RNA id: XM_036984626.1


Basic Information

Item Value
RNA id XM_036984626.1
length 3331
RNA type mRNA
GC content 0.50
exon number 12
gene id smap1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72041913 ~ 72104027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATGAATACAAACAATTTGCCTTTCGGTCTTCATTTAAAGTTCGGCACAAGGTTAGCAATGTGTTGAAGGCTAGGGTTAATGTTATGTTTCAAATCAGTGTTTAAGaatataaattgtagaaataggcgtgGTTTATACCTTTATGGCTGGGGTAAGTAGTGACGACTCAGTGGTACTGCTAGCGGAACACTAGCTCCCATATTGAGCTTGGCTGTGAGCAGTACGGTTGTAGTAAGCTGCACATACCCAGGGATGGTCTTCCTTTAATGCATGTAAATTAGACACAGATGGTAAGGGTACAGTAGGTGTTTTTATTTAGGAACAGTGCAGCATAACTTGTTGAGAGATGTCGACGCggtcggagagagagaaagcccagAAACTGAATGAGCAGCATCAGGCCATTCTGTCCAAAATGCTCCGAGAGGACGACAACAAGCACTGCGCTGACTGCGAGGCTAAAGGTCCGCGATGGGCGTCGTGGAACCTGGGGGTCTTCATGTGTATCCGCTGTGCTGGCATCCACAGGAACCTGGGCGTCCACATCTCCAGAGTCAAATCTGTCAACCTGGACCAATGGACCCAAGAACAAATCCAGagtatggTAGACATGGGGAACAACAAGGCCAAACAGCTGTACGAAGCCCACCTCCCAGACACCTTCAGACGTCCACAGACCGACCAAGCAGTAGAGTTCTTCATCCGGGATAAGTACGAAAGGAAGAAATACTACGACCAGAATGGCCTCAAAACAGCTTCAAAGTCTTCTGATGCCGCtgccttctctacctctcccgCCTCACAGGCTGCTGAGAAGAACAGACAGGAGAAGGAacgagagaagaagaagagagaaaaggaCCCGGAGAAAGTGAACAGACCAAGCTCCTCTGAGAAGGGAGAGAGGGGCACAGCACATCTAGACGGGGATTGGCTCTGGGAGGGAGATGAGattcaacacacacagagagagagagcgagagacggacgTCACACATGTCACACCATGTGCCATCTCCGGTCGATGGGAAAGAAGGCGGAGCTTCAGACAGACTCCAGAGCCAATCCCAGGAGGACCCCCGAGCCGGCCATCGACCTGCTCGGCCTGGATGCACCTGCAGGTGGAGCTGCAACCAGTTCTGCTGCACCAGTCAGTGATGAGGACATCTTTGGTCCAATGGTGTCCAACCCTCTGCCCTCTTCCAACAACACTCAGGCAGTCTCCAGTGCAGCCCCAGGCGCCCCAGCAGTAGCGGCGTCCGCGGGGGGATCGGGGTGTGCTGCTGGCCCCCAGGCTAATCTGGACCTCTTCAGTGAGAAGAACAGTAGCAGCACCAAGACAGAGGAGGGGGCCAAGAAACCCCTCTCCAAGgactccatcctctccctctacagCAACACCACAGTCAGCCCACAGCCTGCTGCCCCAGCTGCTGCTATGTATATGGGCCAGCCTCCGATGCAGCAGTTCCCCAGCCAGCCCTCCGGACAGCCTAACTTCCAGACTTACCCAGGAGTGGGCGGAGCTATGCCACCCACAACCATGACGGGCGGTGTTATGCCCCAGGGAGGAGGAGCCATGATGGGGCAGAACTCTGGCATGATGGTCGGTATGGCGATGCCCAACGGCGGTTACATGGGTATGCAGCAAGGCATGATGGGGCCTCCGGGCGGCGCTATGCCAGCGGGGGCGGGGACTCCCCAGATGTACGCCGCcatgcagcagcagcaacaacagcagggCCAGTGGAATGTGAACcagATGACCCAGCAGATATCGGGCATCGCCATGAGTGGTGGTGTGGCAGCGCCACCCGGCTTTGTTCAACCAGGTGCTCCCATGGGTGGGGGGGTGGGTCCTCCCTCGGGCCAGACCCTCAGTACCCAGCTGTGGaagtgagggaggggaggggggagagtgggagagggaggcagaacaACCATGTCACCCcaaatctcctcctctaccctcactCACCAACTGCAAAACAGGAAACGACGCACATGGGGCAATCTATGGACTGCTCCactgttctccctcctccccgTTTATGATTCCTTTAgagacccctctctccctctgtgtgctgCGGGGGTGGAGTCTGGGGTGAAAACAGACTGGCAGCTGTGTGTTCATTTCTTTACTTGGGACTTTTACTTTCTTATTCTTTTGACTTTTTttcttttgtttaaaaaaaaaaacatattggcGAAAGAGAAAAGCTGCTGGACCAATAATACAAgcgtctaataataataataatatatcatTACCAGAACCGATAGTGAGTAAATAGATATTTAAATGGAGAGATATGGATAACATGTTGGTGACCCATCAATATcatgtgtgtatattatattgtactCCCCTCTGGGCATTCAGAGCTCCTGTAGCAAGACATTGTATGATccagtactgtattactgtatgtgtgtgagatatagacccccccccccagtgaggTTGTGTTCTACCATCTTACTGTGGTGTTTTGTTGTGTGCAGAACAAGAAGATGCACAGTTCTGTCTGATTGACACTACAAagccaagctgtactgggcttggcctggttacgcatccaccatagttgctggaaatgacagtgaaaagactATATCTGAGCCAGCACAGTATGGTTCGTGGTGGCCATTTAGTGTGAATAGGGCATTAGTTTGAGGCAAATAAACCTGGACGACAGTCGGTGGGGCTGGGAGCTTACGTGGAGGGGGAGGGGACCAGAATACGAGAGGAAAGAGATGATGCCAGTGATGACATAACGCTCCAGATGATTCAGGAAGTGTGTTGACATTGGGAGCCTAATGGAGCTGTCAGGGATTGGAACAGTTGGCTTAACATCACGTTTGCTTACTTCCCGGCCTCTATGATGACATAATCTCTGTCTAATCCTGCTTTATGTCAATTTATAGATTATATAGTGGGGAAAGAAGGTGAAGAAATACTGCAGGGGGAAATAGGTGGTGCACTAGGAATCAACAAACAATAGATCAAACACAGACATTCTGTGTGTAGTTCTAAGTTGGAGATGCTATCCACATACAGGGTCCCTGCCATGTAATAACAAGAGAACACACACTCAAGAGAATTCATACACACAGCTTGTCCTCCAGGTTTATTTCTAGTGGTGTTTACATTTTCTGGTGCCTAGTACAGAGAGAAATGTTATTTCCGTGCATTAAACAGTGAATAGCCATGAACTATTGTGACCATTTTTGTCCAATGACTCTTTTATTGTAAAgttgttttttcttttctttttcctGCTTTTACAAGAGGGTCATTTGGAATAAAAGTTGTACTCCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88634 lncRNA downstream 80595 71927506 ~ 71961318 (-) True G80190
TU88567 lncRNA downstream 200344 71841320 ~ 71841569 (-) True G80148
TU88565 lncRNA downstream 204140 71837529 ~ 71837773 (-) True G80146
TU88564 lncRNA downstream 205589 71836098 ~ 71836324 (-) True G80145
TU88374 lncRNA downstream 242493 71799221 ~ 71799420 (-) True G79973
TU89401 lncRNA upstream 20653 72124677 ~ 72124890 (-) True G80915
TU89420 lncRNA upstream 46763 72150787 ~ 72152893 (-) True G80934
TU89457 lncRNA upstream 98812 72202836 ~ 72204454 (-) False LOC110528794
TU89468 lncRNA upstream 100483 72204507 ~ 72264780 (-) True G80975
TU89591 lncRNA upstream 323971 72427995 ~ 72428306 (-) True G81095
XM_021610818.2 mRNA downstream 40653 71994810 ~ 72001260 (-) True LOC110528682
XM_021610825.2 mRNA downstream 40662 71994810 ~ 72001251 (-) False LOC110528682
XM_036984567.1 mRNA downstream 80184 71896224 ~ 71961729 (-) False LOC110528651
XM_021610957.2 mRNA upstream 72391 72176415 ~ 72193773 (-) False LOC110528822
XM_021610964.2 mRNA upstream 72391 72176415 ~ 72193773 (-) False LOC110528822
XM_021610973.2 mRNA upstream 72391 72176415 ~ 72193773 (-) True LOC110528822
XM_036984777.1 mRNA upstream 98790 72202814 ~ 72251916 (-) False LOC110528794
XM_036984785.1 mRNA upstream 98790 72202814 ~ 72251916 (-) False LOC110528794
TU88304 other downstream 298104 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 571454 71469682 ~ 71470459 (-) True G79700
TU88001 other downstream 655390 71376285 ~ 71386523 (-) False G79616
TU89450 other upstream 103905 72207929 ~ 72211089 (-) True G80957
TU89447 other upstream 144580 72248604 ~ 72251918 (-) True LOC110528794
TU92060 other upstream 2468423 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 2868188 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 3424319 75528343 ~ 75528903 (-) True G84713

Expression Profile