RNA id: LOC110532621


Basic Information

Item Value
RNA id LOC110532621
length 1438
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110532621
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71110850 ~ 71113278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aTGCTCGCCGTAGCccggccagtgcggcgaggtggaacagaatctcctcccaagtccagttcTCCAGGTGTCAATGGAGGCTCCCATTCCCTGTACTCCAGTGTGGGGGATGATGTCAGTCTGCCGTGTACCAATGTGGTCCACCCTGACTGCTCCTCTACAGTGTGGCTCTTCAGCAGAACTGAGTCTCACAGTGCTACTGAAAAGGTCTTTCAAGGGAAGATCCAAAATGAAGGAAACGAGGGCAGTGAGAGACTGGGAGTAGGGTCTGACTGCTCACTACGTGTTCGTAACATTGGCACTGAGGATACTGGAGTCTATGTCTACCGACAGTATGGCTGAGCAAATCTTGGAGAGGATActactgtctacctgtctgttctCACCATCTCCATGTCCACACCAGAGACAGATCTAAAGTATCCTAGAAATGTAACATTGAGGTGCTCTCTGCTAACATATGGCGGTCCTGTAACGTGTGACTCCTTCGTTAGAGATATTGTTAGGGTGAGCTGGGTGAATGAGACAGGTGGCGAGTTGCAGGGAGACCCCAGATACCAGGTCACACGGGTGTCTGGCTGTGACATCACTCTGACTGTGAAACTTTGGAGAAAGGATAAGAACAGGAAGTGGTGGTGTCAGCTGACTGAGGGAACGAGGAAGACATTTGTCTACCTCACTTCTAAGGTCTCAGGTGGGACTATGGATCCTGTCGGGACAATCATCACTGCTCCACAACAACCTATTGATGGTGAAAGTCCTCCAAAGCCCTCTCATTCAGGTACCAACAACATCAATGAGTTGCCAATCAGTCGCATAGTGCTCTGTGTGGCACTGCCCTTGATGGTAATTGTATATGCAGTTTACACAACTAGGAGGAACCGCCCACTAGCAGAGGTGTCCTCTGTTATAGAGCTGTAAGTCAAGACGAACAACCCCCTCCTCGTCACTCTCCATAGCATAGCGCCAAACTTACTCTACCTTCAATGAATGTGTACAACTGCGATATTATTTGCTGAAGGATTCGTGCTGACATAATACATAAAGGctttgaaaaaaataattaaaatgtgGTGCATGCTAATGGTATCCACTCAATGGGTAGTGACAGTTAATGCTTTACAAATAAAGACGTTATATTTCTGTTTTGTAGCTAGCATTAGTGTTGTCAATTGCCTAAGAGGAAGGGGAATGCTTACCTGTGATACTGCAAAACATTCTCTAAAATTTCTACTGCATTTCTCTAAATCAGTCTTTCATTACCAGCTTCTataatctacagtataatgtgtgttgtgtgtgtgtgtgtgtgtgcaagtgcgtgcttgtgtttttgtgtgtttgttttttagcGTCCATTAAGCTTGCTTACTCTCGCTCCGATTACACTGTATTTGATTTACGACCTTGTGTCActgcatctctctgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87830 lncRNA downstream 30289 71080261 ~ 71080561 (-) True G79463
TU87799 lncRNA downstream 77698 71032936 ~ 71033152 (-) True G79432
TU87790 lncRNA downstream 91048 71019579 ~ 71019802 (-) True G79423
TU87322 lncRNA downstream 108308 71002317 ~ 71002542 (-) True G78995
TU87233 lncRNA downstream 208638 70900815 ~ 70902212 (-) True G78910
TU87863 lncRNA upstream 5362 71118640 ~ 71127069 (-) True G79493
TU87874 lncRNA upstream 22112 71135390 ~ 71156648 (-) True G79503
TU87884 lncRNA upstream 33790 71147068 ~ 71148132 (-) True G79513
TU87909 lncRNA upstream 72680 71185958 ~ 71186500 (-) True G79538
TU87941 lncRNA upstream 109814 71223092 ~ 71223323 (-) True G79565
XM_021610726.2 mRNA downstream 86977 71020483 ~ 71023873 (-) True soul2
XM_021610716.2 mRNA downstream 148871 70863113 ~ 70961979 (-) True slc24a3
XM_036984496.1 mRNA downstream 253082 70851922 ~ 70857768 (-) True si:dkey-187a12.4
XM_021610706.2 mRNA downstream 253107 70851922 ~ 70857743 (-) False si:dkey-187a12.4
XM_021610686.2 mRNA downstream 270144 70772035 ~ 70840706 (-) True rin2
XM_021610759.2 mRNA upstream 151685 71264963 ~ 71280433 (-) False fancl
XM_021610766.2 mRNA upstream 151685 71264963 ~ 71280433 (-) False fancl
XM_036984523.1 mRNA upstream 151685 71264963 ~ 71282788 (-) False fancl
XM_036989840.1 mRNA upstream 562753 71676031 ~ 71683123 (-) True LOC110532628
XR_005053622.1 mRNA upstream 695661 71808939 ~ 71808991 (-) True LOC118966745
TU86690 other downstream 755259 70354916 ~ 70355591 (-) True G78414
TU86511 other downstream 1022136 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 1023193 70085938 ~ 70087657 (-) False LOC118965321
TU86508 other downstream 1025465 70082840 ~ 70085385 (-) False LOC118965321
TU88004 other upstream 208672 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 215746 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 263007 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 263007 71376285 ~ 71386523 (-) False G79616
TU88005 other upstream 263007 71376285 ~ 71386523 (-) False G79616

Expression Profile