RNA id: XM_021610675.2


Basic Information

Item Value
RNA id XM_021610675.2
length 2320
RNA type mRNA
GC content 0.48
exon number 11
gene id slc17a5
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70733855 ~ 70745693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAAGGAGAAATGGACCTCACACCGGTTCCTTTCCAAACTTCCGTTCACAGTTCTCGTGATTCAATTGTTCATATAGCTAGCTCAGTTCATTCAATTCTAACTGCAGGTATGGCATCTCAAAACATTGAACTCTGATGTGCAATGGACCGATATATATCGGACACGGAGACCGATGACCAAGAACAACCGTTGTTGCTCAGTCGACAAGATGATAAAGTCGAAAGAGcccctgCGTGCTGCTCTTCGAGGTACGGTCTGTCCCTGCTCTCCTGTTATGGTTTCTTTGTGGCCTATGCCCTTAGGGTCAACCTCAGCGTTGCCATGGTGGACATGCTTAACAACACAGACGCCAGCGGCAACACCAGCAAATCAGTATGTCCTGCACACTCCAGCCCTGCTCGCCCCATATACAACCACACTGCCAGTGTGTATGACTGGGACTCTGAGACCCAAGGCTGGATCCTGGGCTCCTTCTTCTACGGCTACATCCTGACTCAGATCCCAGGGGGCTACCTGGCACGCAAGTATGGGGCCAAATGGCTACTGGGCCTAGGAATCCTGGGAACTGTGGTTTTCACCCTCCTCACCCCCATGGCTGCCGACCTGGGTGCAGGCTACCTTATCGCTGTCAGAGTGCTGGAGGGTATTggagagGGAGTGACGTTTCCAGCCATGCACGCCATGTGGGCATTTTGGGCCCCACCAATGGAGAGGAGCCGATTGCTCACCATCGCTTACACTGGTGCTCAGCTGGGTACAGTGGTTGCCCTTCCCCTATCTGCTCAGATCTGCTTCTACCTTGACTGGACCTGGGTCTTCTATATCTTTGgtattGTGGGAATTGTGTGGTTCATCCTGTGGgcgctccttgtcagtaacactCCCAGCACACACCCGCGGATCACAGAACAGGAGCGACTCTACATCACTTCCTCCCTGAATAAGGAGCTCACTTTGTCGGGTGACCACATCCCCTGGGGGTCCATCTTGACATCCATGCCGCTGTGGGCCATAGTAGTGGCTCACTTCTCCTACAACTGGACATTCTACACACTACTCACTTTGCTGCCCACATACATGAGTGATGTATTGGGCTTCAGCATCAAAGAGAACGGTGCGCTGTCGGCTCTGCCCTACATTGGCTGTGGGCTGCTGGCCGTGCTGGGTGGCCAGCTGGCTGACTACCTGAGGGAGAACTGCTTCTACCGGACTGTGGTTGTCAGGAAGGCCTTCAGTCTCGTAGGTATGATTGGGCCGGCAGTGTTCATTGTGGCTGCTGGGTATACAGGCTGTAACTACATCCTGGCAGTAGCCTTcctttccatctcttcctccctgggAGGAATCGTTGCCTCCGGGTTCAACATCAACCATCTCGACATCGCTCCATCTTATGCTGGGATTTTGTTGGGAATCACCAACTCCTTTGCCACAATACCTGGTATGGTGGGACCAGTCATAGCAAGAGCCTTGACCAAAAATAACACTATAGAGGAGTGGCAGACAGTGTTCTACATCTCTGCTGGGATCAACCTGTTTGGAGCGGTTTTCTACACGGTGTTTGGTCAAGGCGTGGTGCAACCCTGGGCTGTCCACAATCCCCATTCCCATGGCAACTGAGGGGGACAAAGGGTGACACCCTGTGGACCAAAATGGACTCGCAGCCATGGGACCGTTTCAACCAAGCTATTCTACACACAACCCTAGTGGGGAAACAGCCTTCTAAAGTAACTTCTAATATTTTAATGTTTTTAGTTTTGGTAAGTGGACCCAATAATGGGTATAtgtgcattttttaaaaatcaattaCAATTTTAGTCTTTGTGTAGGCTCTTGTGATATAACCACATTTAGTGTTTTACTTTGTTTACAGGTAAGAGTTTGCTTGTTTTTAAATTCCTTTACATTTCAAGTCTTACATGAACTGACATCAGACAAGTAGCATTTCCATTTTGTCATTTGTTTCTCCTCTGTTAGATGCTCAGGAGAAAAAAAAGCCATATAAATTAAAGTTTTTGTATGTAGCAGAGTTATTGCCAACTGAAAGAGCACAGTCACCCAGGATAGAATCCATGTGGGTTTCTCTACTTGTgagaaacttgttttttttttgtccttcCGCTTGTGCCTAAAGTAGAGAACTATGATCATCAACCCAGTATATCTCATCTAATCAATACAGGTGACAGAGTACTGATAAACAGCCGTATTCCCTGTGTAAATGTGTCTACCATCCAAATCTGtcttaatttatttttttttactgatcAGTTATGTTTACTTGCTGAACCAACTACAATGAAGGAGTTTTAAAGGG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12301 