RNA id: TU86511



Basic Information


Item Value
RNA id TU86511
length 780
RNA type TUCP
GC content 0.50
exon number 6
gene id LOC118965321
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70082835 ~ 70088715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAGTTTTCGCAGGATCAGGCGTGAGCCCCACAGTCAGAGAGGGGTGTTGTGGCTAATGCAGAGGTCGCTAAACCAACAAGAGAACGAAGAAACCAGAGAGGAGCATTGGAGCACCATAGATGATCCTGTAATATGAAGACACGACGCGGGAGGCTCTGGTAGAGGTGGGCGTGGCAGAGGTGCTGACGGCCCAGCTAAAACTGGCTACTGACGCAGAGAGAAGACACATCATACTGGAGGTTCTGGGATCACTGGGAGAGAGTGACGTTCTGAAGCTGCAGTTTGTGGAGTCGGGGGTTCCTGAGGCTCTGTCCGAGATGATTCGGGGGCTACAGGGTGGCTCTGACCCCCATGACCTCTGCAGCATCAAGATTGCCTCTAACCTCATCGTTTCCCTCCTGCTGGGAGATGAGTCCATGCAGAAGTGTTTTGGCGAGGGCACGGGTGTGGTGTACCGGGATGTACTCTCTTGGCTGCAGTCCTCCAACACTCAGCTGCAACTGTCTGGAGCCCTGGCCATCGCCAACTTTGCCAGGAACGACAGTAActgtgtgaagatgttggagTTAGGGGTGGTTCCTCATATCCTGACCCTACTGGAGCAGCATGTGGACGAAGGCGACGTGTCCGTCCAACATGCCGGACTGAGTGCGCTCAGAAACCTGGCGATCCCAGCCAGTAATAAGGTGAGGATGCTGGAGGACGGGGTGACAGAGAGAATCAGGACCTTGCTGCGCTCTGACATGCCCCCAGTGCAGTTCAAACTGCTGGGCACCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86505 lncRNA downstream 5482 70080058 ~ 70080456 (-) True G78237
TU86501 lncRNA downstream 12662 70073074 ~ 70073276 (-) True G78233
TU86499 lncRNA downstream 14738 70070736 ~ 70071200 (-) True G78231
TU86476 lncRNA downstream 29451 70054698 ~ 70056487 (-) False G78209
TU86574 lncRNA upstream 97967 70186681 ~ 70188815 (-) True G78301
TU86586 lncRNA upstream 118854 70207568 ~ 70209802 (-) True G78313
TU86591 lncRNA upstream 144832 70233546 ~ 70233762 (-) True G78318
TU86594 lncRNA upstream 149631 70238345 ~ 70238672 (-) True G78321
TU86595 lncRNA upstream 152185 70240899 ~ 70241162 (-) True G78322
XM_036984177.1 mRNA downstream 10040 70056552 ~ 70075898 (-) True LOC118965320
XM_036984184.1 mRNA downstream 19497 70056552 ~ 70066441 (-) False LOC118965320
XM_036984154.1 mRNA downstream 49406 70030045 ~ 70036532 (-) False LOC110528384
XM_036984141.1 mRNA downstream 49737 70030045 ~ 70036201 (-) False LOC110528384
XM_036984148.1 mRNA downstream 50154 70030045 ~ 70035784 (-) False LOC110528384
XM_036984204.1 mRNA upstream 6975 70095689 ~ 70111416 (-) False LOC110528401
XM_036984207.1 mRNA upstream 6975 70095689 ~ 70111417 (-) True LOC110528401
XM_036984455.1 mRNA upstream 316626 70405340 ~ 70512265 (-) False camk2g2
XM_036984466.1 mRNA upstream 316626 70405340 ~ 70512265 (-) False camk2g2
XM_036984432.1 mRNA upstream 316626 70405340 ~ 70512266 (-) False camk2g2
TU86507 other downstream 553 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other downstream 553 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other downstream 929 70082840 ~ 70085009 (-) False LOC118965321
TU84152 other downstream 1395709 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 1508194 68575593 ~ 68577744 (-) False LOC110527951
TU86690 other upstream 266202 70354916 ~ 70355591 (-) True G78414
TU88004 other upstream 1233236 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 1240310 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 1287571 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 1287571 71376285 ~ 71386523 (-) False G79616

Expression Profile