RNA id: XM_021611270.2


Basic Information

Item Value
RNA id XM_021611270.2
length 4427
RNA type mRNA
GC content 0.45
exon number 27
gene id LOC110529121
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73952690 ~ 74008104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTCACTTTGACAAATTCCTGGACGTGAGCAGATCAGTTTAAGCGACTCTTGATTGTAACGGTAACGCAGTGAATATTTCACAAGTTGATCAATCTACTACCACCGTCaaacttatttttattttttaacatatTTGGCAACAGTGAGTTGAAAACCATGGTCGTCTCGGGGTCAGTTTGGTGTTGGGCTCTTTTGACTTGCATTTTAATCTCTTTTTACAATATGTTGACGGCATACGCTGAAATAAGTTGGCCAGCGAGTTCTACGACGACGAACGTTTGGTTTAACCGTATGGATAAATTGCCTCTGGAGCTGCGCGCAAACCTAAAATCCGCATGGGTCAAAGTCCCAAAGTATATCGACAAGGAATCCACATTTTCCAGAGATTTTAGAATGGAAACAATTGATGGAAAAGCCGTAGTTCCAAAAGGTGAGGAGAAATTGCCAAAGGACTTGGACGGAGTTAATGGGAAAGTGCCACCAGACGCTGTATCTACTGTCAGAGATAAAAAGGCGCCAAACCGTTCCAAGCATTTTACTGCTGACAGCAAAAAGTCAGACAGTTCCTTTGAAGTTAAAGACGGTACATTTGCTTCAAGTAACCGTACGAGGACAAAGCGAAGCACATCATTTGGCGAATATTCGGACAGGAGTCAAATCGGAGGTCCTGGTGACGCATTTTCAGCCGAGAAGCTTGTGGAGCCTTTACAAGGCGTTTACAGTTCGAGGACAGAATACCGACGAACTGGGGAGGACGCAAGAACTAGCCCGAGGCAAAGTGAGCCGCTTCTGGTTACCTCCACTTTCCCTCTGTCCGGAGACTCTGCGCACAACCAGGCAATGGGGCACTGGGTTGGAGAAAACAGCAGCGTGATCCTGACCTTGACGAAGCAGTATGACTTTAACTTGGGTGCTTTCACTGAGAGTTCTCTGTGGAGATCAGTGGACTATGGGAGCACTTATATAAAACTGAATAAAAAGGTTGGGTCAACCTTGGCTTGCCTATACGTCTGCCCAACCAACAAGAGAAAGATAATGATGCTTAGCGACCCAGAGCTGGAGCAAAGTGTACTCATCAGCTCAGATGAAGGTGCCAGCTTCGAGAAGTATCCCATTAACTTCTACATGGACGGTCTGCTGTTTCATCCAACTCAGGAAAACTGGCTGCTGGCTAGCAGTCCTGACAACAAGGTGTACAGCACAATGGATTTTGGAAGAAAATGGCAGTTGGTTAGTGAGAATGTAACTCCTGGCCGGTTCTTCTGGGCACAAACTGGGCTAGACAGAGAGGCAGATGTGGTCCACATGGAGACCCACATCGCCAAAGGACGTGCTCAGTATGTTAAGTGCAGAGCTCAACGATGCACAGAATCAAACAGACAATACCTGTTCCCGGGATACATAGACAAAAATTCTCTGGTTGTTCAGGACAACTATGTGTTTGTTCAGGTTACCAAGTCAGGGCAAGCGAGTTACTTTGTGTCCTATATGAGGGAATCATTTAAGCGAATTCAGCTACCCAAATACTGTCTTCCTAAGGACATGCACATCATCAGTACAAATGAGAAGCAGGTGTTTTCTGCTGTACAGGAGTGGAACCAGAATGACACCTACAGCCTGTATATCTCAGACTCTCCAGGGGTATACTTCACTCTGTCTCTAGAGAACCTCCGGACCAGAAGAGAGCCAGGTGGAAATTTACTGGTCGACCTGTATAAGGTAGAAGGAATAAATGGCATATTTCTAGCCAACAAATTGGTGGGCCATGAAGTGAAGACATTCATCACCTATAACAagggtcagacctgggccctgctGCAAGCCCCCAACACTGATGTGGCTGGAAACAGTCTGCACTGCATCCTGCCATTTTGTTCTCTGCATCTGCACCTGGATACGCCAGTGAACCCTTACCTGCCTGGACGCATCTTTAGCATGGACTCAGCACCTGGGATCATTGTAGCTACAGGCAACATTGGTACAGAGCTGTCCTCCGCTAACCTTGGAATGTTTATAACATCTGATGCAGGAAATACCTGGAGACAGATTTTTGAAGAAGAACTCGGTGTTTGGTTTCTTGACAATGGAGGTGCTTTAGTTGCAGTTTCTTTAGTTGCAACAGTACCCATCCGGCACGTATGGGTAAGTCTGGACGAGGGTAAGAAATGGGATCGCCACAGTTTCTCTCTGGCTCCTTTGTTTCTGGATGGAGTTCTCATGCAGCCAGAGAATCACATCATCACTTTCACTGGACACTTAAGCCGTGTTTCAGAATGGCAGCTGATAAAGATTGACTACAAAGCCATCTTTAGCAGGAGATGCATGGATGGAGATTATCAGACTTGGCACCTACATAACAAGGGAGAGCCATGTGTGATGGGAGAGAAGCAGACCTTTATGAAACGGAGGCCGGGTAACCGCTGTATGCTGGCCCAGGACTACTCCCGAGTCATATCCTCAGAACCATGCATCTGCAGGACATATGATTTTGAATGTGATTATGGGTATGAACGTCAAGCCGATGGAAAGTGTACCCCTGCTTTTTGGTTCAACCCAAGCACTGTGACAAGAAGCTGTAGCACTAGCCATAACTACCTCAACAGCACAGGGTACAGAAAGGTTTTGTCCAATAATTgcaaagagggagggaaggatgtgtACTCCCCCAGGAAACAGCATTGTTCCCCCAGGCCTCCCAGAGGCCTCAGACTGACTACCAGCCAGGGAGAGCTCACCGCCACCGTGGGCAGTAATGTCACCTTCCTGGTGTATCTGGACGATGGAAACTCGTTGTGGACTTATATCCAGCTAGACTTTGGGGACGGCATCACTTTCATGTACAACCTGAGCCGGAGAGGCGATGGAATCAAACACAGCTATAGAGAAGATGGGATCTTCAGAGTGACAGCACATGCAGAGAACAGCCAGGGCTATGACATTAGCTCCCTGTTCCTACACATCACCAGCCCAGTGGAGCGTGTGTATCTCTCAGCTCCTATTGTTGCCATCAGGAAGAAAGAAGCTAACCTAACGGCTGTGGTCTGGCCTGTCCACCACAGAACACTCACCTTCTTCTGGTGGTTTGAAAACAGCTCCGAGCCCTTAATAACCTTGGATGGAAGCATCTCGTACACGTTTTGGAAGGAAGGCATGAACAGGATCATGGTCCAAGTGTCTTCTGGGTGCAACATACTGCAGGATACCAAGGTCATCATTGTCAAAGATTTCTTCAAATCCCTGCTGTTATCGTTCTCTCCGGCTTTGGACGAGCACAACCCTGACATCCCGGAGTGGAGAGAGGACGTGGGCCGCGTGGTGAGGACAGCTGTATCACAGGTTTCTGGATTTCCAGAGGAACGGCTGTTAGTATCTTTGTTTCCAGGTGTTCCAACAACAGCAGAACTATTTATCCTGCCTGAGACACAGTTGCCTGAACATGGGAAGCGGAACAAAGAGGACTTAATATCAAACCTTGTTATAAATGCCCTGAACCACGGATTGGTCCAGTTTGAGTTGAAAGCTGACActcaaatatttgttttcatCACACAGCTAACTTTGGCACCTCTGGTTTACTCCAACCCTATTCACAGTAGCTCAGTCATGCTGATGTTGCTGTCTGTGGTGTTTGTTGGTTTAGCTGCGTTTTTCATCTTCAAGTTGAAAAGGAAAATCCCTTGGATCCATGTCCAGGCTGAGGAGAACCAGGAAAAGGAGCCGGAGATGATTGGCACGGTCGGGCAGAACAATACCATGTCCAAGATGAAGCTCAGTGAGTTCCCCACAGAGAAGGAACTCATGGAGAAAGAACTGAAGACCAGGAGCAGAGGAGAATATGGAAGAAATGGGGAGAGAGTGATCACAAGAGAATTTCCTACTTGTACTAATGTCTAAGAAATTTGATTATGAGTACTGTAAGTACAGATTGTGGTGTTTCAATGTGCCATTTTAAAAAAATCTTTGTTTTCACCATTTACTTTGGTCGCTGAGAACTGCTACTAAATATGTATTTCACAAGACTTTAGAAATCTACTATATAGCAGGAGAATATATTATTTTGTGTATATACATTATTTCAGTATTGAAGAATTGTAATTTGACATCTATGGATGTTGTATTAGGCATTAGAAAAATGCCATTGTTGAAAAGAATATATTGTGTTCTTAAGTGCCAGATTGCATTGCTAATGAATTATTTAGCTCAACATGATTATCTCacggatgttctcttgataatgaCAACTGCATCTATTGTTCTATTGCACAGGGGAGGTGGAATGTAGGTAATAAGACAAAAggcatactatactgaacaaaaatgtaaatgcaacacgcaacagtttcaaaccaaatgttatttgtcacatgcgccaaatacaacaggtgacatgcttacttacaagcccttaaccaataatgcagttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90817 lncRNA upstream 277294 73675092 ~ 73675396 (+) True G82241
