RNA id: XM_021611119.2


Basic Information

Item Value
RNA id XM_021611119.2
length 4767
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110528949
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73323452 ~ 73373737 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTAGCTTCACATAGGTCAAAACCACCTACCCACGAAAACAACCCCAAACCACCCCGACTAACGTTACGTTCAACGGTATTGCATTTATATCGTCTACCCATCGGAATATAAGGGAACCTAAAACGATTTATTTTGAAATTAAGAATATTTTTCATGTAATAATGTACGCCGGATAGCTACGCCACATTCCTCTGATAGCTACAAGTCGCCAATGTGATGTTATATGCGGAAAGAGGCATACGGGAACCCCATTGAAGTAATGAGGTGAAGAAGCACAAAGCAGGCTAAGTCTGAGACTGGGTCCTCCGGGTGTCCCCATCCAATGCTCCTGAAGCGCCATGAGCCACAGCTGGGGACGATTTACTACTCCATAGACTGCCATATCTCCTGCAgcctttccctctctgtcctcggGCCCCCCTTGGCCCCTTCCCCCCTTCCCCATTGGCCGAGATGAAGAAGGTGGGGCAGTGGTCGGCGGAGGAGGTGTCCCATTGGCTGAGCGAGGAGGGGATGCAGGAGTACGGCGACTCCCTCCTGCAGGCGGACGGCCCCGTCCTGCTGCGGCTCACCCCGGATGACTTCCTGACCCCGCCCCTCTCACTGGTCTCCTCAGACAATGGGCGGCAGCTCTTGGAACGGCTGGAGACCCTACGGATCGAGCATCACATTGAGGAGCACCAAAAAAATGGCCACGCCAATGGCCATGGGAGGCTGCCCAACGGCACTGCCAAGCCCCTGCGGAAAGGTTCGCTGGGGCTTAATGGCTTCCGGAAGGAGATGGTCCAAATCCCCATCCCCATGTTGGAGACTGAACGCTCTGGGTTCCCCCAGGAGTGGGGCAAGACAGGTGTAGCGTTCCTCTACGCAGTTTGCTGCTTTGTGACTACCACTGTGGTCATCTCGGTGGTCCATGAGAGGGTGCCGGCCAAGGAGCATACCCCACCGCTGCCCGATAAGTTCTTTGACATTTTTGACCGGGTGGAGTGGGCCTTCTCTATCTGTGAGATCAATGGCATGCTGCTGGTGAGTCTGTGGCTGCTGCAGTGGACCCTGCTCAAGTACAGATCAATAATCATCCGTCGGTTCTTCTTCATTGTGGGTACCCTCTACCTGTACAGATGTGTCACCATGTACAtaaccactctgcctgttccAGGGATGCACTTCCAATGCTCTCCAAAGCTATTTGGGAACTGGGAGGTTCAGATGAGGAGGATCATAAAGCTGATCGCCGGCGGAGGCCTGTCAATCACCGGCTCCCACACCATGTGTGGAGACTACCTGTACAGCGGCCACACAGTCATTCTAACACTATCATATCTCTTTATCAAAGAGTATTCCCCTAAGAGGTTTTGGTGGTACCATTGGTTCTGCTGGACTCTGAGTGCAGTAGGCATCTTCTGCATCCTGCTGGCCCATGACCACTATACTGTGGACGTGGTGGTGGCTTATTTCATCACAACACGTCTCTTCTGGTGGTACCACACCATGGCCAACCAGCAGGCGCTGAAAGAGACGTCCCAGAGTAACCCATTCTCCAGAGTCTGGTGGTTTCGACTGTTCCAGTACTTTGAGGGAAACGTCAAGGGCATTGTCCCTCGAAATTATCAGCTGCCGTGTTCATGGCGATCGTCTCCGTGGAGCCATGGGGTAAAGTACAGCAAAGTGGATACCCAGTGACCCAGGTCACGTGAGGGGTGGGAGCTGAGCGAGAGACCTCCTGAAGTTGTGATCGTCTGAAGGAGATGGTGTCGTGTTGCCAAGCCAGTACTGTTCCCTTGACTTGTTGGGCTCATTTTAGAAAAATCCCAGTTCTGGCTAGCACTGTGACCATAGTCTTACTTTAGcactacaaaaaaaaatattttgggaatTTTGGTTTTTGAAAACTTAGCACACTACTTTGATCATGTATTTTTGCTTGGGACACTTTGCAATGTTTCGTTGACTACAGCAGATCTGGTTAATATTTAAATATTATATTTagattatttttgtttttttgttttgaccATGGCTGTAACAAGTAGTTTAGACTCTTTTCCTCTGCAAATAGTTTGAGAAATTCTGGTCCGATAAGGTCTACCAAGTGCAAAACATGTCACTGAAATGTTTATTTGATAACCAAAATGCCATACATTGTCTGGGGGAGTTTTagatgcaaaacatttttttcttttttaacaaattacttTTCTGTCAACTACAACGTGGCAATGGTGCAAAAAAAGTTTTTTTCTAACAATTGCAACTTTATTTTTCAAAACAAATAAtgtccccaaaaatatttttagaTTTGTACCTTTTTCAAGATTGAATGCTGAAAGCAGAAGAATCTGTGGTATTTAGAATTGTTCCAGTGCCTTCCTTAGCTTGATTGTACTATGTGTCTGTGTTCCTCTGCCTCCgcgtgtctgtctgactgcccaCAAGGTCGGCATGAAGCGGTTCCAAATGATCGTTCAAGTCCTGTTCGCATGAATGTAAGAATAATGATGCCAGCCTTATATGGTAATTAGTCTTCCCAAAACCAAAAACATTGAGATGAGTGAAATATCCTGTCAATTTATTTATGTTTTCATATATAATATTTCTTTCCATAGCCGGTGATGTTATAGCAGTTAATGAAGGACCGTTAAGTTGTTTGGTTATGTCCTCATCATTTACTGACCCTTAGCCAGTCTTGAACGTGTTCTAAAAAGCTCATTGACTTGCTAATAATCTTGTATCAAAGGTTAGTTGCTAACTTTGAAAGAATGATGGAAACCCTCTGGACCTCAAGGACTGTACTGGAGTTGTGCAGCACACCTACAAGTCTTTGTACGAGATACTGAATCCCTATTTTGTCAAACAGTGTTCTCGAAACAGACCCAGAAAATACATCTTACTGGCTGTTGTCGACTTGGCCAATAGAGCAGTGTGTTCCTGAATGCAGCCTGCCAGAATGTCTTACTGATAAATAGGGCCGGAAGGACACCAGTATCACTATTTTTTCCGTTGCAAAAATGAAAACCCGAAGCAGgctaactctttggtccttttaaAAACCTACTGTATGTTAAATATTGTTTGCTatagctcccgagtggtgcagcagtctaaggcactgcatctcagtgctagaggtgtcactacatacaccctggttcgaatccaggctgtatcacaaccggacgtgattgagagtcccatagggcggcgcacaattggcccagcgtcgtctgtgtTTGGCtgttgtaggccgtcattgtaaataatcatttgttcataactgacttgcctagttaaataaaggtaaatttaaataaatagcttgggaaatatatacatttgactgtagatggcatcataatgatgtttgtttctgaCAGTTTTCCTGAAGAATTGAATCCCGCTTCGTGCTTTGTTTCCCTGCCACGATACTGACGAGTATATACTGGTATCGTCCTGGCCCTACTGATAAAGACAAGCTTCTTGTGATTATTTATCTGTCTTATTGACATACATGTTGATCTTAATGCAGTTCAGTGGTGATATGCCATCTTTGAACTTTGTCAAATGTATAGGGCTTTtcaatgttgacttgtttaaaaaCAGAAGTTTGAGGCAAAGTGTATTGGTACTGTCCTGAACTACATTGGCTGGCAAGTTTGCAATGCCAAAAATAGTTTAGTCACAATTACCTACTAAAGAAGCTGACAAATTGTACAAAGCCAATGGGGTTATCAAGTGGGCGAGGGGGCCAAATGCACAGTACTGGGGATCTAATGTACGGACAAATCCACACAACAGACAACGTACTGATTACCATGAATGTGAAAATGGTCTCTAATGATCCTCGATACACTTGTGCATTAAAATGATTTTGTGTTACCATTCCAACAGCACAACATGTTTTCTCCTGAAGTAGAGCTGGTTCGAGTAAGAAATTACCTCAGTTCAGCTGTCTGACTGGAGAGACTGAACTGATAATAACATGGCACTTTCTGTTATGAAAATGCAGCATGGCCCAGTTTAATAGAACTGAGTGGTGAGACAGGACAGGTTAATATAATGGACCTCAATTGTATTTATTCTTTAGAAAGAGCTCTAGCCTCTAATCATTGTTGTACATTTTTACGTCATGTTTTCTTTTGTGTGTCCTAAAGAGTAGCAGTACTAAATCGATAATGATGACATAATTTGAATGCTGAATTGATGTGCTATTTCTTGTAATGATGAATGTTTTGACAAATTGTAATTTGGCCTCTTAGCTTGAGGAGGAGGCAGCGGTGGTTGTCCTCTAAAGAAAAGGTTGGGATACCTTCGTTCAAGGGGTATAAGGTCGTATGTTTATGGCTATATTAAAAGTGCATAAACTGTAATGAGTTTAGCATGTACCCATGTGAGACGAAATACTGTTCTCATTGACAGCTGCGGCTATGTCAAAAATGTATGAATGTGAATGGCAGATCAGATGTCTCTATATAGGCGTATTGATGTAAACCTCTCTAAAGCCATCTACAGCTGTAACATGAGAGGAGTTTGGGGATATTCCCCTTGAGCCCCTTCAATCCAGACATTTCTCTCTTAAAAAGGAAGCCGGTAGTGGTGGAATGTTTGAACCATTTCTGAAATCCTTCGACGTTTGATGCACGCACATTAAGGCCATATTTTGACTTGAAGTGCACACGCCTAACTTAAACTGCCTAGTGAAAGTCGGAATATGTGTcttgataaatatatatatatacacagtaccagtaaaaagtttggacaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90485 