RNA id: TU87917


Basic Information

Item Value
RNA id TU87917
length 3394
lncRNA type read_through
GC content 0.45
exon number 2
gene id fancl
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71263171 ~ 71282788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATCCACTGTCGCCACGGTGATTAATGCCTCAGCATCATTAACATTCCGAAGAGCAAAGTTTACTTTACCAGATGTTGAAATTGTACCTGCCATCCTCTTTTTAATGGATCGCTTGGAGAGAAAAAGGGCTTCTCGTTACATGAAAAGAAATAtgcaaacagagagagggaagggggacactggtagagaggggatagacaggaGGAGAGCTACTAAGAATGTCTCCTGTAGAGTTTCAGTGCGGAGTGTGGGATCTGTTACGCCTACCGTCTGGAGTCGGCCATTCCTGATCAGGTGTGCAACGACCCTCGCTGCGGCCAACCCTTCCACCAGGCCTGTCTGTACGAGTGGTTGCGTGGACTACCTTCCAGTCGCCAGAGCTTCAACATAGTGTTTGGAGAGTGTCCCTACTGCAGCAAGGTATTTCAAGCCGCCATATGGCATTAAGACTCACTTTACAGTTGATGTCCTTCTTAAAAAGGTCATATAAACATACCTTATATAGTCTTCATATAATGTGTCATTCATAAAGTTTAAAAAAGGGTAATATAGAGCGCTGTTCATGCACAATAATAAGTACATTGAATATAGCAGATCACATTTAGTAGTGTGGAGGTACCATGTCCTTGGTTAGTATATTATACAACAGTCACGCATAAATCACACTGGGGATTTTCTATAGTCTTACAGAGGTACAGTTGCAAatcaaaatagttttttttttagtaATTGATACAGCGAGCCTGTTTTGACAATGTAGTCcatgttaaattacatttttactTTTGTTGTTTACAGCCCATCACAGTGAAGATGTCCACCCAGAAACCCTGAGAGCTGACTGAAGCCTGGGCATAGAGCTATAAGGTTTAACATGAGCCTCAGCAAATCCATAATACATCTCATCTAATGTATATCGTCTCACTCACGTCATGACACTATAGCAAACTGGAGTAAGAGTTGGGGATGATGCAAACCTAAaataggcaacaacaaaaaaagctcAAAGAGCTGCAGGGAAAGGGCACCAAGTCATCATTCAGGACTGTCAGTCAGAGTGAATAGAAAGGCCAGGGACAGGAATAAGACCACCAAGGCACTACAGTACAGTGTGACATTACAGCCACTCTTCTGTTTGGGAGAAGGCTCTGCTCTCTGGCCATGGTCTTTGTGGCTGTATTCCTCCCACTCACCATAGTCATATATGTGGATGGGACTTTCCCAGTGGTCAGATTCTGGGGGATTGTGCTTATTACTCTTACCCCCACACCGGTGGTCATGGTTGAAGATTTCTGAACCATCCTCTTTGTACAGATGTTTTTCCCAGTGTGTCTGACTGTGGTCCTCCCACTGGTCATCATGTGTTTGACCCAATTTGCTTATTGTAGGGGTTGTACTTTCTCTGGGTTGGAACAGTCTATGGTTGACTTGTGGTCTTGAGGTCACAGCAACACCGTCATCAGCAACTATTTTCCTGACGCAACGTTTGGTTTGTGTTGATGTTTTCTGTTAGGGGATAATTCACACATTTGCTTGGGTTTCTTCCATTGACCTGAACTTTTGTAACAGCCGTTAATGTGAAATTACAACAAaggcaattaaaaaaaatatataatcacaATTTAAAAAAGTGATTTATTTTGGGTTTGAACTTGCTCTGATAAAACGTATTTCATTATCAGTTGGGCGTCAATGTAAAGTAGCTGGTCATTTTGTCCATTCTTGTAAAACCAGTTTGACAACATTCTAGTAGAATCCTGTCAATATTGCAGGACTTAGTGCCTTGGCCTCACCGCCTGTTCTGGCTGGGGCTTGGATTTGGGTGGTCCTCTGATGTATTGAGACGGCACAGGTCTgggtctctccatctcctcttcctcactctcgTCATCCTCCACATATACAGACTTTGGTTTGGACGACCCTCTAGCTCGTCCTGCTTTCTGTGGGGAAAAGATACAAGAAGACCGGATTGAGCTAGCATGCACTAGTTTATGACAACATACTCCTGGACATTTCCTGCTTGTGAATTCACTAGCACCTTACCCCATGTTCTGACTGGGGGTTGGATACTGGTGGTCCCCTAATGTAGCGAGATGGTCCAGGCTTGGGTCTCCCCTCTTCAATCTCCATCTTTTCTTCATCACTGTCATCCTCCACATATATAGGCTTTGGTTTGGAGGCCCCTCTAGTTGCAGGTTTAGCCCTGCCCGCTTTCTGTGGGGAAAGGACACCGGAATAATTATTTCATGTGACGCAAACGCACAACTGAATGAAAACATACTTTTACTCCTGTTGTCAACACTTCAGAATAAAAGGGCATTTCTCCATGTGTGTCCACTACTGTACATTCCAATACATTTATTTTTGGGTCATATTGTTCTAAAACCAGTTGCAAACAGCTCAGTAGTAAAGTTTAGTGAATCCCGTTTATAGCCAACACCTTTACGCCCTTGGGTGGTACAGGTTTGGGCCTTGCTTCATCCAACTCCATCTTCTCATCCTCTTCATCACTCTCCTCATCCACCACAACTACGGGCTTTAGTTTGGATGAGCCTCTACCTCGGCCTGCTTTCTGTGGGGAAAGGATAcaggaagagagggtgaggggcTTAGTAAGAGGCTAGCATGCAACTGTTTCTGATAGTAGAAACTTGCTTGATTCTCCATTGACCAGGAGAAGGCCACCTACTGTGTTGAAGACGAAGCATTGTTCACTGAATTATTCATTTGTCTTTGGATGATGAAGATAAATAATAATATGGGAGTCCGTACAGGACAAATGATGGGACAACGACTAACTACctattggatatcatgaaatcgGGGAGGAAAAAGGAGTAAATAACAATAGAGTAGGACAGACACTGAAAGCAGCCTTTTACATGACCCCTATTAATTCGACTGACATTTACTCACTTTCCAAACCTCCAAAAATTGACTTCTATTTGACTACAGATCCAACTGCCCAGCAGTTCAGCATGGAAATTAGAGAAAATTAGAACAATTATGGCTGCTGATCCTCTGCCCCTGTAAAGTGTGTGTAAAGTGTGTGTCATCAATCGCCTCAAATTGGGCTGTTTTGGCCATCTGCGGGTCAAGTTAGTCACCATTGGAGGCTCAAGTGATTCCggtaaattccagaaaatcaccaCCTCTCCGCTCCAGAGCCTCTTGAGGGGGACGAGGTTTGCCTCCGTGGGGGTCAGGGGCAAGTTGACCCCCTTTACTGCGGTCAAGATCCCCGCCAGGCATTTAGAGAAGAAAATGTGATTCACCTCTACACCGCTATGCAAAGAGCCAGAGAGATGACATATTTGGTACAGTCCAATTGAAATGCACATATTTGATGAGAAATACTTTCtggagtgtatgtgtgttgtaAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87952 lncRNA downstream 28396 71234461 ~ 71234775 (-) True G79576
TU87941 lncRNA downstream 39848 71223092 ~ 71223323 (-) True G79565
TU87909 lncRNA downstream 76671 71185958 ~ 71186500 (-) True G79538
TU87874 lncRNA downstream 106523 71135390 ~ 71156648 (-) True G79503
TU87884 lncRNA downstream 115039 71147068 ~ 71148132 (-) True G79513
TU88083 lncRNA upstream 182795 71449654 ~ 71450022 (-) True G79688
TU88095 lncRNA upstream 202576 71469435 ~ 71470755 (-) False G79700
TU88178 lncRNA upstream 352623 71619482 ~ 71619944 (-) True G79780
TU88179 lncRNA upstream 354834 71621693 ~ 71622526 (-) True G79781
TU88270 lncRNA upstream 446866 71713725 ~ 71713933 (-) True G79871
LOC110532621 mRNA downstream 149893 71110850 ~ 71113278 (-) True LOC110532621
XM_021610726.2 mRNA downstream 239298 71020483 ~ 71023873 (-) True soul2
XM_021610716.2 mRNA downstream 301192 70863113 ~ 70961979 (-) True slc24a3
XM_036984496.1 mRNA downstream 405403 70851922 ~ 70857768 (-) True si:dkey-187a12.4
XM_021610706.2 mRNA downstream 405428 70851922 ~ 70857743 (-) False si:dkey-187a12.4
XM_036989840.1 mRNA upstream 409172 71676031 ~ 71683123 (-) True LOC110532628
XR_005053622.1 mRNA upstream 542080 71808939 ~ 71808991 (-) True LOC118966745
XM_036984529.1 mRNA upstream 557534 71824393 ~ 71872192 (-) True bcl11aa
XM_036984535.1 mRNA upstream 629365 71896224 ~ 71961729 (-) False LOC110528651
XM_036984542.1 mRNA upstream 629365 71896224 ~ 71961729 (-) False LOC110528651
TU86690 other downstream 907580 70354916 ~ 70355591 (-) True G78414
TU86511 other downstream 1174457 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 1175514 70085938 ~ 70087657 (-) False LOC118965321
TU86508 other downstream 1177786 70082840 ~ 70085385 (-) False LOC118965321
TU88004 other upstream 55091 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 62165 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 109426 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 109426 71376285 ~ 71386523 (-) False G79616
TU88005 other upstream 109426 71376285 ~ 71386523 (-) False G79616

Expression Profile