RNA id: XM_036984356.1


Basic Information

Item Value
RNA id XM_036984356.1
length 5886
RNA type mRNA
GC content 0.45
exon number 21
gene id camk2g2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70405340 ~ 70512273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actTTACCCCATACCCTTACCCTCATCTtgaccataacccttacctaccTCTAAACTTAACATTAACCCCTACCTTAACCGTTTTAAATGTAAACTTAAATTGGGTGACGTCAGAGTTCAGAGTCCTCCCAAGGATCCCGTTTAGACATCTTAGTTTTTTAGTATCTCCCTTTGAGTTTACGAGATCTCCCCCCGAATCCTGAGCGAGGCAGTCACCGAAACGAGAGGCGATACCCTCCTGCACAACATGGCTACAATTGTAACCTCGACCAGATTTACAGACGAATATCAGCTGTACGAGGAGCTCGGAAAGGGCGCCTTCTCCGTTGTCCGGCGATGCGTTAAAAAGTCCAACGGCCAGGAATTTGCTGCTAAAATTATCAACACGAAAAAACTCTCAGCAAGAGATCATCAAAAACTGGAACGAGAGGCCCGCATCTGTCGCCTGCTCAAACACCCCAACATAGtacGACTACACGAAAGTATCTCAGAGGAAGGCTTCCATTACCTGGTCTTTGACCTTGTCACCGGTGGAGAGCTGTTTGAAGACATTGTTGCCAGAGAGTATTACAGTGAGGCCGATGCCAgccagTGTATCAATCAGATCCTGGAGAGTGTCCACCACATGCACCAGCATGACATTGTGCACAGGGACCTCAAGCCAGAAAACCTGCTCCTGGCCAGTAAGCTGAAGGGAGCTGCAGTGAAGTTGGCTGACTTTGGGCTGGCCATCGATGTGCAGGGAGACGAGCAAGCATGGTTCGGTTTTGCAGGCACTCCAGGCTACCTCTCTCCAGAGGTCTTGAGGAAGGACCCCTACGGCAAGCCGGTGGATATCTGGGCCTGTGGTGTGGTCCTGTACATTCTCCTGGTGGGCTACCCTCCCTTCTGGGATGAAGATCAGCACAAGCTCTATCAGCAGATCAAGGCTGGGGCCTACGATttcCCCTCCCCAGAGTGGGACACAGTGACCCCCGAAGCCAAGAACCTGATCAACCAGATGTTGACCATCAACCCTGCCAAGAGGATCACTGCTGACCAGGCTCTCAAGCACCCATGGATCTGCCAACGTTCCACAGTGGCTTCCATGATGCACCGCCAAGAGACTGTGGAGTGCCTGCGCAAGTTCAACGCCAGGAGAAAACTCAAGGGAGCCATCCTCACCACCATGCTGGTGACCAGAAACTTCTCAGTGGGCCGACAGCACACCAGCCCTGCGGCCACCACCAGCACAGCTGCTCTTGCTTCAGAAGCATGCAAAAGTTTACTCAACAAGAAGTCAGATGGTGGAGTGAAGCCGCAGACaaacaacagtaaaaacagtGTAGTGAGCAGTACCAGCAGCACCAAAGACAGCAGCATATCATCTTCAGCACCAATGGGCTCTACAGAGAGCTGTAACATCacagaagaggaggatgtgaAAGGTAGGAAAGTGTCTGCGTGCGGGTCTAGCGTGGACAGTGCAATGGTCAGCCAGTGCAGTGCCAGTGAGGAACAGACCCAGGCTCAGCCCCCTCACTGCCCACCCGCCTCTCGCAAACAGGAGATCATCAAGATTACTGAGCAGCTGATTGAGGCCATCAACAACGGAGACTTCGAGGCTTACACGAGAATCTGTGACCCCGGACTAACCTCGTTTGAACCTGAGGCTTTGGGAAACCTGGTGGAGGGCATGGACTTCCACAAGTTCTACTTTGAGAACTTGTTGAGTAAGAACAGTAAGCCGGTCCACACCACCATCCTGAACCCCCATGTGCACCTGATCGGGGAGGACGCGGCCTGCATCGCCTACATCCGCCTGACCCAGTACATCGACAGCCAGGGGCGCCCGCGCTCCTGCCAGTCAGAGGAGACCCGCGTGTGGCACCGCCGCGATGCCAAGTGGCTCAACGTGCATTTCCACTGTTCAGGAGCGCCTGCCGCACCTCTCCAGTGAACCTTTATCAGACACAGctTTGCCTGAATTCGGAAGCCGATTGGAGCATTTTCTCAGTGGTCGGATTGGCGCCAAGAGCCCTGCCAGAAGAGAACGCTTGGAAGTTTAAAATCTAAGGGGAAAatataacaaaataaaatattttaaagcCGACCGActgacaacaccaccaccaccaatccAGTCCAACCCTAGCTATATGTTGGGGGCCGGCTGTAGCTGAAGCCCTGCCCTCCAGACGGTGCATGCTTCTGACGCCCACAGGGGGGCGCTGTCTTGTCCTTTTCCATGGATCCatattttttttgcagttttgaAAGTGTTTAAAGTATTAACATATGTAAAATAAATTATCAAAAAACCTTCACATTTAATCAGCAGGTATGGTAGTAATGATTAAAGAAAATAAATGTGAATTTTctataaaaaaaatagaaaaaggaGAACACCCTAATTTTTGTGgtggttgtttttttgttttgtttgtttcacagttAACATATCTAATTATTTCTGTTGCTGGATGCAAACAAATGCTAGAAGGGAACATTTCTGAAAAACAAAAAGCttgattcaatccgtatcgcaggTTCAGCGCTATGGcgcgattgaaatttaaaggtcaTTTTTATGATTGAGCGGACCGATGCATCGTTtgccgtgaatgcagtctccacgAACGCGAgcacattgcctttaaatttcaaacACGTTATAGCGCTGAACTTCCGCGATACGAATTGAACCAAGCTCTAAATTGTTACTTACAGTAATATCAACATTTTAGACATTGTTTTAATGTAGATGTTATCTTTTTATGGGTCGGGTGTGTTGCAGAAGGGACTCTTGTTTTTTAGTATTCTGATGTGTTATTGTGGACCTCTTCATTTTTATCCCCTGAATGATGctgtatttgaaagtattttgtgtgtgaagattttttttatttttatggggACTTTATTTAATATAGTAATGTATACATTCATATTTATAAGGAGAAAGACTTTACTTTCAGGGTTTGGATGCGTGTGTGAGAGTGAAGATGCGTTCTCATGTCCCTATAGCTCCCTTTTCAAGCTCGTTTGCGCTTTGAGATCCCCAGTGTATATGCACACATGCATGCTCACACAAGGCCCAAAATCCAGCTCACTGTGGTGTGCCCTTTGGGTATGTAGACCAGCCAGCTCCTCCAGCAACAGGCCACATTCTCCTGACCAGCACAACCTGAAGTTGCAGAACACTACTATTGGTTCAGTGTGCCGAGTTTGCCTTCTTCCTTGGGCCACTAGAGGGCACATGACACAATCAAGCCTACTGCTACTATTCTGACGGAGACCCCAAACCACAAACTCTGAAAGCTCGTACACCTCTCCTTCCTATTGTTTTCTACTCTGACTTTAACATGTTTGataaaacattttggggggggaAATATGGAAAAATTTAATAAAATCTAAAATGGCCGGTACTGTTTGGCACAAACTTGAGACTCAATGCTGTTCTGTTCACTCCCCGGATGAACGTTTCTGCAACTTCAGGTTAAGCTCACTTACTCCTGGGGTCTCTACCTGTGTTTCTGTAGTTAGTGACCCTGCTAATCAGCTTTCTATTAGCGCCACTCAGTGTGATATCACCCTTTGCCTGTCTCTCTTGTTCTGGTCCCTGTCCTGTTCTCGAACATTGTATATTGTCCGTCTTCGCTTGCCATACCTCTCTGTAAAGTCATTGGCACTAAAAGCATGTGAAAATGAAAATGCTGTAAAGTGGGGTGTTGAGTTGGCCAGTGGCTGGTGGTGGCATGTCGAACAGCTGGCTGGGGAAGGGCCGGGAGGTGGATCTGGGGGCCACGCTTAAGGCAATCAATGGATTGGTCCCTTTATCCCGGGTTTCAGTTGTAACTGTTCTAGATGTTAGTGTTTGTAATGTTGGTATTATTATGAATAATCCATTTCTTTTTGAGATTGGAGCTGGAAATATGGGGAGGCAGTTGAGGTGGGGGTTGGGGCTCAGGCAGCTGGCCAATCACACCCAAGCCTCCCCTGTCCAACCCAATTCCCACAATACACATATGtggaatcaacacacacacagtgcactcCCAATGCAAATTAtatttgaatatatatatacactgagcaaaaatataaacgcaacatgtaaagtgctggtcccatgtttcatgagctgaaataaagatcccagaaatgttccatactcacaaaaagcttaaaTATCTAACATTTtgagcacacatttgtttacatccctcttaatgagcatttctcctttgccaagataatacatccacctgacaggtgtggcatatcaagaagctgactaaacAGCATGGTTATTAATCTGGTGCTCcctgtgctgtggacaataaaaggtcactcaatctgcagttttgtcacataacacaatgttgagggagcgtgcaattggcatgttgactgcaggaatgtccaccagagctgttgccagaaaatgtcatgttcatttctctagcataacattttagagaatttggtagtacgtccaaccggcctcacaaccgcagaacacttgtaaccatgccagccctcctcatcctgcttcttcacctaagAGATCGAGGGGGCTGCTGCTGAGGAGCGTTCCTATGTTTTACCATTAACGGGAGGGAGGGTGCTTCTGAggagtatttttgtctgtaataaagcctttttgtggggaaagaacactgattggctgggcctggctcccagtgggtgggcctatgctctcctcccaggcccacccatggctgtgcccctgcccggTCATGTGATTAGAGCCTAATTTatgtatatgaactgtaactcagcaaaatctttgaaatggttgcgtTTATTTGTTTGTTATGAGAGACACACACTAAAAACAATCTCCCTTTAAAAACATATCTTTGTGATAATGGTAAAACATTGGAACACTGTTTTTCACTGTGTTGTAGCAACTTGTGACTTTGTACCGCCAGAGGGGTGAAGCTTGCTGTTAACCCCTTCCTTTCTGTGCTAAGCAGCTCCATAGTAATGGCGTTCCATTGAACCTGTGGAAGGCCGGGCACCGAAAAGACAACAACCTACCGATGAGACTCTTGGTCATAGAAAATGATATCAAAATATGTTGAATGAAACGCGTTAAAACAAAACCTGTGCTCGGTGTTCATATCATGGTCACAACTGGCCCCGCCCACCCTACTGCGCATCGTGACATACCTGCCATGAAACTGTTTCCCTTTTGCACCATAATGCAATGTATACAGtactgaactgtgtgatgtttTTTTGGCTCAAATAGTTTTTCCTGACTTTGTGCTGTGGgcactggcctctctctctctctcccactgggcCTGATGCTTCCATTCATTGCTTCGGTGTTCACACAGCCATGGGAATGAGAACTACTATGCTGTTTACTTCAACTCTTCAAAAGAATTCAAagggaagaagaagagagaaatagTTATTGAGGGAAGGATAGTTAACCTTGGATTATACTATAGCCTACCTAAGTAGCTAGCAGGACAGGAAGAGGGCCTTGATATACTTACAAAAACAAATACTGAAAAAGACATTAAAAGCCACACACTTTAACAACTATATATGCAGTTTTACAAGAGAAAGAAATATGCATGTCTACTTTCTGGTAATATTTTTCACTGTCTGTGTTTACTTGATTAAAAAAATGGAAATCTATATGTTACTTGCATCCTCAAGGTCAATGAAAATGTCTCCGTCTCAAATATTGAAATGAAGTGATatcacgtttaaaaaaaaaagtacaaaaaattaaataaaaaaaggtaTATTTACTTCATTGTAATCATATAGTAAGGATACATATGACTATACTCCGTTTTGATTTGGATGCTGGATTTTTGCAtgaatatataataaataaaaccATGACTTAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86700 lncRNA downstream 46618 70358503 ~ 70358722 (-) True G78419
TU86691 lncRNA downstream 48853 70356274 ~ 70356487 (-) True G78415
TU86688 lncRNA downstream 51469 70353429 ~ 70353871 (-) True G78412
TU86685 lncRNA downstream 57237 70347584 ~ 70348103 (-) True G78409
TU86663 lncRNA downstream 81772 70322921 ~ 70323568 (-) True G78389
TU86845 lncRNA upstream 133853 70646124 ~ 70653964 (-) True G78558
TU87121 lncRNA upstream 220080 70732351 ~ 70743072 (-) True G78807
TU87173 lncRNA upstream 310870 70823141 ~ 70877036 (-) True G78855
TU87194 lncRNA upstream 336425 70848696 ~ 70849537 (-) True G78874
TU87233 lncRNA upstream 388544 70900815 ~ 70902212 (-) True G78910
XM_036984207.1 mRNA downstream 293923 70095689 ~ 70111417 (-) True LOC110528401
XM_036984204.1 mRNA downstream 293924 70095689 ~ 70111416 (-) False LOC110528401
XM_036984194.1 mRNA downstream 316625 70082835 ~ 70088715 (-) False LOC118965321
XM_036984177.1 mRNA downstream 329442 70056552 ~ 70075898 (-) True LOC118965320
XM_036984184.1 mRNA downstream 338899 70056552 ~ 70066441 (-) False LOC118965320
XM_036984474.1 mRNA upstream 10639 70522910 ~ 70526933 (-) True si:dkey-174i8.1
XM_021610650.2 mRNA upstream 198603 70710874 ~ 70713631 (-) True cgas
XM_021610662.2 mRNA upstream 202352 70714623 ~ 70729159 (-) True eef1a1a
XM_021610675.2 mRNA upstream 221584 70733855 ~ 70745693 (-) True slc17a5
XM_021600040.2 mRNA upstream 248464 70760735 ~ 70766495 (-) True LOC110521978
TU86690 other downstream 49749 70354916 ~ 70355591 (-) True G78414
TU86511 other downstream 316626 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 317683 70085938 ~ 70087657 (-) False LOC118965321
TU86508 other downstream 319955 70082840 ~ 70085385 (-) False LOC118965321
TU88004 other upstream 809679 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 816753 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 864014 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 864014 71376285 ~ 71386523 (-) False G79616
TU88005 other upstream 864014 71376285 ~ 71386523 (-) False G79616

Expression Profile