lncRNA downstream 43873 73279315 ~ 73279579 (-) True G81949
TU90402 lncRNA downstream 118656 73197547 ~ 73204796 (-) True G81868
TU90401 lncRNA downstream 119124 73197090 ~ 73204328 (-) True G81867
TU90399 lncRNA downstream 119639 73196676 ~ 73203813 (-) True G81866
TU90359 lncRNA downstream 181837 73140632 ~ 73141615 (-) True LOC110528926
TU90529 lncRNA upstream 7870 73381607 ~ 73381822 (-) True G81993
TU90532 lncRNA upstream 26409 73400146 ~ 73400520 (-) True G81996
TU90554 lncRNA upstream 55069 73428806 ~ 73429012 (-) True G82018
TU90560 lncRNA upstream 75095 73448832 ~ 73450435 (-) True G82021
TU90572 lncRNA upstream 77989 73451726 ~ 73451941 (-) True G82030
XM_036984926.1 mRNA downstream 33342 73141948 ~ 73290110 (-) False LOC110528926
XM_036984929.1 mRNA downstream 53477 73140464 ~ 73269975 (-) False LOC110528926
XM_021611105.2 mRNA downstream 53872 73140464 ~ 73269580 (-) False LOC110528926
XM_021611112.2 mRNA downstream 186602 73134653 ~ 73136850 (-) False LOC110528940
XM_021611054.2 mRNA downstream 705234 72612186 ~ 72618218 (-) True plek
XM_021611166.2 mRNA upstream 173361 73547098 ~ 73548953 (-) False LOC110529015
XM_021611213.2 mRNA upstream 263898 73637635 ~ 73639525 (-) True sfr1
XM_021611234.2 mRNA upstream 301921 73675658 ~ 73711293 (-) False slka
XM_021611222.2 mRNA upstream 301921 73675658 ~ 73711294 (-) False slka
XM_021611226.2 mRNA upstream 301921 73675658 ~ 73711294 (-) False slka
TU89447 other downstream 1071534 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 1112363 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 1579643 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 1852993 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 1936929 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 1198710 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 1598475 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 2154606 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 2959731 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 2993556 76367293 ~ 76399956 (-) True ccser2a

Expression Profile