RNA id: XM_021611234.2


Basic Information

Item Value
RNA id XM_021611234.2
length 4342
RNA type mRNA
GC content 0.51
exon number 18
gene id slka
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73675658 ~ 73711294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTCATTGCGGCTGCGCTTCACGGGTACGCGCTTTCCACAACATGCAGCAAGGAGGAGGTGGCAAGGCACTCTATCAATTCTGAAGTTGGTTCGGTATGAAGGAATATTCCCTATTAAAACCAACCGGAGGAAAATGAAATGTTTAGAAATGGCCACACCATAAATGACTACCGTCTCGTGGAGCTTCAAGTCTGAGAAACTTAATTTCATTCTCGCGTTTATTTTTCCGTTCCTTGTGACGACAGAGGACTTGTATTAGATTGCGTGGTTGGGCCGTAACTACGGGTTATAAGTATGTCTTTGAAGGGAGTTTTATGAAATCGCTACCGCTGAACTTCAAGAATATGCTGCTAGTCTGTTGAGATCCATTTATTAAACCGGTTGTTACATTGTCTAAGAATGACGGTGTGTGTATTGGGGCAGTAACGTTAACCATCCCAAGACCACCCTTGTGAATTTTGTTGAGAACGATCAAATGTAGCCAACGTGTTATGTGAACTGTTTAatttacaataataataatgcgCGATTGATGTTTCAGCTCATGAGTAAATTCGGGTATTGAATTGTAGTTTATTATTATTGGGTTTATTTCAAGAATCGTCTGTCTACTTGTCTAGCGGCTAAATGGACACAGTGGCGCGAGCAAGCTGCCCTATTACAGCCTGATAGACACTTGGACGTTATTGGGAATATTGGATTATTCTTCTTTCTTTGTGGGAATTGCTGGAAAGGCCACTCATACTAAACTCACAGAAGATGTCGTCGTTCTTCAATTTTCGTAAAATCTTCAAGTTGGGGTCTGATAAGAAGAAGAAACAGTATGAGCACGTACACAGAGACGAGAACCCGGAGGAAATCTGGGAGATTATTGGGGAACTGGGAGATGGGGCCTTTGGGAAAGTATACAAGGCCCAGAACAAGCAGACTGGGACCCTGGCTGCTGCCAAGGTGATCGATACCAAGACAGAGGAGGAGTTGGAGGATTACATGGTGGAGATAGACATTCTGGCCTCCTGTGATCACCGTTACATAGTCAAACTGCTGGATGCCTTCTATTATGAAAGCAAACTGTGGATTCTGATTGAGTTCTGTGCGGGAGGTGCTGTCGATGCAGTCATGTTGGAGCTTGAGAGGCCTCTGACAGAGCCCCAGATCCGGGTGGTGTGTAGGCAGACGTTGGAGGCCCTGGCCTACCTTCATGAGATCAAGGTCATCCACAGAGACCTGAAGGCCGGGAACATCCTTTTCTCACAGGAGGGAGACATCAAATTGGCTGACTTTGGCGTGTCCGCTAAGAATACCATGACGCTGCAGAGAAGAGATTCTTTCATTGGCACTCCATATTGGATGGCTCCAGAGGTGGTGATGTGTGAGACATCTAAGGACCGTCCGTACGACTACAAGGCTGACATCTGGTCCCTGGGGGTCACCCTGATTGAGCTGGCACAGATAGAACCTCCTAACCACGAGATGAACCCCATGAGAGTCCTGCTGAGAATAGCCAAGGCCGATCCGCCCACACTCATGCAGCCTTCACGCTGGTCACCAGAGTTCAATGACTTTCTGAGGAAGGCACTGGATAAGAATGTGGACCGTAGGTGGTGCACAGCCCAGCTCTTGCAGCATCCCTTTGTTAGCAGTGTAGTTGACAACAAACCGCTGAGAGAACTGATTGCTGAGGCCAATGCTGACGTCTTAGAGGAGATAGAAGAAGGCAaagaggaagatgaagaagaagagacGGATGCAACTCTGGTGGTGCCCGGACATAAGCGAGCGCCATCAGACACCAGCATGGCCAGCTCTGAGGATGAGAAGCTCTCTGAGACCACCTCTACACTGGACTCAGTCACAGAGAAGACAGAGCCTGAGACTGCAGAGGACAAGGCCAGTGATAAGCTGTCTGACGAGGGCCTTGGGACCAGCGTGGGCGACAGGGCAGAGGGTGAGAAACTGAACGAGGTGTCTGATGCCAGTAATGAGGACTTAGTCAATGGACAGATGAAGGCCATGGAGCCCAAACCAGCGGAAAGCCCTGCTGGAAAGCCTGAGGAGATTCCTGACCGTCAGATCACCATTGTGCCAGAAGCACCATCAGACACACAGGAGAGTGTGATTGTGAGTGAGGAGACAGGggaagaggagaaagtagaggatGGACCTCCACAAGTATTCCTGAAGGAAAGAGTAGAAgtagaggagaagaagacagaggaggaggtgaagaaggAACCAATCAAAGAGGAGCCAGAGGTGATTCTCCAGCCTCCCACCAAATTCACAGATCCAGGGGACCAGCCTAGGAGTGCTTTAGAAGAGCCTGGCGCCGTATCGACCGAGGTCAATGCTAAACCAGAGGAGATTGAGAAGGAGACGCTCATTGAGGAGATGACAGAGGAGGTTAAACCAGAGGCTGATGGGgtcacagacataaacacagacaccGACTTGAATGAAGACACAGACGCAGACAACACAGAATCGGACGTCAACACAGACGCAGAGGTAGACGCAGCTGAGGGCTCCACAGAGGTCTCTGCAGACACAGAAGCCCAAAGAGGCAATAATGTAATACCGGTGGTGATTCTTGAGGAGGGGACCACAGACGAGACGGAGGAGAAGCCACCAGATGAGGAAGCTCCATCCCAGGATGCTGTTTCGGAGTCAAAGACCGACCAGGAAAGCACTCCTGTTAAGTCGGAGCCAGATGTGGAGAAGGATTCTGACTCGGGGAGCAGCTCTGCAGCAGATAGCAACAGCATGGACCTCAACCTATCCATCTCCAGTTTCCTGTCCAAAAAGGCTGAGGCGGGGTCTGTGTCCATACAGGACACGAGACGGCAGAAGAAGACTCTGAAGAAGACCCGTAAGTTCATGGTAGACGGAGTGGAGGTCAGTGTGACCACGTCAAAGATAGTCACCGATAACGACACCAAGAACGAGGAGATGAGATTCCTGAgGCGCCAGGAGCTGAGAGAGCTGCGTCTGCTGCAGAAGGAGGAGCATAGAGCCCAGCAGGCGCTCAGCGACAAGCTgcagcagcagagagaacagatcTACCGCCGCTTCGAGCAGGAGATGACTGGTAAGAAGCGTCAGTACGACCAGGAAGTGGAGAATCTGGAGAAGAAACAGAAGCAGACCATCGAGCGGCTGGAGCAGGACCATACCAACCGACTGAGGGACGAGGCAAAACGCATCAAGGCCGAGCAGGACAAGGAGCTCTCCAAGTTCCAGAACATGCTCAAGAACCGCAAGAAGGAGGAGCAGGAGTTTctgcagaagcagcagcaggagtTGGATGGAGCCCTGAAGAAGATCATCCAACAGCACAAACATGAGATCGCCACCATCGAGAGAGACTGCCTCAACCACAAACAACAGCTtatgagagCTCGAGAGGCAGCCATGTGGGAGCTGGAAGAGCGCCACCTGCAGGAGAAGCACCAGCTGCTCAAGCAGCAGCTCAAGGACCAGTACTTCATGCAGAGACACCAGCTGCTCAAGAGACACGAGAAGGAAATGGAGCAGATGCAGCGCTACAACCAGCGTCTGATTGAGGAGATGAAGAACAGACAGGCCCAGGAGAGAGGTCGTCTGCCGAAGATCCAGCGGGGTGATGCCAAGACACGCATGGCCATGTTCAAGAAGAGCCTCCGCATCACCTCTGCACCTGGCACCCCGGAGCAGGAAAGGGAGAAGATCAAACAGTTTGCTGCCCAGGAGGAGAAGAGGCAGAAGAACGAGAGACTCCATCAACATCAGAAACATGAGAACCAGATGAGAGACCTGCAGCTGCAGTGTGACTCCAACATCAGAGAGCTGCAGCAgcttcagAATGAGAAGTGCCATCTCCTGATTGAACACGAGACTCAGAAGCTGAAGGAGCTCGATGAAGAGCACAGCCAGGAGCTGCAGGAGTGGAGGGAGAAACTGCGGCCCAGGAAGAAGGCCTTGGAGGAGGAATTCACACGCAAGCTCCAGGAGCAGGAGGTCTTTTTCAAGATGAGCGGGGAGTCGGAATGCCTTAACCCCACGACCCAGAGCCGAGTGTCCAAGTTCTACCCCATCCCCAGTGTGCACAACTCTGGTTTATAGCCCTCCCCAGCACAGGAACATACTGGCTGGGCTCATAGACTGTGTCCCCATGGTGGTGGGGAGGACCTCAGCCCTGTTGTTATCTGGAAACTAGCGTTGGTCTATTGTGGATCTTAGGCTAGTGTGATGTCTTCACACAAGCATGTACATACACtaatgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaatatttaaaaaatatccattaaaataacatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91208 lncRNA downstream 240 73675087 ~ 73675418 (-) False G82608
