RNA id: XM_036984515.1


Basic Information

Item Value
RNA id XM_036984515.1
length 2821
RNA type mRNA
GC content 0.48
exon number 14
gene id vrk2
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71248102 ~ 71266030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAAAATTATCCAAACTCTAATGGTTCATATTGCTGGCTAGCCCCATGGCCCCTCCTAGGAAACGagcattgcctgcacccctaccAGACGGGTTTACACTGATCGACACTGAGAAGAAGCAATGGAAACTGGGCAGAATTATTGGCCAAGGAGGTTTTGGATTGATCTACCTAGCTTCGCAGGACATGGAAATGCCTGTTGGGGAGGACTCTCATTTTGTGATTAAAGTGGAGTACCATGAGAATGGTCCTCTGTTTTCTGAGCTCAAGTTCTATCAGAGGGCAGCTAAACCTGAGAACATGCAGAGGTGGATGAGGAGCAAGACGCTGGATTTTCTGGGGATCCCTGCATACTGGGGATCAGGACTGGCAGAACACAACGGAACCAGGTACAGGTTCATGGTGATGGACCGCCTGGGCAGTGACCTGCAGAAGGTGTGTGAGAGAAACGGTGGCAAGCTGAAGAAGCACACAGTACTACAGCTAGGACGTGTCCTGCTGGATGTGCTTGAGTATATCCATGACAACGAGTATGTCCACGCAGACATAAAGGCTGCCAACCTGATGCTTGGTCACACAGACCCTGACAAGGTGTACCTGGCTGACTACGGCCTGTCCTACAGGTACAGCCCAGACGGCGTACACAAAGAGTACAAAAAGAACCCAAAAAAGGGACACAACGGAACCATAGAGTACACCAGCATAGATGCCCACAATGGAGTCGCTCCATCGAGACGTGGAGACCTGGAGGTGTTGGGCTTCTGTCTGCTCCACTGGCTGTGTGGGGCGCTGCCCTGGGACTCTGTGCTCAAGAACCCTATACAGGTCCAAGAGGCCAAGACCAGACTCATAGGTAATCTACCTGGTTCGGTGCAGGAGCTGTCGGTGGGTGGAGCTTGCACAGatGAGTTGGCCAGTTTCCTGCTCAGTGTCAAAGCTCTGGAGTATGAGGAACGTCCGGACTACCAGAGGCTGAGAGAGCTGCTGTCTGAGGCGGGACCGAGGGTGAGCGGAGGCCAGGGAAGGCTGGACCTGTCTGTGCCACGAGGAGCAATGTCAGGGGGTTCCTCCACCAGAGGGTCTGATTGGCCAGACAGGGGCAAGAAAGCAGGCCGAGGTAGAGGCTCATCCAAACTAAAGCCCGTAGTTGTGGTGGATGAGGAGAGTGATGAAGAGGATGAGAAGATGGAGTTGGATGAAGCAAGGCCCAAACCTGTACCACCCAAGGGCGTAAAGAAAGCGGGCAGGGCTAAACCTGCAACTAGAGGGGCCTCCAAACCAAAGCCTATATATGTGGAGGATGACAGTGATGAAGAAAAGATGGAGATTGAAGAGGGGAGACCCAAGCCTGGACCATCTCGCTACATTAGGGGACCACCAGTATCCAACCCCCAGTCAGAACATGGGAAAGCAGGACGAGCTAGAGGGTCGTCCAAACCAAAGTCTGTATATGTGGAGGATGAcgagagtgaggaagaggagatggagagacccAGACCTGTGCCGTCTCAATACATCAGAGGACCACCCAAATCCAAGCCCCAGCCAGAACAGGCGGTGAGGCCAAGGCACTAAGTCCTGCAATATTGACAGGATTCTACTAGAATGTTGTCAAACTGGTTTTACAAGAATGGACAAAATGACCAGCTACTTTACATTGACGCCCAACTGATAATGAAATACGTTTTATCAGAGCAAGTTCAAACCCAAAATAAATCACTTTTTTAAATtgtgattatatattttttttaattgcctTTGTTGTAATTTCACATTAACGGCTGTTACAAAAGTTCAGGTCAATGGAAGAAACCCAAGCAAATGTGTGAATTATCCCCTAACAGAAAACATCAACACAAACCAAACGTTGCGTCAGGAAAATAGTTGCTGATGACGGTGTTGCTGTGACCTCAAGACCACAAGTCAACCATAGACTGTTCCAACCCAGAGAAAGTACAACCCCTACAATAAGCAAATTGGGTCAAACACATGATGACCAGTGGGAGGACCACAGTCAGACACACTGGGAAAAACATCTGTACAAAGAGGATGGTTCAGAAATCTTCAACCATGACCACCGGTGTGGGGGTAAGAGTAATAAGCACAATCCCCCAGAATCTGACCACTGGGAAAGTCCCATCCACATATATGACTATGGTGAGTGGGAGGAATACAGCCACAAAGACCATGGCCAGAGAGCAGAGCCTTCTCCCAAACAGAAGAGTGGCTGTAATGTCACACTGTACTGTAGTGCCTTGGTGGTCTTATTCCTGTCCCTGGCCTTTCTATTCACTCTGACTGACAGTCCTGAATGATGACTTGGTGCCCTTTCCCTGCAGCTCTTTgagctttttttgttgttgcctattTTAGGTTTGCATCATCCCCAACTCTTACTCCAGTTTGCTATAGTGTCATGACGTGAGTGAGACGATATACATTAGATGAGATGTATTATGGATTTGCTGAGGCTCATGTTAAACCTTATAGCTCTATGCCCAGGCTTCAGTCAGCTCTCAGGGTTTCTGGGTGGACATCTTCACTGTGATGGGCTGTAAACAACAAAagtaaaaatgtaatttaacatgGACTACATTGTCAAAACAGGCTCGCTGTATCAATtactaaaaaaaaaactattttgatTTGCAACTGTACCTCTGTAAGACTATAGAAAATCCCCAGTGTGATTTATGCGTGACTGTTGTATAATATACTAACCAAGGACATGGTACCTCCACACTACTAAATGTGATCTGCTATATTCAATGTACTTATTATTGTGCATGAACAGCGCTCTATATTACCCTTTTTTAAACT