TU90815 lncRNA upstream 277752 73672080 ~ 73674938 (+) False col17a1b
TU90816 lncRNA upstream 277752 73672080 ~ 73674938 (+) True col17a1b
TU90661 lncRNA upstream 406415 73546001 ~ 73546275 (+) True G82105
TU90608 lncRNA upstream 452741 73499646 ~ 73499949 (+) True G82064
TU91157 lncRNA downstream 159834 74167938 ~ 74168176 (+) True G82564
TU91164 lncRNA downstream 177484 74185588 ~ 74189683 (+) True G82568
TU91171 lncRNA downstream 185314 74193418 ~ 74193623 (+) True G82575
TU91128 lncRNA downstream 219799 74227903 ~ 74229003 (+) True G82535
TU91591 lncRNA downstream 228133 74236237 ~ 74236439 (+) True G82975
XR_005051521.1 mRNA upstream 9116 73943018 ~ 73943574 (+) True LOC118964464
XM_021611240.2 mRNA upstream 142135 73715221 ~ 73810555 (+) False LOC110529112
XM_021611249.2 mRNA upstream 142135 73715222 ~ 73810555 (+) True LOC110529112
XM_021611215.2 mRNA upstream 280383 73647943 ~ 73672307 (+) False col17a1b
XM_021611311.2 mRNA downstream 103008 74111112 ~ 74160271 (+) False LOC110529161
XM_021611304.2 mRNA downstream 115511 74123615 ~ 74160271 (+) False LOC110529161
XM_036985163.1 mRNA downstream 131016 74139120 ~ 74160271 (+) False LOC110529161
XM_021611296.2 mRNA downstream 132398 74140502 ~ 74160271 (+) True LOC110529161
XM_021611321.2 mRNA downstream 163629 74171733 ~ 74183699 (+) True LOC110529185
TU90667 other upstream 380953 73551616 ~ 73571737 (+) False G82111
TU90669 other upstream 380953 73571066 ~ 73571737 (+) True G82111
TU87354 other upstream 2876588 71036470 ~ 71076102 (+) True ccdc85a
TU86384 other upstream 3297729 70571665 ~ 70654961 (+) True G78121
TU83729 other upstream 5577761 68374505 ~ 68374929 (+) True G75747
TU92487 other downstream 901121 74909225 ~ 74909806 (+) True G83836
TU92479 other downstream 1104556 75112660 ~ 75114190 (+) True G83829
TU92648 other downstream 1136760 75144864 ~ 75145512 (+) True G83979
TU94291 other downstream 2450020 76458124 ~ 76459823 (+) True LOC110529610
TU94822 other downstream 2623641 76631745 ~ 76635936 (+) True G86019

Expression Profile