RNA id: XM_036984562.1


Basic Information

Item Value
RNA id XM_036984562.1
length 6407
RNA type mRNA
GC content 0.54
exon number 29
gene id LOC110528651
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71896224 ~ 71961729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaaaagagcgagagagaggaagagagagagaaagagaaaaggcgaCTAGGAACCGAAGAAGCACTCCCACCGTGGGTGCCTGCCACCATGGGAGCCTTGCATCACTTGCCCGAGCCGTTGCTTCGTCCATGGGCCATGTCGTGATCCGTGGGCACCGCCAGCGGGATTTCTGTCAGTGATCCTAGCCgccaaagagagggggagaagatgtCCGCCTCGGTGGGCCCTCCGGGCGGCGCGCGTCCACCCGTCGTGCCGGCGTCCATGCCCGAACCGGACCTGAGCcatctgacagaggaggagaggaagatcaTAATGGCCGTGCTAGCTcgacagaaggaggaggaggagaaggaagaggccATGTTAAAGGAGGAGAAGCCCATCCAAGCAAGAACTGTGAACCTGGTTGGGCAGAAGAAGCCTCCTCAGCAAAACGATGTCCGAGGTATCCAGCAGCAGATGTGGAGCTACAGGGAGACGGTGCGGCGGGTGGGGGAGGAGACGCGCCGGCAGACCACCACGGGCCAGCACCGGGACGACGCTCCCACCTGTGGCATCTGCCACAAGACCAAGTTTGCTGACGGCTGTGGCAGCCTCTGCTCTTACTGCCAGACCAAGTTCTGTGCCCGCTGCGGAGGGAGGGTGTCCTTGCGCACCAACAGTGAGGACAAAGTGGTGATGTGGGTGTGTAATAACTGCCGTAAGCAGCAGGAGATCCTCACTAAGCCAGGGGAGTGGTTCTCAGGTCCAGGGAAGCCAGGTCTAGGCTCAGGCATCAGTGACCCGGCCATGTGTGGCCTGAACCCCGGTGACAAGAAGCTCCGTTCCCACTTCCAAGTCCCCCTGGGGCCCCTCGACCCCAATCACCCCGGTGACCCAGGACTGGCACCCGGAATGGACCCCCGCTCACGTAGCGAGCCGCCGAGAAAGCCGGGCGATCAGAACATTAAAGGTCGAGGTGAGCGTCGGCCGGGTCACCCCAGACTCCATACCCAGGTGTCAGTGGACCGGGACCAGTGGGAGCGGGAGCGGAGGGAGGGCCGGCGGCTGAGTAAGGGCCGCTCTCTGGAACATGACCCTGTGGGAGTGGGGGTCCCCCGATGGACAGAGAAGGGCTACCACATAGACCCCAACGCCCCCCGACATTTAGCCCAGCCCCAGCCAGGGGAGCCACTGGGGGGCAGGCACCCTCTACAGCCCCAGGGGCGAGGCAGGGGGGTTGGGATGGGGATTGGGTTTGAGAGTGTTGGGGGCATTGGGGGCCAGCCCGAGGCTATGCTGGGCCAGAGGACGGTGGTCGGGGGCACTAGGGGGCCACAGGGCCTCGGCCCTCCACAGCTCCAGCCCCCAGAACTCAGGGAGCCCCCTGGGACAGCCCCAGGCCCCGGTCAGGATCCCCTCCTGCGCCGGTCCAAACGGGACAAGGCTGAGAGCATGCTGCGCAATGATTCGCTCAGCTCGGACCAATCAGAGTCTCTGCGGCCGCCCCCGCCACGGCCGTACAAGTCAAAACGTGGCGGTGCCACGAAGAGACAGACATCTGTCAGCAGctcagaggaagagggagggaccACGCCGGAGTATAGCAGCTGTGAGGACGCCGAGATTGAGAGTGTCagcgagagaggtgggagaggtaagaggagagGGGACTGGGAGTGCTACCCGCTGGACCCCACTGTGTGGCATCATCCGGTGACATGGCAGCCGTCCAAAGAGGGTGACCATCTAATTGGCCGAATCACCCTGAGCAAGAGGAGTGCTATGCCCAAAGAGGCCGGAGCACCGTTGGGGCTGAAGGTGGTTGGGGGAAGGGTCACAGAGGCGGGCAGACTGGGAGCCTTCATCACTGTAGTCAAGAAGGGCAGTCTGGCCGACATCGTGGGACACCTTCGAGCAGGGGATGAGGTTCTGCAGTGGAACGGCAAGATGTTGCCAGGAGCAACACAGAAAGAAGTTTATAATATCATTCTCAATTCTCAAGCAGAACCTCAAGTGGAACTAGTGGTGTCCCGGCCCATTGGTGATATCCCAAGAATCCCAGACACGTCCCACCCTCCATTAGAATCTACCCTCACAGCAGGTTCCAGTTCATTTGAGTCCCAGAAGATGGAGCGGCCATCTATATCGGTCATGTCCCCCACCAGTCCCAGTACACTTAGAGACCACCCACAGCTAATGCCTGGACAGCTTGCAgtaCTGCCCGGACAACTTTTAGTCAAGCTGTGGTATGATAAGGTGGGACACCAGCTGATTGTGAACGTGGTACAGGCTACAGAGCTGCCTCCCCGCCCGGATGGGCGTCCCAGAAACCCCTACGTCAAAATGTACTTCCTGCCAGACCGAAGcgaTAAGAGCAAGCGGAGGACTAAGACAGTGAAGAAGAGTGGAGAGCCAAAGTGGAACCAGACGTTTGTGTACTCCCACATCCACCGCAGAGACTTTCGCCAACACATGCTAGAGCTGACCATGTGGGACCAGCCTCGCTTACCTGACGAGAATAGCATGTTCATgggagagATCCTAATAGAGCTGGAGACAGCCCCGTTGGATGACAAGCCTCACTGGTACAAGCTGCAGACCCACGACGTGTCGTCTATCCCCCTGCCCTGGCCATCCCCTTACATGCCCcgcagaaacacagacacacccagCAAGAAGCTGCAGCGTTCTCAGCGTGTTAAAGAGCCTGAGTACGATGACACTGGACCTATGTCTAAAGctgCCGAGAGGGGTTCgcgggagagggggaggcagcaGAAGGATCCCCACGCCACCACTCTGGAGGTGCCGGAGCAGAAGAGGACACCCCAGCATCGCTCTCGATCTGTCTCTCCTCACAGAGAGGAACAGGGCAGGGGGCGATCACGACCCGCCAATGTACCCACccagagGAGTTTGGATGATGAGATCCACCATAGTAGGAGGTCTCGTTCTCCCACCCGCTACTACGACTCTACCAGAGGACACTACCAGGAGCAGGACTATGTagatgacagGCAAACTCGGAGCCTGGACTCATCCACCTGTCACACTCTGGGCAAGAAGCTCCCTGACAACGACAGggGCCACCTCCAAGGTGGTGCGTCTCTGTCCTCCTCAGTGATGTCCTCGTCAGCAGCTCGCAGGGTCAGACAACTCCCACAGGTCCCAGACAAGAGCAGCAGCCCCGTAGAGCAAGcCCTAGCAGCAGAGGAGCGTGTTCGTCAGCTCCAGATGAAGGTGCAGCAGAGGGACTCCTATAGGAGTTCTGCTGCTCCGTCCACTTCTAGCAGGGACGTGGAGAGGGTGCTCAAGAGCAAACGCGAGGTCAGTCACCTGTCACTTGAGCTGTATAAGGACCAGAGGAGAACCAGCTGTGAGAACGTATCCCGCAAGTCTTCAGACAGTGATGTCAGCGACGTGTCAGCCATCTCTCGCACCAGCAGTGCCTCCCGCATCAGTAGTACCAGCTACATATCCATCCAGTCAGAGAGACCCCGGGGACGCTTCAAcaaggCGATGCGTGCGTCAGGCCGCAGCATGTTGAAGAGCACCAGTGTGAGTGGTGAGATCTATGGCATTGAGCACACGGACGGCAGCCAATCAGATACAGCATTGGGCGGGGGCAAGAAGCGACGCTCCAGCCTCAGCCAACGGGTGGTGGCCATTGTAGGCCTGCCCTCCAGACGCAGCTGCAGCACCTCACAGCTGACCTCCCAGAAAGCAGTGGTGGTGGATACTAAGAAGAAGGGCAAAAAAAAGAACAAAATTCAGATCCAGCGGAGTACAGAGGTGGGCATGGCTGTAGAGTACCCCCGCTCTGCCATGAACCGCCAGGCCAGCAGAGACTCCACTGACGGGAGCATGAACAGCTACAGCTCTGAGGGGAATCTAATCTTCTCGGGGATGAGGCTGGGGGTTGACAGTCAGTTCAGTGACTTCCTGGATGGCCTTGGCCCCGCCCAACTGGTGGGCCGGCAAACATTAGCCACACCCGCAATGGGAGATGTTCAGATCGGAATGATGGACAAAAAAGGCCAGCTAGAGGTGGAGGTGATTAGAGCACGTGGCCTTACACCCAAACCAGGGTCCAAATCACTCccagCACCCTATGTCAAGGCCTACCTGCTGGATAACGGAGCCTGTAAAGCCAAAAAGAAAACCAAGATTGCACGTAAAACCCTGGAGCCACTCTACCAGCAGGCCCTGCTGTTTGAGGAAAGCCCACAGGGGAAAGTCCTCCAGGTAATAGTCTGGGGCGACTACGGGCGACTGGATCACAAATGCTTCATGGGAGTTGCACAGATCCTATTGGAGGAGCTGGACCTCTCCAGCACAGTGATTGGCTGGTACAAATTGTTTCCTCCTTCCTCATTGGTGGACCCTACCTTAGCCTCGCTTACGCGGCGGGCATCCCAGACATCCCTGGACAGCTCAGGACCAGCTGGTATGCGCTCTTAGTGACCACAACGCAACCACAACCCCAAATGGACAACAACCAATGGACCACAACTGACCAGAGTGCATGACCACATCCCTAGGGCCAAGATAAACCTTAAGCAAATCAAAGCCAGACAGATAGAgatatacagagaaagagagggagagcgagaactAGCCAATCAAAGTTTAGCTGAAGTCAGACAATCATTTCCCATGCCTCCCTCCTTctgtcttctctcctttctctgggCTGCTAGGCCTTGCTCCTGAGTCTCACCTCTTCTATTTCTCATCCCTCCTTTTTATGtatccatcctcctcctctctgacatCTCCTGTTTTGTCCCCTctttctccattcctcctctccctccgttGAGTGTGTTATGGCTTGTGCTCCTGAGATTGAAGGGACTCATGCAGCCCACTCTGTTAGGGGGCACAAGGGATGTCAGCTCAGGCTTGGTGTAGCCAATCAGTGAATAGGTTATTGTGAGGCCATAAAGAGTGTGCAGGAGACAAAGGGAAAATGTTGAAGATACCCTGCCGACAGCTGCCCATCAAAATGCGTTTCAGCATTGAGGTCGTCATGGCATTGCTATATCTGTGAGGATTGGCGTGATTGCGCAACCTGTTAGGGGAGGGAGACTGCACAGGTGAAGACAATACTTGTTCTAAGATCAAAGCAAGCACAAAAGCTTGATTCTTTTTCAGACAACAAATGGTTgcgaaagagaaaaaaaagggcCAAATTATGGTTAGATCTATTTTATTCCATATTCTATTTGCCTAGAGTTGAGAATGTGGTGCAGACTCCCTGTGTGCATATTTGGTTTCGAGTGACGGTGGTCTGCAGACCAGCAGAGGTCTCGTCACCCCCGGCGAGTGTGGCGGGCGCAGCATGACTCGGGACCCCGGCCCAAGCTGCATGCACATTTTTTTGTAAAACGAAAGCCAGACGAATAACTTAAAAAGAGACTAGACTAAATGTGTGTTAGTTCCACATACTTTAGGCCAGCTTGTATGTTGCATGTACTTGTACAGTTTGCTCGTACTGAATATGAATACAAACAGAAAAGCCATCCGCCATCCAAGGGCGGACACCGGGGGAATAAGCTCCGCCCAGGCCACACCTCCCACTCTGCGTATGAATATCCATATTAGGAAGTCTccaaaatacttttttattttcttgTGTTCCTTTTGAACCCtttggagaacagtgctgtatcGTAGTACTGAGCGAACTGACTATCTGAGGAGCTAAGTGTTTTAACTATAGTCTTTGGCAGTGGGGCTAGGTAGAGAATGTGTGTATAAAAACAGAGATTAATGTATATGAAGTATAATTATGACATAAATGATaaaagatatagatatatatgatTATCAAATGAGTGTATCTGACTATACAACTATcacctataaacacacacacacacgttgtaaATATGAGTCAGGGGGACGATATTTACACACACAAAACGATCCAAACATTCCTAGTCCTATGGAAACAGATCTGAGCCCCTTGCCCTGTGCTTTGAGAGCCGCTGAGCGGTGCCCAACCACAAGGGGGAGCCAGCAGACCTTTCAGTTTCTCCTCATAGCAGCCAAAACCAACATGACTATTTGCAACACATGCCACCTTGTTTCTTTAACCGCAAAACTTTAATCCCCGTATTTTATCATGGTTTGGACTGAATTTAAAAACCCACAAAGGTTTTGTTAGCTGACGTTTTAGTTGAACCTCTTGCGGTGCGGCCCACTGCCCTTTCCTTTGTCGGTATTACTCCACGATACTGATTGTTTACAGTCCATGAGTTTCCACTCAAAACACCATATCTAGGAAAGAAGTATTCACTTCAACATTTCTTGTTTGTATAACAGATGTGGCTCTACTGATGTGTATGTTTTATATTCAAGAGTTCATTTTTATTATTTACAAATAAAAGACTGTGGAAGAAAATGGTGGGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88567 lncRNA downstream 54655 71841320 ~ 71841569 (-) True G80148
