RNA id: XM_021611166.2


Basic Information

Item Value
RNA id XM_021611166.2
length 1856
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110529015
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73547098 ~ 73548953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGACTGAAGACCATTCGATCAGTAAAGATGGAGCCCTCACTGgagtcctcctctcctttcctgctACAGACTTTATGGGACAAGATAAGAGCACAAGAAGACTTTCTCCGCTCTCCCTTGTTCCCTGTCCTGTTCTCCATGACACTCTATCTGAGCTGCTGCCTGCCTTACCTGTGCCTGGACACCCTGTCCTCCAGAGTAGCCCTGGTGCACCGCTACAAGATTCAGTCACAGAGCAGGGTGACCTGGGCAATGGCATGGAGCTGCCTGGCTACCTCCCTGCACACCCACGCTGTGTTCATTTTCCCCCTCAGTGTTCTGCACTGGTACTGGAGACCAGTGGTCCTCCCTGCCCAAGCCCCTGGGTCTCTTCGTGTGGCCTGGGATGTGTTAGCCTGTctccttctctttgacctgcaGTACTTTGTGTGGCACGTGCTGCACCACAAGGTGCCCTGGCTCTACCGGACTTTCCATAAGGTGCACCACCGCTACACAGCCACCTTCGCCCTGACCACAGAGCACTCTGGGATCTGGGAGACCCTGAGTCTGGGCTTGTTTGCTGCAGTGAACCCTAACCTGCTGGGCTGCCACCCGCTCACCAAGATGTTCTTCTTCACCCTGAACATCTGGCTGTCTGTGGAGGACCACTCAGGTTATGACCTGCCCTGGGCCCCTCACAGACTGGTACCCTTTGGGCTCTATGGCGGATCTCCACACCACGACCTCCACCATCTCAAGTTCATGGTCAACTACGCACCCTACTTCACACACTGGGACAGGCTGTTTGGCTCGCTGCTGCATACAGACAAACCAGACACGTTTGATGTAGATGTGTTGGATGCTTCAAAAAGATGTGATACAGCATCAAGTGGTGTGACTGATGTAAGCCATGCACCAGTGTATGAGACTACACAAAGCTGTGTGAAAGACTATGAGGTACAGTTCAGAGGAAAATGAGGACCTGTTCTCTGactgttatttggatttttatgaataatgactaaattatgtatacatttaacttAGAACGAAACTAAACAGAATAGTACTATGTCactgtatgaatgtatgaatcTTATCTCTGTTTTTAAAAATGGCAAAACTGTGAAGAAAAAAATTGAGAATCATGTGACCAATGGACTATTACTGTAGCTGCTTCAATACAATgaatttatgtatgtgtgtgtatatgagtgtataTATGGGTGATTCTGCAACTTTGGCCACTTTGGCCGTGCAAACTTTCAGAAAGTAAAACTTATTCAAACACCATTTTACCAGTATTGTACTTGCCTTTTATTTGTCTAGAAACTATATCTGATAATGCCTGCGATCGTACTATTCaggaatgtatatatttttgtcccttttcccagacagccatagacaaaTGTCATTTCCATCACGTCATTAAACATCCATTTTTGTTGAAAATCAAATATCATACAATTGATTTATGACGGAGTTCTTATACATTTGTACATGAACTTGTATTGAATATTATTTTAAGTGATTTTTAAGGTTTTCCTAATATGAATAATTCAACACGATGCCTGAATGTATAAACTTGCCTTGCTGACAgctgaaaacatttatttatcatGAAAAATAAGATATTTCCACCCAACCTTTTTGTGAGATTATGATAATAACCGTATGATTTCCATATCTAAAAcaaataaatgtatgtaaattataCAGAATATACTAATTTACCTCAAAAATATGGGTTGtgatggaaatgacaaggtgtggtggaaatgacttctatgtaaaaataaaacatgaaaacaAAGTGAACAGCCTGGATTTCACTGGTGTATTTacacaggtactgtagttctcTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90582 lncRNA downstream 57995 73482607 ~ 73489103 (-) True G82039
TU90581 lncRNA downstream 60212 73459791 ~ 73486886 (-) True G82038
TU90577 lncRNA downstream 89017 73457768 ~ 73458081 (-) True G82035
TU90575 lncRNA downstream 90848 73456003 ~ 73456250 (-) True G82033
TU90572 lncRNA downstream 95157 73451726 ~ 73451941 (-) True G82030
TU90732 lncRNA upstream 2845 73551798 ~ 73610100 (-) False G82165
TU90743 lncRNA upstream 15875 73564828 ~ 73606712 (-) True G82176
TU90731 lncRNA upstream 22034 73570987 ~ 73610100 (-) True G82165
TU90784 lncRNA upstream 72385 73621338 ~ 73621803 (-) True G82213
TU90788 lncRNA upstream 77405 73626358 ~ 73626719 (-) True G82217
XM_021611119.2 mRNA downstream 173361 73323452 ~ 73373737 (-) True LOC110528949
XM_021611124.2 mRNA downstream 203515 73323452 ~ 73343583 (-) False LOC110528949
XM_036984926.1 mRNA downstream 256988 73141948 ~ 73290110 (-) False LOC110528926
XM_036984929.1 mRNA downstream 277123 73140464 ~ 73269975 (-) False LOC110528926
XM_021611105.2 mRNA downstream 277518 73140464 ~ 73269580 (-) False LOC110528926
XM_021611213.2 mRNA upstream 88682 73637635 ~ 73639525 (-) True sfr1
XM_021611234.2 mRNA upstream 126705 73675658 ~ 73711293 (-) False slka
XM_021611222.2 mRNA upstream 126705 73675658 ~ 73711294 (-) False slka
XM_021611226.2 mRNA upstream 126705 73675658 ~ 73711294 (-) False slka
XM_021611228.2 mRNA upstream 126705 73675658 ~ 73711294 (-) True slka
TU89447 other downstream 1295180 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 1336009 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 1803289 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 2076639 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2160575 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 1023494 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 1423259 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1979390 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 2784515 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 2818340 76367293 ~ 76399956 (-) True ccser2a

Expression Profile