RNA id: TU85585


Basic Information

Item Value
RNA id TU85585
length 2093
lncRNA type read_through
GC content 0.50
exon number 2
gene id LOC110528285
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69566181 ~ 69569154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGCTGCAGACCCACACAGCAACAGCTACGCAGCAGCACTCCGGCTTTCCAGCTCTCCGGTTGTTCACAAACAGCTCTGGGATTTTACTGGCTCTTTGGAATAACACTTGCTGTGGCGTGGGCTGTCTGTAGTATCAGTCGATTGTTCTACAGCGGACTGGAGGTGCGGTAGTAGTTGCCGCAAGCACTAGCTGCTCCAGAGTAACCATGCGCGGCTGTAGCTCCGGGTTTCAGCGGCAGGCGAGAGAGAGGCGCCTCTGAAAGGCACTAATTGCTCTGCTCCAGAAAGAGGGAAGCAAGGAAGGACGGAAGGAGAGAAGGGGTGGGGGCGTGTACATTTGTCACAGAGACTGGGGCTCTCTCTTTGAGCTGCTAAGAGGGTCAAAGAGCCAACAAGAgccgaggaggaagaggggggctGTGGTGGAATTGGAGAGTGGGGCAGTAGGAtggggagagtagtggggagggggagCGTAAGAAGCTTTGGTTGTGGAGACCCGAGGAATAAAATAACAAAAGCAAAAAGGAGACAATACCGCAACCAAAACCAAGGCAGTATTTAACCAAGGGGGTGGCGCAGAGGACTGGAGAATTCATCCGGGCAAGAAGGGGGTGGTTTTCACAGAGAGCAGTGTCTGCGTACAGTGCCGCACACCAAGACGCAGTTTGGAGCCCGGATCTCCTTTTCTTTTCCTTACCACATATTCCTCTTTCTGTGACGCTGGGAGCGTGGGTACCCAGCCAGCTTCCCCCTGTCCCCCCCCAAATGCAGGCTCCTGTGTGTGGCCATGCTTCTCCGCTGAGGACCCAAAAGCATGCTGGATGTCACCCAGCTCCTCACACGCCTTAGGaTAAGTGCCAGCAGCACCCTTGCCAGGTTGGGCGAGCGTCATGGCCATGGGCCCAACGGTCATCACTATTGAGGAGGTGCGGGCGCTAGAgagcaaggaggagcaggaggagtccATCTTGGCGCTGCTGGGAATCGTTGGCACCTTCCTTAACCTCTTCGTCATTGTCTTTGTTTACATCTACACCGTTGTGTGAGCCAAGCCAGAGTGGGAGTGATCCCCCAAACGTCAAGGCACAAACCAAGCTTCCATCTAACCCCAACAAACGTATACTGGATTTTACATGCCAAGCTCCTACTCCCTCTAACTAGGTATTAGTTATAAAAAAGGTGCAAAACGACAAGATATTAAAATAGGAGGGGGGAGCAGTTTCCTCACACAGAGATTGAGGGTGGACAGTTCCGTGGGAGATGGCGTCTCACAGCCATGAACCAGAGAGATAATAGTGAGCTGGTGGACACATCAGGACCATGGCTGTGCTGGATCCAGGAGGGGGCGATAGACAGGGTTGGGCTGCAGGCCAGCACAGCCTGGGTGAACTAACTTCACCTTGGACTCAATAGAATGAGGGAAACGGACAGTGTTACCGACCAATCTCCATTGTcaagtggatttaaaaaaaaacagacaaaggGATATTGACGTCACTGGTCCGGATGGTTTCAGGGGCATGGCGTGGTGCTGTAATGTACTGTGCTGCTTGCCGTCAGATAGGCTACACACACCAAAGTGTTAGTCACCGCTTCTCATGATATGAGACATCACAACAGAGAGAtacaccatctctctgtctatttcgTCTCCACAAGAACTGATCTGCAAAGAGAGCAGAAGGAGTGGAAATGACAATTACACATTTAAATTCAAATCGACCACCTGGAGATCTGCAATAAAAAGgcaagtgggagagagagatattttttACAAAAAGGAGAGTCTGCTGTGGTGATTAAATCATCCGCAGGGGTGGAAAGTAACTTGTGGGCACTGGCAAAAAGCTCCATTCCGCAATTACTAATACATAAGGTCAGACTtaatcttctctctctttctgcatctcTTTCCACGTTCTGTTCGGTTATTTTGATGTAAGGCTATTTGTTCATGTTGATTTCAGGGTAGTGTCAGCGATTCAGTTTCTGTATAAAAATCAAAGCTTTTATAAACACATGAATAAACTAAACTCTAGATGTACTGTGCAATAGGGAACATTTTTACAATAAAATGAGAATATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85533 lncRNA downstream 26597 69510263 ~ 69539584 (-) True G77365
TU85446 lncRNA downstream 193388 69372575 ~ 69372793 (-) True G77284
TU85441 lncRNA downstream 196624 69369272 ~ 69369557 (-) True G77279
TU85439 lncRNA downstream 200051 69365611 ~ 69366130 (-) True G77277
TU85438 lncRNA downstream 201632 69364231 ~ 69364549 (-) True G77276
TU85595 lncRNA upstream 8188 69577261 ~ 69624783 (-) True G77415
TU85657 lncRNA upstream 65684 69634757 ~ 69635139 (-) True G77461
TU85663 lncRNA upstream 74146 69643219 ~ 69643434 (-) True G77467
TU85664 lncRNA upstream 74647 69643720 ~ 69643920 (-) True G77468
TU85753 lncRNA upstream 197324 69766397 ~ 69767956 (-) True G77554
XM_021610045.2 mRNA downstream 120448 69437322 ~ 69445733 (-) True exo1
XM_036983973.1 mRNA downstream 120503 69437322 ~ 69445678 (-) False exo1
XM_021610053.2 mRNA downstream 120529 69437322 ~ 69445652 (-) False exo1
XR_005052655.1 mRNA downstream 133993 69421067 ~ 69432188 (-) True LOC118965314
XM_021610006.2 mRNA downstream 165608 69386236 ~ 69400573 (-) True si:ch211-125o16.4
XM_021610399.2 mRNA upstream 431244 70000317 ~ 70022403 (-) False LOC110528376
XM_036984159.1 mRNA upstream 460972 70030045 ~ 70035653 (-) False LOC110528384
XM_036984148.1 mRNA upstream 460972 70030045 ~ 70035784 (-) False LOC110528384
XM_036984141.1 mRNA upstream 460972 70030045 ~ 70036201 (-) False LOC110528384
XM_036984154.1 mRNA upstream 460972 70030045 ~ 70036532 (-) False LOC110528384
TU84152 other downstream 875952 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 988437 68575593 ~ 68577744 (-) False LOC110527951
TU83653 other downstream 1354475 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 1404179 68157961 ~ 68162002 (-) True sdhaf4
TU83339 other downstream 1884451 67669589 ~ 67681730 (-) True LOC110527687
TU86507 other upstream 513767 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 513767 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 513767 70082840 ~ 70085009 (-) False LOC118965321
TU86510 other upstream 516865 70085938 ~ 70087657 (-) False LOC118965321
TU86511 other upstream 516865 70085938 ~ 70088714 (-) True LOC118965321

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU269882 True 1716 lncRNA 0.49 2 NC_053130.1 36239653 ~ 36242138 (-)