TU88565 lncRNA downstream 58451 71837529 ~ 71837773 (-) True G80146
TU88564 lncRNA downstream 59900 71836098 ~ 71836324 (-) True G80145
TU88374 lncRNA downstream 96804 71799221 ~ 71799420 (-) True G79973
TU88369 lncRNA downstream 100915 71795109 ~ 71795309 (-) True G79968
TU89401 lncRNA upstream 162948 72124677 ~ 72124890 (-) True G80915
TU89420 lncRNA upstream 189058 72150787 ~ 72152893 (-) True G80934
TU89457 lncRNA upstream 241107 72202836 ~ 72204454 (-) False LOC110528794
TU89468 lncRNA upstream 242778 72204507 ~ 72264780 (-) True G80975
TU89591 lncRNA upstream 466266 72427995 ~ 72428306 (-) True G81095
XM_036984529.1 mRNA downstream 24032 71824393 ~ 71872192 (-) True bcl11aa
XR_005053622.1 mRNA downstream 87233 71808939 ~ 71808991 (-) True LOC118966745
XM_036989840.1 mRNA downstream 213101 71676031 ~ 71683123 (-) True LOC110532628
XM_036984523.1 mRNA downstream 613436 71264963 ~ 71282788 (-) False fancl
XM_021610766.2 mRNA downstream 615791 71264963 ~ 71280433 (-) False fancl
XM_021610825.2 mRNA upstream 33081 71994810 ~ 72001251 (-) False LOC110528682
XM_021610818.2 mRNA upstream 33081 71994810 ~ 72001260 (-) True LOC110528682
XM_036984688.1 mRNA upstream 80184 72041913 ~ 72104012 (-) False smap1
XM_036984694.1 mRNA upstream 80184 72041913 ~ 72104014 (-) False smap1
XM_036984701.1 mRNA upstream 80184 72041913 ~ 72104014 (-) False smap1
TU88304 other downstream 152415 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 425765 71469682 ~ 71470459 (-) True G79700
TU88001 other downstream 509701 71376285 ~ 71386523 (-) False G79616
TU89450 other upstream 246200 72207929 ~ 72211089 (-) True G80957
TU89447 other upstream 286875 72248604 ~ 72251918 (-) True LOC110528794
TU92060 other upstream 2610718 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 3010483 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 3566614 75528343 ~ 75528903 (-) True G84713

Expression Profile