RNA id: XM_021610006.2


Basic Information

Item Value
RNA id XM_021610006.2
length 5803
RNA type mRNA
GC content 0.43
exon number 5
gene id si:ch211-125o16.4
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69386236 ~ 69400573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTCCAGCTCAGGTGGTGGTCAGAGAAGGCATTTAACTGACAGATCCTCTTAAATTGACAGAACAGCTGAGGTACAGAGGAGACAACATTGCCTGGGCTTTTGGAGGACTCTAAGACGTTGACAAGgTTATAGTGAACATTTTTCTTGATATGCTGCTGTAAATATACTTCAGAAATCATGAATGGGGAAAGTCAGCAAAGACGTTATTCCGAAAGCTTGGTCCTGGAGGATTCAGACAGAGGAGGAGTTGTCATCACTGGAATCACAGACCCTAGAGTCACTAATAAGAGTGGCTTGAAAGAAGGCGATGAGATTGTCGCTGCCACCATACATCTTAACCACCTTAATAAAGATGACCTGATGAAAATACTTAAGATCATGGAGCCTTATGAAGACAACATGAGTTTTGTGACAAAGCCGGATCTGAATGCCAGCGTCAGTCTCAGCTCACTGGACAGTGGTCTCAAAAGTCCCGGGGATATGCTCAAAGATACCTACAGCAGAATGCAGCGAGCAGTTGAGGCACCATCTATTGAGGTTAATGGCCTCAATGGACAATTAAATGCAGAAGGCTGGTTGAAGAATGAAATCAATGGTCCCGCTTTGAATGGGGTATTGCCCAATGTGACATTGGACACACCTGGACCTGATGGAGGTGCAAAGTTCCCCACCATTGGAATGTCTGGACCAGTAATGAAAGGAGCAGATCAGGAAGGCACCCTCACACACCCTAAAGTCAGTCTATCAACACCAGAGTTCAGCACTCCAGATGCTTCACTTGACTTGGAGAAACCTGAGGTTAAGACAAGTGGATTGATGTACAAGCCTCCAAAATTCAAAATGCCTCACTTCAAACTACCACACGTAAAAGCCAACGCGCCAAAGGGAGATGTGAATGTATCAGCAGATTTAGAAGGCCCTGGTTTCAGTGGAGAGCTAGAGAAACGAGACCTGAACCTCTCATCCCCTGATGTGGAAATCAAATGCCCAGATTTGAATGGGCCAAATGCTGTCTTGAAAGCTCCAGCTGTTGACATAGAGGCTCCTTCTGGCAAATTCAAATGGCTTACTCTCACAAAGCCCAAGTTTGGATTATCTGGACCAAAAATGAAGGGACATGAAGTGGACATAGATGCTGACCTGTCTGCACCTGACATGAATCTCTCCACTCTAAACATTGATGGAGAGATAAGCGCATCAGATGTAGACTTGAGTATACCAAAAGCTGAGGTAGATCTGCAAGCTCCAGATATCGACATTGAGGCTCTCTCGAGTAAATTTAAATGGCCTCATTTAAATAAACACAAATTTGGTCTTCATGGGCCCAAAGTCAACTCCCCTGGTGTGGATGTTAAGGCAGATCTGGAGAAACCAACAGTTGATCTTTCTGTCCCAAAGATTGAGGCTGAAATGAGCAACCCAGATTTAGAACTGAATTTACCCAAAGCAGACCTCAGCAGCCCTGAGGTAGATGTGAAGGCCCATGTTGTTGATATTCATCCTCCCACTGGGAAACTTAAGTTCCCAACACTCAAAAAGCCCAATTTCAGGCTCTCTGGACCAAATATAAAAGCTCCAGACATTGATGTTGATGCAGATCTGAAGGCACCTgacctcagtctctctgtccctgaagTTGAGGCAGGGCTTAACATGCCTGATTTGCACACCAATTTGCCAAATGCAGATATCAAAGGCCCTGAAGTAGACCTGAACGCATCAGAAGTGGACATTGAGCCCGTTTCAGGGAAATTAAAATGGTTTACTCTAAAAAAAACAAAGTTTGGTCTCTCTGGACCCAAGGTTAAGGGTCTTGAAGAATTGAATCTCGCCCCTCCAAACGTTGATGGAGAAATAAATGCACCAGATGTAGATCTTATTTTACCCAAATCTGACCTGGAAGGCCCAGAGGTAGATGTTGACACTGATGCCCATTCTGGAAAATTCAAGTGGTTCAACCTAAAGAAGCCCACAGCTGATTTGAAAGGTCCAGATGTAGATCTTCAAGCACCAGAGGTCGACATTAAGACACCCTCTGGAAAGCAAAGATTTCCAACTTTAAAAATGCCCACAATTAACTGGACTGGACATAAGGTGAAGGGACCAAAGCTTGATGGTGATCTGAAGAGAGCAGAATTGGACCTATCAGCTCCCAAGTTTGATGTGAATTTACCAGGAGCAGATCCCCAAGGCCTTGATCTTAACCTCTCCACACCATCAATTACAGCAGACATTGCTGTTCCAGATGTAGATCTTCAGGCACCAGAAGTTAACATGGAGGCACCCACTGGAAAGAAACGATTTCCAACTTTAAAAATGCCCAAAATTAACTGGTCTGGACATAAGGTGAAGGGACCAAACCTTGATATTGATGCTGATCTAAAGAAAGCAGATTTGGACCTCTCAGCTCCGGAGGTTGATGTGAATTTACCAGAAGCAGATCTCCAAGGCTCTGATCTCAACCTCTCAGCACCAGCAATTGAAGGAAACATCGCTGTTCCAGATATCAATGTCAGTTTGCCTGAAGCTAACCTCAAAGGACCAGATGTAGATTTAGACCTTGATGCTCCCTCTGGAAAATTTAAGTTGCCAAAACTAAAATGGACAAAAATAAGAAAAGTAAAAGGACCAGAACTTGATGTTGATCTTAAGACCTCAGAATTAGCTGTTGATGTTAATTCACTTGAAGCAGATCTGAAAGGGCCTTGTCTCAACTTGAAAACAACAGATCTCAACCTTTCAGCACCAGCAATTGAGGGAGACATTGCTGCTCCAGATTTCAATACCAGTTTGCCTGAAGTTGACCCTGATGCTCCCTCTGGAACATTCAAGTTGCCAAAATACAAACTCCCAAAATTCAGTGTAATAGGGCGAAGAGTTAAAGGACCAAACCTTGATGCTGAGCTAAAGGCCCCAAAATTGGATGTCTCTGTTCCTGATGTGGACGTCAGTTTGCCGACTGCTGACATCCAAGCCCCTGTAGTTGAGCTGAAAACACCCGACCTGGACCTTTCTGCTCCAAAGATTGAGGGAACCATCGCTGCTCCAGATTTGAGTGTCAGTTTGCCTGAAGCTGACATCAAAGGTCCAGAGGTAGATCTCGACACCCCAGAAGTTGACCTTGATGTTCCCTCTGGAACATTCAAGTTGCCAAAATTCAAACTCCCCAAAACCAGTTTAACAGGACCAAGAGTTAAAGGACCAAACCTTGATGCTGAGCTAAAGGCCCCAAAATTGGATGTCTCTGTTCCTGATGTGGATGTCAGTTTGCAGACAGCTGACCTCCAAACCCCTGTAGTAGAGCTGAAAACACCAGACCTTTCTGCCCCCAAAATCAAGGGATCTATGGCTGCTCCAGATTTGAGGACCAATTTGCCTGAAGCTGGCATTAAAGGTCAAGCGATAGATCTTAAAGCCCCAGAAGTTGATCTTGATGCTCCCTCTGGAACATTCAAGTTGCCAAAATTCAAACTCCCCAAAACCAGTTTAACAGGACCAAGAGTTAAAGGACCAAACCTTGATGCTGAGCTAAAGGCCCCAAAATTGGATGTCTCTGTTCCTGATGTGGATGTCAGTTTGCAGACAGCTGACCTCCAAACCCCTGTAGTTGAGCTGAAAACACCAGACCTTTCTGCCCCCAAAATCAAGGGATCTATGGCTGCTCCAGATTTGAGGACCAATTTGCCTGAAGCTGGCATTAAAGGTCAAGCGATAGATCTTAAAGCCCCAGAAGTTGATCTTGATGCTCCCTCTGGAACATTCAAGTTGCCCAAATTCAAACTCCCCAAATCCAGTTTAACAGGACCAAGAGTTAAAGGACCAAACCTTGATGCTGAGCTAAAGGCCCCAAAATTGGATGTCTCTATTCCTGATGTGGATGTCAATTTACCGACAGCTGACCTCCAAGCCACTGTAGTAGAGCTGAAAACACCAGATCTCAACCGTTCTGCCCCCAAACTTGATGGTGAAGTGAATGTACCAGAGATTAGAATGAATGTACCCAAAACTGATCTCAAAGGACCTGGACTAGTTCTAAAAGCTCCAGATGTAGACATTGATGCCCCTTCAGGCAAATTCAAATTGCCCCATTTTAAGCTCCCCACATTTGGCCTTTCAGGTTCTGAACTGGAGGGACAAAACCTTGATGTTGAGACACCTGACATTAAAGTTTCAGTTCCCAGAGTTGAGAGTCGACTTGAAGCCCCAAAGGTAGATATAGCTCTACCTCAAGCATACCTCAAGCTATCAGATCCTAATGTTAAAAGTGATATCAGTGCTCCAGATGTAAATCTAAGTTTACCAAAAACGTACCTCTCTGGCCCTGAGGTAGAGTTGAATGGTCCTGATCTAAGTCTCTCTACCCCAGAAATGAAAGTAAGTGTCCCAGACATTAAAGGCCCTGATGCCAAGTTTAAAGCTAAAGATGTTGACATTGAGGCTCCCTCTGAAAATCTGCCACATTTTAAGATGCCAAAGTTTGGTCTCTCGGGGCCTAGAATAAAGGGCACAGAATTTAATGCTAGTGCAGATGTAAATACACCTGATGTGGAAGTTTCAGTCCCCAAAAATGAGGGAGAGATTAGTACCCCTGAACTGAGTCTCTCTGCACCTGGCATTGAGGCCAGTGCTGACATGCCATATTTGGATGTAAATGTACCAGAAGCTGACCTCAAAGTAGATGTTGAGGAAGAGGGAGACACTCACAAAAGTACATTCAAATGGCCATTCAAGtggccaagctttaacttatCTGGCTCAAAAGGTAAAGATTCTGACATGGACGATGAGGAAGAATCAAAGCGTGATCAGGTGGAGGTGCCAATGTTTACATTTCACAGACTGCCACAGAACAACAAGATTGAGAGTGCATTCCAAGATGCTGCCAAGGCCCTTGGTGAGGCGATGGACACGCCAAAGCTTGAAGGAGGCCTTGAAACAGCTGGCGTAGAGGTCAGTTTGCCTAAAGTGAATGAAGGACAGAAGGTGACATCACCTTCAGGACTTATTAACATCATGGAGCGGTTGAATAGATTTAAAGCAAAAACACCCACAGCTAATGTCTCCCTACCAGAAGTGAAAGGTGAGCTCCATACCCCTAGCCTTGATGTCAGCTCTACCTCAGACGTAGATAGTTCCACTAAGCTTAAAAGAGGGACTTTCAAAGTTACAAAACCTGAATCTGGGATAGGCCTGGAATACCCTGTAGTGGACTCAGAGGGAAACGATAGCATGTCAATAAGCCTCTCCAATATGCTTGGTCTGAATATCAAAGAGCCCGATACAGATTATTGATAGTTTCCAGTCATGTGAACCGTACACTTGGGATAAACCAACATGATTGTAACTACTTTGTAAATACATACATTTGTTCATGAGTTGACTCCATTTTAAGGATGTGTTTTTTCTCTATGtacaaacaaaacagaaacaTGTAATTATTTGTTTGTCGATTCTCTGATAACTTAGTTAATCCATATGCTACTACATCTATATTCAAACAGTTGACAGCAAAATGAAGGAAAATATGCTCATTGGCTCTGTGTACTCAAACGTATTTAAATTATGGTAATGTTTCCCAAATGCTGTTCACTTGGAAGtttacttattattattttttacaaatgccTCAGTATTGTATCTTTCACAATTCAGACATGTTTCACCCATAAAGGAGACAATCTTTATGGAAGCTGTCATCTTCACATTTTAAGCTAAAACAATTGTTGAACAGTGAAATGTAATTCTACTATTAATTTGTTATTTCCTTCTCCAATAAACTACAATATGTCTATATGACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85446 lncRNA downstream 13443 69372575 ~ 69372793 (-) True G77284
