RNA id: XM_036984798.1


Basic Information

Item Value
RNA id XM_036984798.1
length 1490
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110528794
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72202814 ~ 72251918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATTGCTGACACACCAGTACTCCCACACAAACATAAATACTACCAGAGACGTTCTCTCTCATCCATTCATGGCTCCACATCTCCTCCTTGTCCTGCGCATCCTGTTCTTCCTCACTGGAGTCTCAGatacacagAGTGTGTCCACAGTGAGTCATGTGTCTGTAAAGCAAGGAGGCTCCATCACCATCCCATGTCTCTATAATCAGAGATATAGAAACAATGTGAAATACGGGTGTAGGGGATATAATTGGTTTGGTTGCTCTACTGTAGTACGCACTGACCATCCTAAGACCAGTGGAAAGACCTCAGTCTCTGATGACATCAACCAGCGAGTCTTCACTGTGACCATGACAAGTCTTAGTCTTAGTGATTCTGATTATTACTGGTGTATTGTGGAGAGGAAGAGCAAGGCAGATGATGGGGATAGACTGCAGATATCTGTTACTCCAGGTACTCCAGAACTCTATGTGGACCAACAACAGATGACTGGAGTTGTAGGAGGGAGTGTCACTGTGCTCTGTTACTATAGTTCACAAGGAAGCAGTGGGAAGTGGTGCAAGATGGGAGGCCCTTGTGTGGTTGTGGGACTTTCTGGAGCTTTAGATGGAACATTTGTGAAGTTAGTGCAGGAGCATAGAGAAACCACCAACGGTTATGTCTTAATGGTGACTATGAGTGGATTGATGATGAAGAACACTGGCTGGTACTGGTGCGAAAAGGGAAAACTACAGATGCCTGTTCATATCactgtcaatcaatcaaccaCAACACAGAGCACCACAACAACACAAGCTCCATCCACTCACCAAGCGTCACTAACCAGTGCTGAGTCTAACACTTCTCCGCCCACAGTTTCCCCTTCTGTTACAAACAGGGACAATGTTGTAACTAACGAGAACACAGATGAGAAGCCCCAGAGTTTGCTGGAAGTCCTGTTCATTCCTCTGAGCCTGTTGGTGGTGTTGATAGCTGTTACCTTGGTCACATTGAAGATGTTGAGAAAACATAAGGACAAGAAGGCAAAGGACCAACCAGCAAACACCTCAGTACCTGCTGACCCTGAGAAGGACATTACCTACAGTACTGACCTAAACCCTGAGAGACATGGTGACTTGTACAGCACTGTGATTCCTATGCAGCACAGGACAGCACAAAGGGCAGCAGAACCAGATGATGTGGTCTACAGCACAGTGGCCCAACACCAGAGATACAGTAGGTCGCAAAGAACCAGACGAGATGTTGGGGGAAATACTGGATGATCTCAGTGAACTAGGGCATCAGAACAAAAGTCTCCAGATTGAGTAACATATAAAGTTGTTTTATTTGTCACCTGCCCCAACCCTTTGTCCTCATTACTTTATTGTTCTCTCTTGTTAATCTGCATATTTTATAGACTGAACGTCTTGTACTTGTAATAAACTGTGCCCATGTTGACATTTAACTGTACATGTGTTTTTCAATAAAGGAtatcaaataaatatatttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89420 lncRNA downstream 49921 72150787 ~ 72152893 (-) True G80934
TU89401 lncRNA downstream 77924 72124677 ~ 72124890 (-) True G80915
TU88634 lncRNA downstream 241496 71927506 ~ 71961318 (-) True G80190
TU88567 lncRNA downstream 361245 71841320 ~ 71841569 (-) True G80148
TU88565 lncRNA downstream 365041 71837529 ~ 71837773 (-) True G80146
TU89591 lncRNA upstream 176079 72427995 ~ 72428306 (-) True G81095
TU89615 lncRNA upstream 201492 72453408 ~ 72458642 (-) True G81119
TU89627 lncRNA upstream 216928 72468844 ~ 72516167 (-) True G81127
TU89619 lncRNA upstream 231878 72483794 ~ 72508066 (-) True G81120
TU89649 lncRNA upstream 240811 72492727 ~ 72532701 (-) True G81145
XM_021610957.2 mRNA downstream 9041 72176415 ~ 72193773 (-) False LOC110528822
XM_021610964.2 mRNA downstream 9041 72176415 ~ 72193773 (-) False LOC110528822
XM_021610973.2 mRNA downstream 9041 72176415 ~ 72193773 (-) True LOC110528822
XM_036984638.1 mRNA downstream 98787 72041913 ~ 72104027 (-) True smap1
XM_036984629.1 mRNA downstream 98790 72041913 ~ 72104024 (-) False smap1
XM_036984746.1 mRNA upstream 8168 72260084 ~ 72269534 (-) False LOC110528758
XM_036984751.1 mRNA upstream 8168 72260084 ~ 72269534 (-) False LOC110528758
XM_036984759.1 mRNA upstream 8168 72260084 ~ 72269534 (-) False LOC110528758
XM_036984763.1 mRNA upstream 8168 72260084 ~ 72269534 (-) False LOC110528758
XM_036984767.1 mRNA upstream 8168 72260084 ~ 72269534 (-) False LOC110528758
TU88304 other downstream 459005 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 732355 71469682 ~ 71470459 (-) True G79700
TU88001 other downstream 816291 71376285 ~ 71386523 (-) False G79616
TU92060 other upstream 2320531 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 2720296 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 3276427 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 4081552 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 4115377 76367293 ~ 76399956 (-) True ccser2a

Expression Profile