RNA id: XM_021610650.2


Basic Information

Item Value
RNA id XM_021610650.2
length 2210
RNA type mRNA
GC content 0.45
exon number 5
gene id cgas
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70710874 ~ 70713631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTTCACAATCACATTTCATCAAACCAAAACAGCGAAGACGATCATTTCTCTGGCATAGTAGACACTAGTGGGTGTCGCATCACGATCATACATACTACAATGAGCGGGAGAGGGAAGACAAAAAAAAGTCCAGCCGGGCCCGCGCAAAGAGTCCAGCCGGGGCCAGAACCAGGGTGTGCCAAGAGTTTGGTTCGGGACAAGAATGGTTCAATTGGAGGTTGCCATGCAATGATGGACACTAAGGAAATGCAACAGATTCCCGAGGAAAATAAACCTAAGGAGCATAAGCAGCCTAAGTGCACCACTGAGGGAAAGCcaactgtgccaccagagaccggTTCAAGGATTGTTGACTCATATCAGGATAAGATCCTGTTTACAACACTTGATAAATTAAAGATTAAGATGACACGTAAATCGGAATCATCAAGAATTGTCAATGACGTGGTAAAGTGTATAAGTGACCACATGAAAAAGCGTACAGAATGCTTCAAAGATGTAAATGTTCTGGGCACTGGAAGTTACTACGAAAATCTAAAGATTTCTGATCCCGACGAATTCGACGTGATGTTTAATTTTCCGGTGGAGCGGGTGGACATTCGGCCATTTGGAGACGATGGAGCTTTTTATAGCGTGGCATTTAAACGGGGAAAACACTCTCTGGATCGCTTCAAAAATAGGGACAACACGGTATCTGCGAGTGAAATGCTGAAGGAGTTCAGAAACGAAGTTATAACGTCTGTGAAGAAACAGAAAGACGTGTTGgtggagaagaagaaaaagggtTGCCCGGCGGTGACCTTAATGCTAAACGGGACGGGAACTGTTCCCATCTCACTGGACATTGTTCTGGGACTACAGGTCAATTCGAGTTGGCCCACTTTCACCCAGGGAGGCTTCAAAATAGACACCTGGCTTGGGACCAAAGTGAAGAAAGATCTAAAGACACATTCATACTACCTCGTTCCGAAGTATGAGGGAAAGGGCACGGTGGAACTGGAAGGGGTCTGCGCCAAAGACTCTTGGCGCATCTCATTCTCGCATGTGGAGAAGAGTATCATAACAAATCATGGCTCCCAGAAGACCTGTTGCGAGGCAAGCGGAATTCGCTGCTGCAGGAAGGACTGTCTGAAGCTTCTGAAGCACCTGTTAAGCCTTTTGAAGGCAGAGGACCCTAGTCTGTCCAAGTTCTGTTCCTACCATGCAAAGACCACCCTTCTGCACGCATGCTGCTCCAGGACCAAGGACAGTGACTGGGAGGCGACGCAGCTGGGACCCTGCTTCCAGCAGCTGTTGAGAGACTTTGAGGGCCACCTGAAAGATGGCAAGCTCCCCAACTTCTTCATCCCCACACACAACCTGCTGGGCTCTGGCCACAACCGCAGGAGCTGCCTGATCCTGGCCCAGTGTATTGAGGAGCAGCGCAACAAAGGTTTCCCCATCTTCAGCTAGTGAGTCGGGACTACCTCAATCACTGCCCCCTTAGTGACTCACCCAGAGCCCCAATAGACATAAGTGGAGTATAGCTGTGGTCCCATGCTGTTATCTATGTTAAAAGCAATGGCATAGGCAGGAGGAATTGAAGAGCAGAGGAGAAAGGAGTCAGAAGTTACCATTTAATTCAGATCAGAACAGTTTTGAGTCTTCCCAGAGATGATACATGGAGAAGAGCAGTTGGCTTTCAAATTATAAAAAGGTAATTTAAACTGTCTGTAACACTATGAATTAttcaataaaacaaaaatgtgtaaCACAAAAAAGGATGAACGCTGGAGATTCCAGAACTGAAGTTGCAAGTTGCTTCTTCCTCTcctgaaaaagtaagaaacacaGATTTGACAATTGGCAAAAGGATATGGATATGAGCTGTCAGTGAGGATTTtttaactgtttaaaaaaaataaaacccaGGAAATCTTCCTACTAAGTACGTCAACACCAGctatatttggtgtgaccacacTGTCATATTATAGGACTCAAACGGTCTAACAGAGGGAATGTGTGTGCGATGTGAACGCACTGCATGTTCTGTTTTCCCACAGCATTTGTATTTCTGTTCAGCTTTTTCCACCAAAAGCGGTTTCTTTGTTAATGCATTGGAATTTAAGGCCTGAGGGCAGTGGTGTTTTCAGCTGAGTATCAATAAATTGCAACGTGTATGTGCCAAATATCCTACTTTTCAATAAAAGGGAATAAATTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86845 lncRNA downstream 56910 70646124 ~ 70653964 (-) True G78558
TU86700 lncRNA downstream 352152 70358503 ~ 70358722 (-) True G78419
TU86691 lncRNA downstream 354387 70356274 ~ 70356487 (-) True G78415
TU86688 lncRNA downstream 357003 70353429 ~ 70353871 (-) True G78412
TU86685 lncRNA downstream 362771 70347584 ~ 70348103 (-) True G78409
TU87121 lncRNA upstream 18720 70732351 ~ 70743072 (-) True G78807
TU87173 lncRNA upstream 109510 70823141 ~ 70877036 (-) True G78855
TU87194 lncRNA upstream 135065 70848696 ~ 70849537 (-) True G78874
TU87233 lncRNA upstream 187184 70900815 ~ 70902212 (-) True G78910
TU87322 lncRNA upstream 288686 71002317 ~ 71002542 (-) True G78995
XM_036984474.1 mRNA downstream 183941 70522910 ~ 70526933 (-) True si:dkey-174i8.1
XM_036984424.1 mRNA downstream 198601 70405340 ~ 70512273 (-) False camk2g2
XM_036984356.1 mRNA downstream 198603 70405340 ~ 70512271 (-) False camk2g2
XM_036984362.1 mRNA downstream 198603 70405340 ~ 70512271 (-) False camk2g2
XM_036984398.1 mRNA downstream 198604 70405340 ~ 70512270 (-) False camk2g2
XM_021610662.2 mRNA upstream 992 70714623 ~ 70729159 (-) True eef1a1a
XM_021610675.2 mRNA upstream 20224 70733855 ~ 70745693 (-) True slc17a5
XM_021600040.2 mRNA upstream 47104 70760735 ~ 70766495 (-) True LOC110521978
XR_005053647.1 mRNA upstream 51720 70765351 ~ 70765482 (-) True LOC118966765
XM_021610686.2 mRNA upstream 58404 70772035 ~ 70840706 (-) True rin2
TU86690 other downstream 355283 70354916 ~ 70355591 (-) True G78414
TU86511 other downstream 622160 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 623217 70085938 ~ 70087657 (-) False LOC118965321
TU86508 other downstream 625489 70082840 ~ 70085385 (-) False LOC118965321
TU88004 other upstream 608319 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 615393 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 662654 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 662654 71376285 ~ 71386523 (-) False G79616
TU88005 other upstream 662654 71376285 ~ 71386523 (-) False G79616

Expression Profile