACATCCAGAACAACAAGGAGCAGATCCTCCAGGCTCTCGGGAAGGTCCTCGAAAGGAAGGTGCCTGTGGAAGAATCAGACCACCATGAGCAGCACTCATATCATTGAACAGGGGCCCTtccatggaggaagagagagaacaacatGCATACAGAGCAGATTTAGAGGAGCAACTCTAACCGCAATTTCTTGGTGGTGCGTCCTAAGCCGTGTTTCTAAACGTTTAAAGGGGAGAATGCATTTTGTTGTAACTTTGAGTTCTTGTTTCCGAGCTCGTGGGTTGTTTTTCTAGACTGTCTTTTTTTACATTCTACCTTTATGAACCTTACTGTATGTTTCATATTATGAATTGTATCTTGTTGAGTTCATTTTAGCACAGAACTCCTGTGTGTTTATACACACATAGTATTTTCTCTCTTGGAGGTTATTCTGGAGACACATGTAACCACGTTAAATCGTATTCCTTGATAGTAATTTACTCTGCTTTATTATGTACCATGTCTTCAATGTATACTGTTGTTGTTTGAAAGTTAATTAATTCATGACTAATAAATCTATTAGTTGATTTGA

Function

GO: NA

KEGG:

id description
K16342 PLA2G4, CPLA2; cytosolic phospholipase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84691 lncRNA upstream 78652 69107246 ~ 69141070 (+) True G76607
TU84633 lncRNA upstream 146804 69027008 ~ 69072918 (+) True G76555
TU84572 lncRNA upstream 273577 68941357 ~ 68946145 (+) True G76502
TU84567 lncRNA upstream 294997 68924505 ~ 68924725 (+) True G76498
TU84524 lncRNA upstream 296475 68922941 ~ 68923247 (+) True G76458
TU84803 lncRNA downstream 17597 69261498 ~ 69328349 (+) True G76702
TU84883 lncRNA downstream 126954 69370855 ~ 69371174 (+) True G76776
TU84885 lncRNA downstream 129833 69373734 ~ 69374113 (+) True G76778
TU84878 lncRNA downstream 142051 69385952 ~ 69386083 (+) True G76771
TU85063 lncRNA downstream 391305 69635206 ~ 69635463 (+) True G76922
XM_021609848.2 mRNA upstream 344819 68852438 ~ 68874903 (+) True LOC110528057
XM_021609836.2 mRNA upstream 450557 68762793 ~ 68769165 (+) True LOC110528049
XR_002474182.2 mRNA upstream 572166 68645772 ~ 68647556 (+) True LOC110528033
XM_021609567.2 mRNA upstream 671325 68519794 ~ 68548397 (+) True LOC110527930
XM_036983666.1 mRNA upstream 724632 68486914 ~ 68495090 (+) True LOC118965305
XM_021609964.2 mRNA downstream 11493 69255394 ~ 69266554 (+) True LOC110528139
XM_021609975.2 mRNA downstream 24357 69268258 ~ 69287876 (+) False LOC110528148
XM_036983933.1 mRNA downstream 24492 69268393 ~ 69287876 (+) True LOC110528148
XM_021610021.2 mRNA downstream 131885 69375786 ~ 69385855 (+) False edaradd
XM_036983953.1 mRNA downstream 131886 69375787 ~ 69385855 (+) True edaradd
TU83729 other upstream 844793 68374505 ~ 68374929 (+) True G75747
TU81938 other upstream 2434753 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 2460738 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 2795641 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 2931253 66287679 ~ 66288469 (+) True G73515
TU86384 other downstream 1327764 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 1792569 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 4307715 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 4327165 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 5665324 74909225 ~ 74909806 (+) True G83836

Expression Profile