RNA id: TU86002


Basic Information

Item Value
RNA id TU86002
length 2944
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC110528376
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69993128 ~ 70022403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCGTTCTGCCGCACCCACAATGATATCTATTTTCATGGAATTCAAACTCACATCTACTACAGTCACAAACGCTCTAGACAACATGAAAACATCCTAACCACCtatgctagggcgagtaaaatggtcagagtgaggtgttctttcATTTGTATCTGGAAGTAACTAGCCAATTTTGGTCAGTTAGCTTGCTTGACTACCgttgttgtgaggtcagaacgctcggatcaaccctactcatcgACCATAGCTTCCAACGTGTGCTCTGAGCGCACTATGTGAGAGAATCTGCGAATCGGCATCCAAAACGTTTGTTTGTGACGCAGATCGGGGTTTGCGATCTCTATTTCAATCAGATCCtgcgttgacaccaggcagggtaGCTTGAGTCCGTTAGGTAACCGAGAAGTTGGTGTCAAGTTAATACTTTTAGCTAATAATATAAATGGTTTGAGATTCACTACTTGTTACTTACACCAAAGAAAGATGGGGAACCGTGTCCCTCGTGAGGATTACGAATGGGTTTATACAGATCAGCCACACGCAGACAGGAGGAAAGACATTTTGGGTGAAGAAAATCGCATCAGAGTACTACGATGACCTGCCCCAGTACACATCATGGGTGAAGGTCCTGTATGACTTCATTATGGACGACCGGCTCAGCCCCTACTCTCGTGTGAAGAGGAGGCTAAAGGGAGATGTCAAGCTGGAGTAaatccttcccctccctctctcttactcttaacaaaaaaactgaagtAAATTGACACCAGCCCCAATTAACCACCAAGACTTAACAGCTTTTGCATATTAATAGACATTTGAACAGAATGTGTAGTGtctgtggacagtatgtgtgacATGTATGTGTTAATGTTTTCCTCCTCAGGAACAACTGAAAGGGGTGAGGGAACATGGTTATCTAGTCTTCTCTAGCAGAATTACAACCATTACTGCTTGCATTCCAATTAGTCCTTATTACACAAGCTTGTCATTTCTCCTATTTGTTTTTCCTGAAAAGCCCATTTATTGCAGTTGTGGTCATTTTAGAAACCTGTAATAGGGATGACGGCAAGTCTGAATATTTTTCTATTCACAAATTTTGATTTTTAATTTATATGAAGAATTTAACTCTAGATTACTTAGGAGTTCAGCATCAGTTGCTGAATGTGTTGAATATTTGAGATCCTGTTTGTATAGTTTATTTTCTGATCAGTTTTATTTAGGCCACCTAAACAGTTTTTTTTCTGCTTTGGGGGGGTGAGAAGCCTAGCTTATCACTTCTCTTACGTGTCTACTGAGGCGAGTTGCAAATTCCATGCTAGAAATGTTATGTTCTCATTTCACTCGTAAAATATTGAGTTCTGTCCTTTCTTGTAGACTACTACACTTACCATATCACAGTGTGAGTAGAATGAACATATTGGCTAAAGTTGAGCTTATTTTAGCTCTTTTTAGATCGGAGGGCCATTTTGTATTGTACTTGCCAACAACCCCTGTTCAATAGCTGATTGTCTGAATCAGTTATTGCTCCAATTTTACATTTAATTTGGCACAATGGGGAGAAAGAATGGCATTAGATCAAACATTCATTTTTGTTTAATTTATGTTTGCCCTTTTATGGAAAGACAATGTGGCCTTGTGTAAATGACTGTAATGCAGATGCTGCGTTCATATCTTGTCAGATGGTGGAAATACAAAAGGACTAGCCTATAGCTTATGTATGCTCTAAACACCAAGGGTTCTCCTTTTATAGAAACTCTAAATGCACATAAAATCTGAATGTTATAGCAAATTTAGTTTTTAGACAATGAGTCTTTCAACAATCACTATTCTGACAGTCTCTTATGGAAACCCAATCAAAGGCCAAATTAATTGAAACCAAATCTAGGTAAGAGTAACTCTTAAGTCTGTCTTTTGTTCCATGTACTGTATGATTGTTGTTACAATTCCACTAGATTCTGAAAGTCTTGATTATTTCCAATTGTGTCCTTAACATTTGCAATGACGTAAGTAGCCTAATTTGTGAGAAAGACAAAATGGCAAATTTTAAGATGATTGACCTCAAGAACCAGGCCACACCCTtagtcactgagtttgaaagcCTCTCAAATATGTCACTTTAAAGTAGCTACCACTGAGGGAGAGAAAGCCATGATGTGGATAGATATTGTCCAAAGTGGATTGGAAACTTGCTGACATTGGTGCTGAATCACAAATTTACCCTTATACTCTCCATGTAGACCTGGAATGGTAATAGTTCCATCTTGCCATCTGATAGGCGTGGAGGGAGATTGGCCATATCGAATAGACCTACACTTATCCAATCTATTACAGATTTACCTAGGGTTGATTTGCGATTCAGGGGGCCTCTGAAACAAGGTAGAGGGGTTGTTGGTTACATCTACATCAGTATTAAACAAACTGAACTCATGCTAAGGGTGAAAGAATGTTTATATTCTCAACTCAAACATTTTAATTTGGAATATTCTGCAGCAATAGTCATGATTACATAACTGCATCCAATATGATTTTATTAAACTAACTGACCTGGTTTTGTCTCATCCTTTTTGATGGTTAACTATAAGGTCCTGTCATAAAATGGAATAGCAGGTCAGATCTATTGGGTATAGGCTAGAGCTGTACTGGTAATTGCATTAAGGCtggggttgggtaggttacttttaTGTAATCCGTTAGTTACCTGTCACGTGTAATCATTAATGTAACAGATTACCCAAACTAACAATCTGATTACATTGTTACTTTGACTACTTTAAGgcattagaagaaaaaaaaagtcctcaccagggtcttggcctgactgcagttcggtgtcaACTGAGacacggatgaatcccagtttcaactgtaccgggcagatggcggaccgcatgtatggcattgtgtggacAAGTGGTTTGCTGTTGTGAACAGACTGCCCC

