RNA id: XM_021610545.2


Basic Information

Item Value
RNA id XM_021610545.2
length 8955
RNA type mRNA
GC content 0.54
exon number 23
gene id zswim8
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70194295 ~ 70228504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtagtgtagtttgttttatttattttaggtcGTTTGTATGGATATATCCCCCCACATCTGTTCCGTTTTTGGGGGGATCCTGTTTCTATCCCGCACAGTAGATGGCGGCATGGAGAGTAAATGTTTCGAACACCAATATACCAttgtagtagaagaagaagaaaaagaagagccATCTTCCCGAccggagagagtggaagagatggGGGATTGTTGAGACAATTTTGAGGGACTCCGGTGTTGTTAGAAGCCTCAAAGACACAACCTGGGGACGGTAGGACTACCGGTGTCGGTCGGGGAAAATGAAAGGGACTTTTCTACAGTTTCCGGACTAGGTGTCATTGGGAACCAGTGCAGTGGCGGGCTCGAGCGAGGAAGCTTTTTTCAAAATACAAAGCAAAGGGAAAAGATATTCGAGTCAAGGTATTAGCTATTAGCGTAGGTTTGCAATCGAACAAATATAAAACTGACCGTGCATCATTACCGGAGACAGTTGATCTAAAACAGTAAGTAGTCGGTCAAGTTTGACGGTTGTGTAGTTTTTCAAAGGTgtcaatgtaaacaaacaccaaaGCCCTTGTTGAAGCGGGTGGTGTGTAACTGTACTAGTAGTGGGGCTTTGAGACTCGGATTATGACCAACTGTAACCTGTCAGAGAGATAATGTGTTCGTAAAACGATTGTTTCCCTTAAATTATACATCTTACGACGTTTGCGAATGATGACAATTtagtcttttttattttttaagctAGCTAGTTATTTTAGCAAGCTACTGAGTCTGATTGACCAGGCAGTGTTAgcttagctagctggctagttaggTAGCATTAGCcagctaagctagctagctagcagatcTTCAAGCTTGAGTAGTGAATCTCTGTCAAAGAAAGAATGACATACGTTAGCGAGATTATACTTACCAACGttgttttattttaaattaaaAAGGCCTTGCAAGTGTTTGGAACATTTTGTACGGCTGTCTCGAGACGGGTAGTGTATGCAGCACAGCTGATTCGTCAAGAAGGGGAGGTAGGAAATGGTGGAAAACAAGTTCAGTTTGTGTATATTTCATTTTAAGTACAGTAGCTGACGTAAATATTCCTGTTTACGAGTTGGGTTAATCTTAGGTAATTGTATCATTAAAAGTAGTTAGATAGCTAGAACCCTATAAAAATGCCTGTGTGTGACTTGTGAGTGGGGGTCGTCTCCCTCGAAGCACTGCTCAATTTAGACAGTCAAGCAGAAACAGTCCAACTCGAAACAGGGGAGTGATAGGGTACAGAAACTAAATTGTTACCGAACTGGGATCAACTTTCTCAAACGACATGGATATAAGGTGTCTCAGAAGTTATTGCCATAAATGGCATGGCCCTTGGTAATAAAGTTAAGTCATTGTGTTCCCAAGATGTGCCTCTATTTTCCAAATACTGAGTACTAATTTGGTACAATTTGTGATGGAAGTATTTTTTCCCCTACAATTGATAATGGATATTTTTGTTTTACTGTGTAGTTCGCCTGCAAGACTACAGTGAGCTCTCAGCAGTGTTTTGGTTGTTTTGCTTACCCCTCCCCCAATTTTTACTGGAGACTTGTGGAAGTGTTCATTGCTTCTGCTCTCTTTCAGTGGTGGGCAGATCTCACCCGTTTTTTCCCCCCTGCCTTTGACGGAAGGCCTTGGCTATTGTACAGTCCACTTGAATCCAGAGTTATATATCCTACAGTGGATGTAATGGAACTAATGTTTGCCGAGTGGGAAGACGGAGAGAGGTTCTCCTTCGAAGATTCTGACCGGTTCGAGGAGGACTCGCTCTGCTCTTTCATATCAGAGGCTGAGAGTCTGTGCCAGAACTGGAGGGGATGGAGAAAACAGTCTGCTGGACCAAATTCTCCTACAGTGAAGATTAAAGaTGGTCAGGTCATCCCTCTGGTGGAGCTATCAGCCAAGCAGGTTGCATTCCACATCCCGTTTGAGGTGGTGGAGAAGGTCTACCCTCCTGTCCCCGAGCAGCTGCAGCTCCGCATCGCCTACTGGAGCTTCCCAGAGAACGAGGAGGACATCCGGCTGTACTCGTGTCTGGCTAACGGCAGCCCTGATGAGTTCCAGCGAGGGGAGCAGCTGTACAGGATGAGGGCTGTCAAAGACCCTCTGCAGATAGgTTTCCACCTCAGTGCCACCGTGGTGTCGCCCCAGGCTGGCCAATCAAAAGGGGCGTACAATGTGGCTGTCATGTTTGACCGCTGCCGCATCACTTCCTGCAGTTGCACCTGTGGAGCCGGGGCCAAATGGTGCGCCCATGTGGTGGCCCTCTGCCTCTTCAGGATCCACAACGCGTCTGCAGTCTGCTTGCGAGCCCCCGTGTCAGAGTCCCTGTCCCGGCTGCAGAGGGACCAGCTGCAGAAGTTTGCCCAGTACCTCATCAGTGAGCTTCCCCAACAGATTTTGCCCACAGCCCAGAGGCTTCTGGATGAGCTCCTGTCCTCCCAGTCTACAGCCATCAACACAGTGTGTGGTGCTCCCGACCCCACTGCTGGCCCCTCAGCCTCTGATCAGAGCACCTGGTATCTAGATGAGTCAACGCTCAGTGACAACATCAAGAAGACTCTGCACAAGTTCTGTGGCCCCTCTCCTGTTGTCTTCAGTGACGTCAACTCCATGTACCTGTCATCCACGGAGCCTCCGGCGGCGGCAGAGTGGGCATGTCTGCTGAGGCCGCTGAGGGGGCGGGAGCCTGAGGGCATCTGGAACCTCCTTTCCATTGTCAGGGAGATGCTCAAGAGGAGAGACAGCAACGCTGCACCCCTACTAGAGATCCTCACTGAGCAGTGTCTCACTTATGAACAGATCATTGGCTGGTGGTACAGCGTGCGTACTTCGGCATCCCACAGCAGTGCCAGCGGGCACACGGGGCGCAGTAACGGGCAGTCGGAGGTGGCAGCCCACGCCTGCGCCAGCATGTGTGACGAGATGGTCGTTCTGTGGAGGCTGGCTGTCCTAGACCCCACCATGAGCCCTCATAGGCGTTTGGAGCTGGCTGCCCAGCTCAAGCAGTGGCATCTGAAAGTGATTGAGATCGTGAAGCGAGGACAACACCGCAAGTCCCTGGACAAACTGTTCCAGGGCTTCAAGCCAGCCGTGGAGTCCTGCTACTTCAACTGGGAGGTGGCCTACCCACTGCCAGGCATCACCTACTGCAGTGCAGACAAGAAGAGCGCTTCCTTCTGCTGGGCCAGGGCAGTGCAGCAGCAGAGAGGGGCCAAGGCTGGCCTGGCTGGAGACCCCCCTGAACCTGGAGGAGGGAGATCTGGCAGCTctgagggaggtgggggagactACAAGGGCAGAAGTCTCCAACAAGAAGTGGCGGTCAGGCCCAAAGAGACCATCGTGAGCAAGAGGAAGGGGTTGTCGGCTGGGGGCGGAGGAGGGGTCCTAGTGCGGCTAGGGggcagtgtgtctctctctctagaggagGGCAGTAGTAAGGGGATGTACAAAGGCGCAGGTTCCTCCTCGTCCACTGGGGGCAAGGCTAAGATAGCCCAGGGGGGCAAGTCATCCTCTGGGGGATCAGGAGTGGTAGGGGGAAAACACCAAGCGGCCAAGCGGCGCACCAGCAGTGAGGACAGCTCCCTCGAGCCTGACATGGCCGAGCTGAGCCTGGATGATGGCTCCAGTCTGGCTCTGGGTGCTGAGGCCAGCAACACCTTTGACTTCACACCCCCGCCGCCTGAGATGCTGCCCTCACCAAGCCCGCTACTCAGAGAGCCACACAAATACAGTGCGGGAGGGAAAGGGGCCGGAAACACGCCCAAGGAGCGTGCCTTCGAGGGCAAACGGGCCACCCTTGCTGCCACCCTGCCTGCCGCTGAATCCCAGCCCGCCTTCCCCACCAAAGAGAACGCTGCTGTCATCGTGGAAGCAGCCATTGCCGTGGTGAATGTGGAGGCGGAGATGAATGGAAATGAGGAAGCGGCCATCGCTGGAGATGCTCGGCCCTCTACCTCGGTTGTTACCGTGACTGCAGCTGCCGCCAAGTCACCGCATGATGGCCGCCGAGAAACTGGCACTGGAGCCGTAGCACTGcccaatcaggccccagagggAGCAGCAGGGGCAGGAGGAGACCCTGTAGGAGAGGATGACTACCAGGCCTACTTTCTGAATTCAGCTAAtgaggagggggcagagagagtgtCGGAGAACAACAATGAGGAGGAACCAGACATCTTTGCTGGGATCAAGCCACTGGAGCAGGAGGGCCAGATGGAGGTGCTGTTTGCGTGTGCAGAGGCCCTCCACGCTCACGGCTACAGCAACGATGCCTGCAGACTGGCAGTGGAGCTGGCTGGAGACCTGCTGGCCAACCCTCCAGACCTGAAGGTGGAGCAGCCCCAGACCAAGGGCAAGAAGAGCAAGGTGTCCACCAGCAGGCAGACCCAGGTGGCCACTAACACGTTGGTTAAGACCTCCTTCCTGCTGACGGTGCTGAGCGAGAGGCTGGAGCTCCACAACCTGGCCTTCAGCACGGGTATGTTCTCTCTGGAGCTGCAGAGGCCCCCAGCCTCCACCAAGGCCCTGGAGGTCAAGCTTGCTTACCAGGAGTCAGAGGTGGTGGCTCTGCTGAAGAAAATCCCTCTGGGCCTGGTGGAGATGACGTCCATACGGGACAGGGCCGAGCAGCTCCGAGATGGGAACTTCTGTGACTACAGGCCCGTCCTGCCCCTCATGCTGGCCAGCTTCATATTTGATGTGCTGTGTACCCCAGTTGTGTCCCCCACAGGTTCCCGTCCGCCTAGCCGTAACCGGAACAACGAGATGCCTGGAGATGAAGAGCTGGGCTTTGAGGCGGCTGTAGCAGCACTGGGTATGAAGACCACAGTGAGCGAGGCAGAGCATCCTCTGCTGTGTGAGGGGaccaggagagagaaaggagacttGGCTCTGGCCCTCATGATCACATACAAGGATGACCAGAGCAAGCTGAAAAAGATCTTGGACAAGCTGCTGGACAGAGAGAGCCAGACCCACAAGCCCCAGACCCTGAGCTCTTTCTACTCCAGCAAGCCAGCTGCCAGCAGCCAAAGGAGCCCGTCCAAGCATGCTGCCCACACTGCTCACGGACACGGAGGTGCCACAGGAGGGGTGTCCAAACATGCCCCCAACGCCACAGCTGCAGCcgggtcctcctcctcctccttgcaaGCGGTGGCTACTGGGGGGGCGGCAGGACAGCAGGCAGGTCTGGCAGGCAGTGGGGTGCAGAACAACCCCACAGCCGGAGAGTGTGTCAGTGAGGCCAGAGAGCAAGATGGCGTCCAGCCTGCGTCATGTGACCAGCCGAGTGAGGCTGTCCCATTCAAGCCAGATGGCACAGTGCCGAGCCGCTTGGCGCTGGGAGGACGGGGGGCATACAGCGGGCGCTGCTGGGGCTCTCCTGTCCGCCAGAAGAAGAAACACACAGGCATGGCGAGTATCGACAGCAGTGCTCCTGAGACCACCTCAGACAGCTCCCCCACCCTTAGTCGACGCCCGCTCAGAGGGGGCTGGGCTGCAGCTTCCTGGGGGAGGGGCCAAGACAGTGACAGCATCAGCAGCTCCTCTTCTGATTCGTTAGGCTCCTCCTCATCCAGTGGCTCTCGCAGGGCCGGAGGCGGAGCTAGGGCAAAGAGCACAGACACCAGCAGATATAAAGGACGTCGTCCCGAGTGCCATGCACCACATGTGCCCAACCAACCGTCTGAGGCGGCGGCCCACTTCTATTTCGAGCTGGCCAAGACCGTGCTGATCAAGGCCGGGGGCAACAGCTCCACCTCCATCTTCACCCAGCCCTCAGCCAGTGGAGGCCACCAGGGGCCCCACCGCAACTTGCACCTCTGTGCCTTTGAGATCGGCCTGTACGCCCTAGGCCTGCACAACTTTGTCTCACCTAACTGGCTCTCCAGGACCTACTCCTCCCACGTCTCCTGGATCACAGgCCAGGCCATGGAGATCGGCAGTGCTGCCCTCAACATCCTGGTGGAATGCTGGGACGGGCACCTCACCCCTCCCGAGGTGGCATCACTGGCCGACAGAGCATCACGGGCGCGGGACCCCAACATGGTTCGCGCTGCGGCTGAGCTGGCCCTTAGCTGCCTGCCCCATGCACACGCCCTCAACCCCAATGAGATCCAGAGGGCCCTGGTGCAGTGCAAGGAACAGGACAACGTGATGCTAGAGAAAGCCTGTATGGCTGTAGAGGAGGCAGCCAAGGGGGGCGGTGTGTACCCTGAGGTTCTGTTTGAGGTGGCCCACCAGTGGTACTGGCTCTATGAGCAGACAGTAGGAGGGGGGTCAGGGGCCCAGCGTGAAGGCCCGGGACGCTGTGGGGCCAACGGCGGAGCTGGAAGGAGGCCCCCAGAGATGGGCCACGGTGTAATGGACAACATTGGCAACATGGATTCCTCCGGCGTCGCCACGGTGACGGCCTCAGTGACAGCAGCGGCTGTGGTGCCCGTCATCTCTGTGGGCTCCACCATCTACCAATCACACGCCCTTCCCGGCTCGGCCATGGCCCACCCCCACACCCAGGGCCTGCacccctacaccaccatccaGGCCCACCTACCCACAGTCTGCACCCCCCAGTACCTGGGGCACCCACTGCAGCACGTCCCCCGGCCCACTGTATTCCCCGTGTCAGGGGGTGCCTACCCACAGGGAATGCACCCGGCCTTTATCGGTGCCCAGTACCCGTTCTCAGTGGCCGCTGGCCCCCATCCGCCCATGGCAGCGACAGCGGTCACCTTCCCCGGTGTTCCCGTGCCGTCCATGACCCAGATCGCCGTCCACCCCTATCACACCGAGACCGGCCTGCCTCTTAGCACCACTGTAGCAGGAGCCGCATCTTTTTCCCCTTTCTATCCAGTAGGTGGCGTCCATTCAGGCGCCACAATCCAGGCCATTCAGGGGTCATCTCTTCCTGGAATGTCTTCTCAGCCTGTCTCATTGGTCAGTGCCCCCTTCCCGTCTGAAGACGAGCAGCAtagccagccaatcagccagcaGGGCCTTCACTACCTGCACTCAGCATACAGAGTTGGCATGCTAGCATTGGAGATGCTGGGCAGGAGGGCTCACAACGACCACCCCAATAACTTCTCCCGCAGCCCCCCATACACAGAGGACGTCAAGTGGCTCCTGGGCCTGGCTGCACGGCTAGGGGTGAACTACGTGTACCAGTTCTGTGTGGGTGCGGCTAAGGGTGTGCTCAGCCCCTTCGTCCTTCAGGAGATCATCATGGAGGCTCTCCAGAGACTGAACCCCGCCCACATCCATGCCCACCTCCGCACGCCTGCCTTCCACCAACTGGTGCAGCGCTGCCAGCAGGCCTACCTACAGTACATCCACCACCGGCTGATCCACCTGACCCCGGCCGACTACGACGACTTTGTCAACATCATCCGCAGCGCCCGTGGGGCTTTCTGCCTGACACCTGTGGGCATGATGCAGTTCAACGACGTGCTGCAGAACCTGAAGAGGGGCAAGCAGACCAAGGAGCTGTGGCAGCGCATCTCTCTGGAGATGGCCACCTTCTCCCCATGACTATGAGGGCAGTGGAGTGGGAGAGGAACGACGCTCCCACCCTACAAACCCACAGCCCTGTcgatctctgtctctttccatcGACCCGTAGCCCTGCATCGAACGCTCTCTCCATTCGCCTTTCTGGCCTCTCGCTCACCTGACGTCACCCATCTCCTTGTGTACCCTGATGTACACACCCTACACAGCACACAGGCAGCACAATCAACCCCCATTTCCTTTTAGATGTCATAGGTGTGTGAGACACAGAGTTTGAGGTAAGCTGAATGGAGATCAGTTTATGTAGTTTTCTATATCTGTGTGTGACTGAATTGCAGCTCCCATTTATCATGGTTCATGTCTCTTTGTAACTTCCTGTAACGTATATTCCCAACTCATGTTCATCCTCCCAACTTTCCTACCAGAAGCTGTCACGAAGGATGCTTTATGGTTGCTTGGGGTGTATAAGTTGTCATTTattttgttgttgatgttagttggTTCTTTTATTGAAACAACTGAGTAAATCAGATTCATACTGCAACATTCCTCTGTCCTGGGGGAGTGAGCCTCCACCAGTCACTACGGATCTGAATTTTAGGTATTCTGACAGTGTTTAAACAAGAAAGAAAAAAGCAAGACAAAAAACAGTTTGTTGAAATaattgaaaaaaaatgtaatacgaAAATTATCTGAGTACGGGTGAGGATTCTTTTTAGTGTTTTGTTTAATCTTTTGTTTTTGATATTTTGTATAGAATAACGTGTATGCAGAGAGGACTTTGAGAATGAGCGAGTGTTAACATGAGTTTTGTGTGGGTTACCTTTTCCAATTTAGCGGTTTGAGGTTTTGGGTCTGGAAACACAGGAGTCTGGCTGGACCAAACTCATCATTGGCCCTTTTGTAGTGGTTCAAGAGTGTAAGTGTACGGCCCCTGAGAATCTCAAGTACAATCATCCAATCAAATATCAGGATCACATAAAGGATGAGTGGACATGACATTTACATATGCCCTGCACATGTAGAATCATAAAAGTGCTATGCTCATAAAGGCTTATATGCAGACTGGGTTTCCAGGATACATCCATCAGCTGTTACTGTGGAATTCATGTCCATTGATGTTTTATAGGCGGCGTTGCCAGATCCCTGTGTTCCAAATCCACACCTCCAACCTTGCTCTGGAGCTCACGGGGTGAAGAGTGACTTAGTAGAAAATGTACTGTGATATTTTTGTATTCCTCGAAGTGTAGcttgattgaaaaaaaaaaaaaaaattaaacattttGCTGATTGCAAGAAGTTGTAATttagaataataataaaaaaatggatAAAGCAATACTGACATGTAGAGTTTACTTAATAAAGGTAATTCAAAACACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86185 lncRNA upstream 5474 70186844 ~ 70188823 (+) True LOC110528418