SLC17A5; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86845 lncRNA downstream 79891 70646124 ~ 70653964 (-) True G78558
TU86700 lncRNA downstream 375133 70358503 ~ 70358722 (-) True G78419
TU86691 lncRNA downstream 377368 70356274 ~ 70356487 (-) True G78415
TU86688 lncRNA downstream 379984 70353429 ~ 70353871 (-) True G78412
TU86685 lncRNA downstream 385752 70347584 ~ 70348103 (-) True G78409
TU87173 lncRNA upstream 77448 70823141 ~ 70877036 (-) True G78855
TU87194 lncRNA upstream 103003 70848696 ~ 70849537 (-) True G78874
TU87233 lncRNA upstream 155122 70900815 ~ 70902212 (-) True G78910
TU87322 lncRNA upstream 256624 71002317 ~ 71002542 (-) True G78995
TU87790 lncRNA upstream 273886 71019579 ~ 71019802 (-) True G79423
XM_021610662.2 mRNA downstream 4696 70714623 ~ 70729159 (-) True eef1a1a
XM_021610650.2 mRNA downstream 20224 70710874 ~ 70713631 (-) True cgas
XM_036984474.1 mRNA downstream 206922 70522910 ~ 70526933 (-) True si:dkey-174i8.1
XM_036984443.1 mRNA downstream 221586 70410099 ~ 70512269 (-) True camk2g2
XM_036984461.1 mRNA downstream 221587 70410099 ~ 70512268 (-) False camk2g2
XM_021600040.2 mRNA upstream 15042 70760735 ~ 70766495 (-) True LOC110521978
XR_005053647.1 mRNA upstream 19658 70765351 ~ 70765482 (-) True LOC118966765
XM_021610686.2 mRNA upstream 26342 70772035 ~ 70840706 (-) True rin2
XM_021610706.2 mRNA upstream 106229 70851922 ~ 70857743 (-) False si:dkey-187a12.4
XM_036984496.1 mRNA upstream 106229 70851922 ~ 70857768 (-) True si:dkey-187a12.4
TU86690 other downstream 378264 70354916 ~ 70355591 (-) True G78414
TU86511 other downstream 645141 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 646198 70085938 ~ 70087657 (-) False LOC118965321
TU86508 other downstream 648470 70082840 ~ 70085385 (-) False LOC118965321
TU88004 other upstream 576257 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 583331 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 630592 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 630592 71376285 ~ 71386523 (-) False G79616
TU88005 other upstream 630592 71376285 ~ 71386523 (-) False G79616

Expression Profile