RNA id: XM_021611105.2


Basic Information

Item Value
RNA id XM_021611105.2
length 3539
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC110528926
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73140464 ~ 73290110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGTACCTTGCGCGACCTCCAATACGCGCTCCAGGAGAAGATTGAGGAGCTGCGGCAGCGGGACACGCTCATTGATGAGCTAGAACTGGAGCTTGACCAAAAAGATGAACTGATACAAAAACTACAGAACGAACTGGATAAATACCGGTCCGTTATCAAACCGGCCACGCAACAGGTCGTCAAACAGACCGAGCTGCACGAGCACCAACGAACTAAGAGACAGGCGATATCTGCCGAACCCACCGCATTCGACATCCATGATCTTAGCCATGTCACGCTGCCTTTCTACCCCAAAAGTCCACAGTCTAAGGACCTGATCAAGGAAGCCATATTGGACAATGACTTCATGAAGAACCTGGAGCTGTCTCAGATCCAGGAGATCGTGGACTGCATGTACCCTGTGGAGTATGGCAAAGACAGCTGTATCATCAAGGAAGGTGACGTGGGCTCACTGGTCTACGTCATGGAAGatggtagggtggaggtgacaaAGGAGAGTGTGAAGCTGTGCACCATGGGACCTGGGAAGGTGTTTGGAGAGCTGGCCATCCTCTACAACTGTACCAGGACAGCAACTGTCAAGACTCTCACCAATGTGAAGTTATGGGCCATCGACCGACAATGCTTTCAAACTATTATGATGAGGACGGGCCTGATCAAACACACCGAATACATGGAGTTTTTAAAAAGTGTTCCAACGTTCCATGAACTTCCGGAGGAGATACTAAGCAAGCTGGCTGATGTCCTTGAGGAGACACACTATGAGGATGGAGAGTACATCGTCAGACAGGGAGCCACAGGAGACACCTTCTTCATTGTCAGCAAGGGAATGGTGAATGTGACCAGGGAAGACAAGCCCAGCGGGGATCCTGTCTACCTCCGCAGCATGGGGAAAGGAGACTGGTTCGGAGAGAAGGCCCTGCATGGGGAGGACATCAGGACAGCAAACGTCATCGCTGCAGAGGCCGTTACATGTCTGGTCATCGACAGAGACTCCTTCAAGCACCTGAttggagggttggaggaggtgtcCAGTAAAGGCTGTGAGGATGCTGAGGCCAAGGCTAGGTACGAAGCAGAGAACGCTTTCTTCTCCATCCTCAATCTGGCTGACTTCAACATCATTGACACACTGGGGGTTGGTGGCTTCGGCCGCGTAGAGCTGGTCCAGCTGAAGAGTGATGAGTTGAAGACTTTTGCCATGAAGATCCTGAAGAAGCGTCACATCGTGGACACGCGGCAGCAGGAGCATATCCGCTCTGAGAAACTCATCATGCAGGAGGCCCATTCTGACTTCATTGTCAGACTGTACAGGACGTTTAAGGACAGTAAGTATCTCTACATGCTGATGGAGGCTTGTCTGGGAGGAGAGCTGTGGACCATTCTTAGAGACCGGGGTTCGTTTGAGGACTCCACCACTAGGTTCTACACAGCTTGTGTGGTGGAAGCATTTGCCTACCTGCATTCCAAAGGCATCATCTACAGAGACCTCAAACCAGAGAACCTTATACTGGACCATAGGGGCTACGCCAAGCTAGTGGACTTTGGCTTTGCCAAGAAGATAGGGTTTGGGAAGAAAACGTGGACGTTCTGTGGAACACCAGAATACGTGGCACCAGAGATCATTCTGAACAAAGGCCATGACATCTCAGCCGACTACTGGTCTCTAGGAATCCTCATGTTTGAGCTCCTCACCGGCAGCCCTCCCTTCTCTGGCCCTGATCCCATGAAGACCTATAACATCATCCTGAGGGGCATTGACATGATTGAGTTTCCAAAGAAGATTACCAAAAACGCTGCCAACTTAATAAAAAAACTATGCAGGGACAATCCTTCAGAAAGACTGGGAAACTTGAAAAATGGTGTTAAAGACATCCAAAAACACAAATGGTTCGAGGGCTTTAATGGGGAAGGTCTACGGAAGGGAACTCTGACACCCCCTATCATCCCTAATGTGACATCATCGACGGACACAAGTAACTTTGACAGCTTCCCAGAGGACAATGAAGACCCTCCCCCAGATGACAACTCTGGCTGGGACAACGATTTTTAAACgtcaccccccacccccaatacCAAATGCTCTTCTGTCATTGGCCTGGGGGCCTACTTCCTGATGTAGTTTAATTCTAAAGACTGCGATAaataggaagaggagagggggaagagaggaagaggaccaCAACCGCTGTGGGTCACCGATATGCCTTCGCTATACGTGGCTCTGGGACTAGAATTTAATGACCTTATCctcagtgttctctctctcacacagacacacacacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagagagagagagagagagagagagagagagagagagagagagagagagagtcctagaGCTACAATAATGCCTTTTCCTTTAGCAGAGAGCGCGTGTGAGACTGAGTGTGTGTACAATATATGTGAGAGTGTAAGGACACTATAAGGAACGATAAAAAAAGTTAATAATATAGGGTGGAAGATGAGTTTTCTGTTGCGGCTACAGACCTGCACTGCTCctacagacacaaacagacaggctGGGTCCATGTTTGGAAGGCTTCCCCTCTGCACCCTGTTTTCTCTCCAAGACTTCTATTACTATAGCTGGTTCCTGAGGTTTGGCTCAGCAGTACCTAGTACCTACAGTATCTGGTACCTGGACCTCCTCAATAGGGATACAGAATCTTAACACTGAGTCTGACAAGCCAAACAGGTACCAAGTGCTCATGACGAACCAGAATGTTACTGTTTGTCCTTAATATTACTTTTAGAACCACAGAGTATATGTACATATCATTTGAAGTTACATTCTCACACATGCACATAGGCTGCTACACTCATCTGCTTTACTCATGTACACTGTATGCAGCAGCTAGTTAGCTTAAAAAAAAAGCAACCTTTTTGTTCTGTGCTTCTGATGGAAAAATGATGACCTTTCAAATGTCCTGCTTACAAATGTAATCAGTCACACATATTCATCCCTCATTTCTGGAAAGCAAtttgttattatgttgttattaACAAACTTCATCAACAACCACAACGGTGAAGATCCTCGGACCATCTTTCATTTCACAGGCAATGAGCGATCAGATAATAAAGATTTATTTTGAAAGTCTACTCTATGCTCTTAGCTACACATCGACCTTACATGTTGCAAATGTCTGACATTCACATCCTATGAGTTGCTATTTCATCATGTAGTTGCTAACCAATCAATATAAATACCATCCCTTTAAATAGGTAAGTCCCATTTTCACACCACAGTAGTTTAATTTACCAGTTCTAATGGAATTTTAATGCCTTCAGTGCTGCCGTTTCTACAGTATTGTAAATACAGGTGCTGAATTCAATTTGAATGGATGAAATGTTATGAGCACTGGTTATTGTTACTGTGTATTGATATTAAAGTGCTTGATTACTTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90117 lncRNA downstream 5339 73134648 ~ 73135125 (-) True LOC110528940
TU90086 lncRNA downstream 20375 73119888 ~ 73120089 (-) True G81567
TU90084 lncRNA downstream 21361 73118849 ~ 73119103 (-) True G81565
TU90047 lncRNA downstream 45750 73094442 ~ 73094714 (-) True G81530
TU90041 lncRNA downstream 48725 73091533 ~ 73091739 (-) True G81524
TU90485 lncRNA upstream 9735 73279315 ~ 73279579 (-) True G81949
TU90529 lncRNA upstream 112027 73381607 ~ 73381822 (-) True G81993
TU90532 lncRNA upstream 130566 73400146 ~ 73400520 (-) True G81996
TU90554 lncRNA upstream 159226 73428806 ~ 73429012 (-) True G82018
TU90560 lncRNA upstream 179252 73448832 ~ 73450435 (-) True G82021
XM_021611112.2 mRNA downstream 3614 73134653 ~ 73136850 (-) False LOC110528940
XM_021611054.2 mRNA downstream 522246 72612186 ~ 72618218 (-) True plek
XM_021611063.2 mRNA downstream 522877 72612186 ~ 72617587 (-) False plek
XM_021616746.2 mRNA downstream 532842 72606735 ~ 72607622 (-) True LOC110532660
XM_036984883.1 mRNA downstream 614743 72508958 ~ 72525721 (-) True LOC110532653
XM_021611124.2 mRNA upstream 53872 73323452 ~ 73343583 (-) False LOC110528949
XM_021611119.2 mRNA upstream 53872 73323452 ~ 73373737 (-) True LOC110528949
XM_021611166.2 mRNA upstream 277518 73547098 ~ 73548953 (-) False LOC110529015
XM_021611213.2 mRNA upstream 368055 73637635 ~ 73639525 (-) True sfr1
XM_021611234.2 mRNA upstream 406078 73675658 ~ 73711293 (-) False slka
TU89447 other downstream 888546 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 929375 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 1396655 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 1670005 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 1753941 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 1302867 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 1702632 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 2258763 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 3063888 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 3097713 76367293 ~ 76399956 (-) True ccser2a

Expression Profile