TU85441 lncRNA downstream 16679 69369272 ~ 69369557 (-) True G77279
TU85439 lncRNA downstream 20106 69365611 ~ 69366130 (-) True G77277
TU85438 lncRNA downstream 21687 69364231 ~ 69364549 (-) True G77276
TU85396 lncRNA downstream 82212 69303752 ~ 69304024 (-) True G77235
TU85533 lncRNA upstream 109690 69510263 ~ 69539584 (-) True G77365
TU85580 lncRNA upstream 165608 69566181 ~ 69568595 (-) False LOC110528285
TU85581 lncRNA upstream 165608 69566181 ~ 69569073 (-) False LOC110528285
TU85583 lncRNA upstream 165608 69566181 ~ 69568595 (-) False LOC110528285
TU85585 lncRNA upstream 165608 69566181 ~ 69569073 (-) False LOC110528285
XM_021609993.2 mRNA downstream 23139 69288453 ~ 69363097 (-) True LOC110528163
XM_021609940.2 mRNA downstream 206673 69169520 ~ 69179563 (-) False vax1
XM_021609946.2 mRNA downstream 206673 69169520 ~ 69179563 (-) True vax1
XM_021609923.2 mRNA downstream 245142 69096881 ~ 69141094 (-) True atp6v1ba
XM_021609902.2 mRNA downstream 291002 69046945 ~ 69095234 (-) False shtn1
XR_005052655.1 mRNA upstream 20494 69421067 ~ 69432188 (-) True LOC118965314
XM_021610053.2 mRNA upstream 36749 69437322 ~ 69445652 (-) False exo1
XM_036983973.1 mRNA upstream 36749 69437322 ~ 69445678 (-) False exo1
XM_021610045.2 mRNA upstream 36749 69437322 ~ 69445733 (-) True exo1
XR_002474228.2 mRNA upstream 165609 69566182 ~ 69569154 (-) False LOC110528285
TU84152 other downstream 696007 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 808492 68575593 ~ 68577744 (-) False LOC110527951
TU83653 other downstream 1174530 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 1224234 68157961 ~ 68162002 (-) True sdhaf4
TU83339 other downstream 1704506 67669589 ~ 67681730 (-) True LOC110527687
TU86507 other upstream 682267 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 682267 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 682267 70082840 ~ 70085009 (-) False LOC118965321
TU86510 other upstream 685365 70085938 ~ 70087657 (-) False LOC118965321
TU86511 other upstream 685365 70085938 ~ 70088714 (-) True LOC118965321

Expression Profile