TU91209 lncRNA downstream 289 73675087 ~ 73675369 (-) True G82608
TU91202 lncRNA downstream 727 73672084 ~ 73674931 (-) True G82605
TU90807 lncRNA downstream 29719 73645516 ~ 73645939 (-) True G82234
TU90788 lncRNA downstream 48939 73626358 ~ 73626719 (-) True G82217
TU91255 lncRNA upstream 28894 73740187 ~ 73772122 (-) True G82654
TU91442 lncRNA upstream 286144 73997437 ~ 73998413 (-) True G82834
TU91484 lncRNA upstream 369992 74081285 ~ 74085905 (-) True LOC110529148
TU91540 lncRNA upstream 455992 74167285 ~ 74167528 (-) True G82931
TU91565 lncRNA upstream 486094 74197387 ~ 74197605 (-) True G82951
XM_021611213.2 mRNA downstream 36133 73637635 ~ 73639525 (-) True sfr1
XM_021611166.2 mRNA downstream 126705 73547098 ~ 73548953 (-) False LOC110529015
XM_021611119.2 mRNA downstream 301921 73323452 ~ 73373737 (-) True LOC110528949
XM_021611124.2 mRNA downstream 332075 73323452 ~ 73343583 (-) False LOC110528949
XM_036984926.1 mRNA downstream 385548 73141948 ~ 73290110 (-) False LOC110528926
XM_021611256.2 mRNA upstream 115131 73826424 ~ 73886957 (-) True LOC110529113
XM_021611274.2 mRNA upstream 300698 74011991 ~ 74062308 (-) True LOC110529136
XR_002474341.2 mRNA upstream 371646 74082939 ~ 74085971 (-) False LOC110529148
XR_005052844.1 mRNA upstream 371646 74082939 ~ 74085971 (-) False LOC110529148
XR_005052845.1 mRNA upstream 371646 74082939 ~ 74085971 (-) False LOC110529148
TU89447 other downstream 1423740 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 1464569 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 1931849 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 2205199 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2289135 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 861154 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 1260919 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1817050 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 2622175 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 2656000 76367293 ~ 76399956 (-) True ccser2a

Expression Profile