TU86085 lncRNA upstream 50603 70136881 ~ 70143694 (+) True chchd1
TU86127 lncRNA upstream 97198 70082837 ~ 70097099 (+) False G77903
TU86128 lncRNA upstream 97198 70082837 ~ 70097099 (+) True G77903
TU86126 lncRNA upstream 98681 70082180 ~ 70095616 (+) True G77902
TU86221 lncRNA downstream 41289 70269793 ~ 70270056 (+) True G77976
TU86222 lncRNA downstream 52006 70280510 ~ 70280734 (+) True G77977
TU86226 lncRNA downstream 58238 70286742 ~ 70286974 (+) True G77981
TU86229 lncRNA downstream 61832 70290336 ~ 70290578 (+) True G77984
TU86234 lncRNA downstream 73167 70301671 ~ 70301874 (+) True G77988
XM_036984226.1 mRNA upstream 5359 70163191 ~ 70188938 (+) False LOC110528418
XM_021610459.2 mRNA upstream 50603 70136830 ~ 70143694 (+) False chchd1
XM_036989830.1 mRNA upstream 71386 70122012 ~ 70122911 (+) True LOC118966712
XM_021610425.2 mRNA upstream 141380 70051483 ~ 70052917 (+) False zgc:153981
XM_036984301.1 mRNA downstream 1455 70229959 ~ 70404623 (+) False LOC110528470
XM_036984309.1 mRNA downstream 1455 70229959 ~ 70404623 (+) False LOC110528470
XM_036984320.1 mRNA downstream 1455 70229959 ~ 70404623 (+) False LOC110528470
XM_036984328.1 mRNA downstream 1455 70229959 ~ 70404623 (+) False LOC110528470
XM_036984337.1 mRNA downstream 147777 70376281 ~ 70404623 (+) True LOC110528470
TU83729 other upstream 1819368 68374505 ~ 68374929 (+) True G75747
TU81938 other upstream 3409328 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 3435313 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 3770216 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 3905828 66287679 ~ 66288469 (+) True G73515
TU86384 other downstream 343161 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 807966 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 3323112 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 3342562 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 4680721 74909225 ~ 74909806 (+) True G83836

Expression Profile