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86068 lncRNA downstream 10349 69989076 ~ 69989577 (-) True G77856
TU86067 lncRNA downstream 11429 69988260 ~ 69988497 (-) True G77855
TU86008 lncRNA downstream 24348 69975088 ~ 69975578 (-) True G77799
TU86052 lncRNA downstream 29075 69963980 ~ 69970851 (-) True G77840
TU86004 lncRNA downstream 40881 69957132 ~ 69959045 (-) True G77795
TU86082 lncRNA upstream 2982 70025356 ~ 70025765 (-) True G77870
TU86474 lncRNA upstream 7687 70030061 ~ 70032027 (-) True LOC110528384
TU86485 lncRNA upstream 28644 70051018 ~ 70051230 (-) True G78217
TU86486 lncRNA upstream 30210 70052584 ~ 70053194 (-) True G78218
TU86487 lncRNA upstream 31580 70053954 ~ 70054277 (-) True G78219
XR_002474228.2 mRNA downstream 430772 69566182 ~ 69569154 (-) False LOC110528285
XM_021610045.2 mRNA downstream 554193 69437322 ~ 69445733 (-) True exo1
XM_036983973.1 mRNA downstream 554248 69437322 ~ 69445678 (-) False exo1
XM_021610053.2 mRNA downstream 554274 69437322 ~ 69445652 (-) False exo1
XR_005052655.1 mRNA downstream 567738 69421067 ~ 69432188 (-) True LOC118965314
XM_036984159.1 mRNA upstream 7671 70030045 ~ 70035653 (-) False LOC110528384
XM_036984148.1 mRNA upstream 7671 70030045 ~ 70035784 (-) False LOC110528384
XM_036984141.1 mRNA upstream 7671 70030045 ~ 70036201 (-) False LOC110528384
XM_036984154.1 mRNA upstream 7671 70030045 ~ 70036532 (-) False LOC110528384
XM_036984184.1 mRNA upstream 34178 70056552 ~ 70066441 (-) False LOC118965320
TU84152 other downstream 1309697 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 1422182 68575593 ~ 68577744 (-) False LOC110527951
TU83653 other downstream 1788220 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 1837924 68157961 ~ 68162002 (-) True sdhaf4
TU83339 other downstream 2318196 67669589 ~ 67681730 (-) True LOC110527687
TU86507 other upstream 60466 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 60466 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 60466 70082840 ~ 70085009 (-) False LOC118965321
TU86510 other upstream 63564 70085938 ~ 70087657 (-) False LOC118965321
TU86511 other upstream 63564 70085938 ~ 70088714 (-) True LOC118965321

Expression Profile