RNA id: XM_021610706.2



Basic Information


Item Value
RNA id XM_021610706.2
length 1177
RNA type mRNA
GC content 0.51
exon number 4
gene id si:dkey-187a12.4
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70851922 ~ 70857768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGCGCCCGGGTAGGATGAATCGAGCTCCCTCAATGTTCTCGCAACATTACTGTGACGTTGTTGCAACGTGATATCGTGCTATGGCTGTGGACTGTTTGATAACCACTTCCGTTTTCCCCTCACTAGTCCACATTTGCGTTTACCTTGAACGATAGAAAGACATTGTAGAAAGGTTTTTGTTGGTTTAAACTAACGTTGAGGAGGTCGACTGTTTGAGGAATTTTATGGAGCATAATAATGGAGATACTTCTAGCTGGGCGATGCAGCGACGTATGGAAGGTTTGGTCAACAAACACATGGCAGACATAGCTCTTGAAACACTCCAGCAGAGACTTTCAGCTGTGTCCGACGAAATGAACAATCTTGCGGAACATGTCTCGAGACGCTCGGAGGATATTCCCAAAGATGATATTTCAAGACGACCTGATGTCAACTTTGACGTTGAGTCCCTGAGTGCGACGTTTAGCACGGGTGGTGTTGGGGAAAAGTTGTTGATGCCAGGTACCTCGTCATCAGCAGAGACAGCTGCCCAGCGTAAAATAATCTCCTTGCTGGTGGAGATCAAGGAGGAGCAGCAGAGACAGTGGGCAGTGTTGAGGGAGCTGCAGGCCAGGGTTCAGGGCCAGAGCTTTacggaggtagaggaggaggtggaggctcTAGACATCGACATCCCGCTGAGGACCATGGAGCAGCTAGATGACACAGAGAGGCACCTGGAGGATGCCGGAGCACAGAAGAGAATGgtGTCTCACCTGTCACGGATGGGCGGGGCCACAGTGGATGATGCAGTGCGAAGGCTCATGCAGGCTGTGCTATCTTTTGCTGTGGGCTCTGAGCTCAACTGGGTGGGCCGCGGCCAGAAAAGGAGCTTCAGAAACACCCGCCTCCAAGGGGTTCTCTTCCGTGCTCTGAAAAGAACCCCTGTGGGCAAAGAGGCCACACATCATCAGTTTGCAGACGTGGTGAAGAAATGGCTGCGGTACACACCGttcagacagggagggagtggtCGACGACTTTACAAACCACCTGTCGAGTTCCTGTGTCCAAATGAATGTGTAGGTCTGCCTACACATCTGCCTACACATCCACAGTAACGCTCAACCAGCTTACCGTAAAACTTCAATTACATAGCCCGTGCATTTATTTGCttaaatcactgaacacaacagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87194 lncRNA downstream 2385 70848696 ~ 70849537 (-) True G78874
TU87121 lncRNA downstream 108850 70732351 ~ 70743072 (-) True G78807
TU86845 lncRNA downstream 197958 70646124 ~ 70653964 (-) True G78558
TU86700 lncRNA downstream 493200 70358503 ~ 70358722 (-) True G78419
TU86691 lncRNA downstream 495435 70356274 ~ 70356487 (-) True G78415
TU87233 lncRNA upstream 43072 70900815 ~ 70902212 (-) True G78910
TU87322 lncRNA upstream 144574 71002317 ~ 71002542 (-) True G78995
TU87790 lncRNA upstream 161836 71019579 ~ 71019802 (-) True G79423
TU87799 lncRNA upstream 175193 71032936 ~ 71033152 (-) True G79432
TU87830 lncRNA upstream 222518 71080261 ~ 71080561 (-) True G79463
XM_021610686.2 mRNA downstream 11216 70772035 ~ 70840706 (-) True rin2
XM_021600040.2 mRNA downstream 85427 70760735 ~ 70766495 (-) True LOC110521978
XR_005053647.1 mRNA downstream 86440 70765351 ~ 70765482 (-) True LOC118966765
XM_021610675.2 mRNA downstream 106229 70733855 ~ 70745693 (-) True slc17a5
XM_021610662.2 mRNA downstream 122763 70714623 ~ 70729159 (-) True eef1a1a
XM_021610716.2 mRNA upstream 5370 70863113 ~ 70961979 (-) True slc24a3
XM_021610726.2 mRNA upstream 162740 71020483 ~ 71023873 (-) True soul2
LOC110532621 mRNA upstream 253107 71110850 ~ 71113278 (-) True LOC110532621
XM_021610759.2 mRNA upstream 407220 71264963 ~ 71280433 (-) False fancl
XM_021610766.2 mRNA upstream 407220 71264963 ~ 71280433 (-) False fancl
TU86690 other downstream 496331 70354916 ~ 70355591 (-) True G78414
TU86511 other downstream 763208 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 764265 70085938 ~ 70087657 (-) False LOC118965321
TU86508 other downstream 766537 70082840 ~ 70085385 (-) False LOC118965321
TU88004 other upstream 464207 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 471281 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 518542 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 518542 71376285 ~ 71386523 (-) False G79616
TU88005 other upstream 518542 71376285 ~ 71386523 (-) False G79616

Expression Profile