Function

GO: NA

KEGG:

id description
K08816 VRK; vaccinia related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87419 lncRNA upstream 94297 71115298 ~ 71153941 (+) True G79091
TU87423 lncRNA upstream 120765 71119139 ~ 71127473 (+) True G79094
TU87390 lncRNA upstream 166313 71081670 ~ 71081925 (+) True G79063
TU87388 lncRNA upstream 168352 71079627 ~ 71079886 (+) True G79061
TU87364 lncRNA upstream 198488 71046714 ~ 71049750 (+) True G79037
TU87628 lncRNA downstream 142311 71408341 ~ 71408790 (+) True G79270
TU87647 lncRNA downstream 172890 71438920 ~ 71439504 (+) True G79286
TU87666 lncRNA downstream 199828 71465858 ~ 71466257 (+) True G79305
TU88176 lncRNA downstream 351830 71617860 ~ 71618116 (+) True G79778
TU88177 lncRNA downstream 353237 71619267 ~ 71619497 (+) True G79779
XM_021610738.2 mRNA upstream 171999 71036440 ~ 71076239 (+) False ccdc85a
XM_021610639.2 mRNA upstream 536760 70679883 ~ 70711478 (+) True ddx43
XM_036984487.1 mRNA upstream 571047 70555702 ~ 70677191 (+) False kcnq5a
XR_002474288.2 mRNA downstream 14431 71280461 ~ 71323276 (+) True LOC110528637
XM_021610797.2 mRNA downstream 698760 71964790 ~ 71978789 (+) True asrgl1
XM_021610836.2 mRNA downstream 742477 72008507 ~ 72040224 (+) True LOC110528701
XM_021610864.2 mRNA downstream 850652 72116682 ~ 72167413 (+) False tp53bp2a
XM_036984729.1 mRNA downstream 850652 72116682 ~ 72167413 (+) False tp53bp2a
TU87354 other upstream 172136 71036470 ~ 71076102 (+) True ccdc85a
TU86384 other upstream 593277 70571665 ~ 70654961 (+) True G78121
TU83729 other upstream 2873309 68374505 ~ 68374929 (+) True G75747
TU81938 other upstream 4463269 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 4489254 66756207 ~ 66758984 (+) True G74067
TU90667 other downstream 2285586 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 2305036 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 3643195 74909225 ~ 74909806 (+) True G83836
TU92479 other downstream 3846630 75112660 ~ 75114190 (+) True G83829
TU92648 other downstream 3878834 75144864 ~ 75145512 (+) True G83979

Expression Profile