RNA id: TU86508


Basic Information

Item Value
RNA id TU86508
length 2266
RNA type TUCP
GC content 0.48
exon number 3
gene id LOC118965321
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70082835 ~ 70088715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccaaccCTTTTCAACcatctttctctcatctctaatCTCCTCCCTCACTCAATTTCTCACCCCCCACTCtctatctctgactctctccccctccactccctccgcTCGTCCTCTCTCAGAGGAGGCAGCTGCAGTGCTGGGTAAAGATGAGGTTTTGTTGGCGAGGATCATGGAGTGGTGTGAGGCACGGGACCATGCAGGGGTCAGGGGAGAGGCCAACCGCCTCCTGGCCGCCCTTATTAGACACAGCCGTGCCCCGGAAGTCATCAATGCTGTAACCAAAGCAGATGGGGTGCGACACCTCATCTCCATGGCAACCAGTGAACACTTGATCATGCAGAATGAAGCCCTGGTGGCCCTGGCGATTGCATCTGCCATTGACATCGGTGAGGGATTCTACTATCCTTTGAGAGCAAAGAGGGAAAGATCAATACATCTAAAGCTATCCTTTGGACTGACAGAACGTAGCTAGATACATGTTTACTGACAGAAACCAAAATAAATAGATTTGTAATAatatctgtatatactgtattatgtcAGCATGTAATAACATATAATGTAATAATATCAGCTTATATTTCACAATGGTAATTACTGTAAGCTCTTTTTTAGGTTATACTAATTCCCCTGCATACCAATGTTCAATACCATAATGTACTTCCTGTAAATGAGAGACTAACACTCCTTGCGTGTGTGCTTGTGACATGTCCTTCTGTTTTCCAGCCTCCATGCAGGAATCGTTCCGAGAGGGCTCCGAGAGAGCTCTTGCCCACACTGCAGAAGATGCTGGATGACCCAGTGGCGACTGTGGAGTTCAAGTTCAGTGCCCTAGGGCTTATCTGTAGCCTGGCCAACTCCAGCTCGATGAAGGAAGAAATGGAATCTCTTAACCTGAAGGAGACGCTCAACAAGCTCTCTGGTCACTCCAGCACCAACGTAGCCACACAGGCCGACACagtgctggccatgctttctgaAACCAGCTAGACTGGCCTGACCGGACCACTGCCCTGGTCAATGTGACCACAGACTCTCAGCACCACGTGCCACCACAACCTCCCCTACTATCGTGACTACACCATTCTCTCCATGAAAAGAAGCAGATATTGAGTCTTCCAAAGCTAGGCCTCCATTCACCTGGTCTATGGAGAGCACAGCTGGACAGAGCTACATTAAGACTGACCAACCCAATATGACAGAGCGCTAACAAGGTGATAGCCTATGTTCTAAGCACAAGCTGAATGAGCCAACCCATGAAAACGCACACGAATCACAACAACCCCAGTTCAGTCCTCATGACCATCTGTAAAAAtagtgtttctgtgtgaaataGCTCTTCTAATCAGTACTCCAATCAATTCAATGTATGTATGATTTCCGATAGCAACCAGTGTATATTATCAAAGGAAACGTTTGCGTATAGGGTTAATCATGGCTACTGTTTCATAGCACCTAATGCGCTTACCCTCAATGGAAAACACAAAACTAACGCCTGACACTGTTTATCCATGTGATGTTCTATCTATACTCTGTATTGACCAATGTCCATGGATGTAAATGTTCCTAGAATAGGACCTGTCTCTTCTCTGTGGATCTTGCATAGTGAGATCCCCTCTGTACTATCTACAGTTTACAGctcaagaaaagcattcaaagcCAATATCTCTGATATTTTACCAAAGTACATTTTAATTAGTGCTAGTTATCTGAGAGCACAGGTGGGTGGGCACTGGGGATAATCATTACAGAGCTGTGAGAGTGTCAGGCACCTCCCCCACTGGTTGCCAGCTCCAAAATTCAGACTGAAAGGGATCAATATGTTATGTTGATGCTGGGCCAGCAAAGGGCTTGTGATGAAGGGAGCTTTAATGTTGCACTCAGAGCCCTGCTGATTCAACTCCTTTTAACACCAATTTGTTAAGGGGTCTTGAGCCCAACAGAGACTGACTGGCTATTTCAAAGGGATTAATAGAGCTAATAGCAACTGAAAAACAgctctccatctgtctttcctTTTAGTACCTAATAGGCTACTCAATGGGAGCTGAgttggtaaattagcttttaaTGTTGAATGAAATTATGAACGAGATTGGTGGGTTTTCTCACTATCTAATCGTGGCATgtggttgttcaatgacagacatgtatttgtttaaaatctataactttttcatttcagagagacacaTAATCATGTTTTTTTGCAAAATGCTAACAAATATGtaacaaataactacatttttaataaagaaatgtACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86505 lncRNA downstream 2384 70080058 ~ 70080456 (-) True G78237
TU86501 lncRNA downstream 9564 70073074 ~ 70073276 (-) True G78233
TU86499 lncRNA downstream 11640 70070736 ~ 70071200 (-) True G78231
TU86476 lncRNA downstream 26353 70054698 ~ 70056487 (-) False G78209
TU86574 lncRNA upstream 101296 70186681 ~ 70188815 (-) True G78301
TU86586 lncRNA upstream 122183 70207568 ~ 70209802 (-) True G78313
TU86591 lncRNA upstream 148161 70233546 ~ 70233762 (-) True G78318
TU86594 lncRNA upstream 152960 70238345 ~ 70238672 (-) True G78321
TU86595 lncRNA upstream 155514 70240899 ~ 70241162 (-) True G78322
XM_036984177.1 mRNA downstream 6942 70056552 ~ 70075898 (-) True LOC118965320
XM_036984184.1 mRNA downstream 16399 70056552 ~ 70066441 (-) False LOC118965320
XM_036984154.1 mRNA downstream 46308 70030045 ~ 70036532 (-) False LOC110528384
XM_036984141.1 mRNA downstream 46639 70030045 ~ 70036201 (-) False LOC110528384
XM_036984148.1 mRNA downstream 47056 70030045 ~ 70035784 (-) False LOC110528384
XM_036984204.1 mRNA upstream 10304 70095689 ~ 70111416 (-) False LOC110528401
XM_036984207.1 mRNA upstream 10304 70095689 ~ 70111417 (-) True LOC110528401
XM_036984455.1 mRNA upstream 319955 70405340 ~ 70512265 (-) False camk2g2
XM_036984466.1 mRNA upstream 319955 70405340 ~ 70512265 (-) False camk2g2
XM_036984432.1 mRNA upstream 319955 70405340 ~ 70512266 (-) False camk2g2
TU84152 other downstream 1392611 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 1505096 68575593 ~ 68577744 (-) False LOC110527951
TU83653 other downstream 1871134 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 1920838 68157961 ~ 68162002 (-) True sdhaf4
TU83339 other downstream 2401110 67669589 ~ 67681730 (-) True LOC110527687
TU86510 other upstream 553 70085938 ~ 70087657 (-) False LOC118965321
TU86511 other upstream 553 70085938 ~ 70088714 (-) True LOC118965321
TU86690 other upstream 269531 70354916 ~ 70355591 (-) True G78414
TU88004 other upstream 1236565 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 1243639 71329024 ~ 71386523 (-) False G79616

Expression Profile