RNA id: XM_036984763.1


Basic Information

Item Value
RNA id XM_036984763.1
length 2127
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110528758
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72260084 ~ 72269534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTGATTGCGGACACACCAGTACTCCCACACAAACATAAATACTACCAGAGACGTTCTCTCTCATCCATTCATGGCTCCACATCTCCTCCTTGTCCTGCGCATCCTGTTCTTCCTCACTGGAGTCTCAGATACACAGAGTGTGTCCACAGTGAGTCATGTGTCTGTAAAGCAAGGAGGGTCCATCATCATCCCATGTCTCTATAATCAGAAATATAGAAACAATGTGAAATACGGGTGTAGGGGATATAATTGGTTAGGTTGCTCTACTGTAGTACGCACTGACCATCCTAAGACCAGTGGAAAGACCTCAGTCTCTGATGACATCAACCAGCTAGTCTTCACTGTGACCATGACAAGTCTTAGTCCTAGTGATTCTGATTATTACTGGTGTATTGTGGAGAGGAAGAGCAAGGCAGATGATGGGGATAGACTGCAGATATCTGTTACTCCAGGTACTCCAGAACTCTACGTGGACCAACAACAGATGACTGGAGTTGTAGGAGGCAGTGTCACTGTGCTCTGTTACTATAGTTCACAAGGAAGCCGTGGGAAGTGGTGCAAGATGGGAGGCCCTTGTGTGGCTGTGGGACTTTCTGGGGATTTAGATGGAACATTTGTGAAGTTAGTGCAGGAGCAGAGAGAAATCACCAAAGGATATGTCTTAATGGTGACTATGAGTGGATTGATGATGGAGAACACTGGCTGGTACTGGTGCGAAAAGGGAAAACTACAGATGCCTGTTCATATCACTGTCAATCAACCAACCACAACACAGAGCACCACCACAACAACACAAGCTCCATCCACTCACCAAGCGTCACTAACCAGTGCTGAGTCTAACGCTTCTCCGCCCACAGTTTCCCCTTCTGTTACAAACAGGGACAATGTTGTAACTAACGAGAACACAGATGAGAAGCCCCAGAGTTTGCTGGAAGTCCTGTTCATTCCTCTGAGCCTGTTGGTGGTGTTGATAGCTGTTACCTTGGTCACATTGAAGATGTTGAGAAAACATaAGGACAAGAAAGCAAAGGACCAACCACCAAACACCACAGTACAGTCTTCTGACTCTGAGCAGAACATTACCTACAGTACTGTGAGTCACATCAGAGGATCAACACAACagGTCCTGAACCCTGAGAGCCACGGTGACTTGTACAGCACTGTGATCCCTAAGCAGCACAGGACAGCAAAAAAGGACCCATTACCTGATGATGCAGTGACATACAGCACCGTGGTCACCAAGAACAAGATTCCATTACCTGATGATGCAGTGACATACAGCACTGTGGTCCCCAAGAACAAGACCCAaccaaatGCAGCAGAACCAGATGATGTGGTCTACAGCACAGTGGCCCAACACCAGAGATAGGGAGTAGCAGCAGAGCAGTGACAGCATTAAATCCTTGGTCCCAAAGAACCAGACAATCTCTTTATGGGGGAAAATACTGGAGGATCTCAGTGTACTAAGGCATCAGAAGAAATGTGTCCAGATTGACAGTAAAACATATAAGGTTATTGTATTTGTCACCCCCTGCCCCAACCCTTTCTCcttattattttttattgttcACTTTTTCTTTTTAAAGGATGAATCAAAATGTATGTAAGGGGACAGCCGAATAAACCTTTTAGGTTTGAGATGGCACatctttttctaagagtgtaggctgACTGTCTTAAGTGGAAAGGTAGGCCAaacttttgaaagtaccatgctcagattcctgatttaattatttgcaaacagcGACAGTTTCGTTGCAAACAGGACAAactgatttggcattggagaaatatgaAATATTTAAGGCTCTGGTCTGTACAGGAGGTGAGGATAAATGGGAGACATGTTCAATGCAATCCACTttgtttaaattatttattttgggTAGAGGGGAGGCTCACTTGTTTTCTTTCTAGGGTTTAGGTCAAATATATTTAGCTGAAGAGCGGGCCATCCAatttcatttcagagaggtccGATTTTCTCCATTTAACTCTTATTATAATTAACGTTCACTCCCTAACCTGTATATATTATAGACTGAACGTCTTGTATTAAATTGTCACAATTATGTCCATGTGGACATTTAACTAACGTGTGTTTCTTCAATAAAAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89457 lncRNA downstream 55630 72202836 ~ 72204454 (-) False LOC110528794
TU89420 lncRNA downstream 107191 72150787 ~ 72152893 (-) True G80934
TU89401 lncRNA downstream 135194 72124677 ~ 72124890 (-) True G80915
TU88634 lncRNA downstream 298766 71927506 ~ 71961318 (-) True G80190
TU88567 lncRNA downstream 418515 71841320 ~ 71841569 (-) True G80148
TU89591 lncRNA upstream 158461 72427995 ~ 72428306 (-) True G81095
TU89615 lncRNA upstream 183874 72453408 ~ 72458642 (-) True G81119
TU89627 lncRNA upstream 199310 72468844 ~ 72516167 (-) True G81127
TU89619 lncRNA upstream 214260 72483794 ~ 72508066 (-) True G81120
TU89649 lncRNA upstream 223193 72492727 ~ 72532701 (-) True G81145
XM_036984798.1 mRNA downstream 8168 72202814 ~ 72251916 (-) False LOC110528794
XM_036984831.1 mRNA upstream 7164 72276698 ~ 72281244 (-) True LOC118965494
XM_021611017.2 mRNA upstream 60801 72330335 ~ 72355781 (-) True LOC110528856
XM_036984882.1 mRNA upstream 239424 72508958 ~ 72525718 (-) False LOC110532653
XM_036984883.1 mRNA upstream 239424 72508958 ~ 72525721 (-) True LOC110532653
XM_021616746.2 mRNA upstream 337201 72606735 ~ 72607622 (-) True LOC110532660
TU89447 other downstream 8166 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 48995 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 516275 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 789625 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 873561 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 2302913 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 2702678 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 3258809 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 4063934 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 4097759 76367293 ~ 76399956 (-) True ccser2a

Expression Profile