RNA id: TU91484


Basic Information

Item Value
RNA id TU91484
length 2435
lncRNA type sense_over
GC content 0.46
exon number 7
gene id LOC110529148
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74081285 ~ 74085971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATGCAAGGGCAGCTGGAATTGTGACGTGTGAAAGGAGGCCCAACCCATAGGAGGAAAACTGACCTGGACCACCAGCTTGTTGGTGATGCCTGCAAGGAGGCCATATCATTCCTTGTCCACACATCCAATGAAAAACACATCTATCAGAAGATGTAGGAGGTATTCCAGTATCGCCAGGAGCTAGTTTATAGTCCAGACAGAAGCACAGATGTCCTCAGTCTTTCCCAGGTTTCTGGGAATCATACGATTGGTGAATCAGGACTTTTTGCTGATGCTCGACGATGAAACGTCCTCTAAGCTCCTTGAAAAATGGGACACTGTATTGAAGCCTAAAGTCATCAAACTGGCAAAATCCCTGACTACCACAGCTCCTGAAGTCTGCAGAAAAACTGCTGGAGAATGACAGCAAAACCAACTGGGACAATATGTCCTCCCTGCTGCTGCttcatctcctccctccaccagCAGGAGGGAAGAGGACCAAACTCAGTGCCAGTGAAGCTGTCGGCAGACTAGTGCACTTTCATAAGTCATGCTGCAGCATTGAAGACTATCTTGATGGGAGCCATGGTCGACAGCCATACCTCCTTGCCGTCGGAAGAAGACAGAGCAAGATTGACAACTACTACATTGTGGTGGACAAGAGGCTAGTTCCCTGCCAGGCAAATAGTGATCTGTGTGCGTTTGAACTATTCAAAGTCCACTTTGTCTTTAACCTGAcataaactcagtaaaaaaagaaacgtcaactgcatttattttcatcaaacttaacgtgtaaatatttgtatgaacataacaagattcaacaacagacataaactgaacaagttccagagacgtgactaacagaaatggaataatgtgtctctgaacaaagggagggtcaaactcaaaagtaacagtcagtatctggtgtggtcaccagctgcattaagtactgcagtgcatctcctcctcatggactgcatcaaattagccagttcttgcatctgcaagttcccagacatttctggggagaatggccctcaccctccgatccaaaaggtcccagacgtgctcaatgggattgagatccgggctctttgctggccatggcagaacactgacattcctgtcttgcaggaaatcacacacagaacgagcagtatgactggtggcattgtcatgctggagggtcatgtcaggatgaacctgcaggaagggtaccacatgagggaggaggatgtcttcctgtaatgcacagcgttgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccacctcgatccTTCTCCAGAGTACagtcctcggtgtaacgctcattccttcgacgataaacacgaatccgaccatcactcctagtgagacaaaaccgcgactcgtcagtgacgagcactttttgccagtcctgtctggtccagcgacggtgggtttgtgcccataggcgacattgtgccagtgatgtctggtgaggacctgccttacaacaggcctacaagccctcagcccAGCTTCTCTCAGCCTGACGAGGACAGtcttgagcactgatggaggggctgtgtgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatgttcagatgcaccgatcctgtgcaggtgctgttacacgtggtctgccactgcgaggatgaccagctgtccgtcctgtctccctgtagcgctgtcttaggcgtctcacagtatgggtATTTCAATTTATTGCCCATGCCACTTCTGCAGTCCTCGTGCCTCCTTTcagcatgtctaaggcacgttcacgcatatgagcagggaccctgggcatctttcttttgctgtttttcagagttagtagaaaggcctctttcgtGTCCAACGTTTTCATAACtgatcttaattgcctaccgtctgtaagctgttagtgtcttaacgaccgttccgcaggtgcatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccatttacaatgaagatctgtgaagttatttggatttttatgaattatctttgaaagaccaggtcctgaaaaggggacgtttctttttttgagtTAATGATGATTCTCGTCAACTTCTACATTGTGCAGACAATCCTTTGTTTGACATAATTGAGTAATAGTCAGATTATTGCCAACTTTGTCAAGAAAATTGCAGAATTAGTCTTAGGAGGGCATCCACTTGTGTTTAAATAGTAACTCTGCAAATACTTGTTCGCATATAATATATGTACTGATGTGTCTGTGATGCACTGATTTCATTCTGATGCATCCTCTCTTTTGTAGCCTAAATAAATTAAACTAAGCAGAGTCATTAATATTGTAACAAATCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91442 lncRNA downstream 82872 73997437 ~ 73998413 (-) True G82834
TU91255 lncRNA downstream 309163 73740187 ~ 73772122 (-) True G82654
TU91208 lncRNA downstream 405867 73675087 ~ 73675418 (-) False G82608
TU91209 lncRNA downstream 405916 73675087 ~ 73675369 (-) True G82608
TU91202 lncRNA downstream 406354 73672084 ~ 73674931 (-) True G82605
TU91540 lncRNA upstream 81380 74167285 ~ 74167528 (-) True G82931
TU91565 lncRNA upstream 111482 74197387 ~ 74197605 (-) True G82951
TU91572 lncRNA upstream 120402 74206307 ~ 74207126 (-) True G82958
TU91577 lncRNA upstream 127965 74213870 ~ 74214184 (-) True G82963
TU91580 lncRNA upstream 131474 74217379 ~ 74217650 (-) True G82966
XM_021611274.2 mRNA downstream 18977 74011991 ~ 74062308 (-) True LOC110529136
XM_021611256.2 mRNA downstream 194328 73826424 ~ 73886957 (-) True LOC110529113
XM_021611222.2 mRNA downstream 369991 73675658 ~ 73711294 (-) False slka
XM_021611226.2 mRNA downstream 369991 73675658 ~ 73711294 (-) False slka
XM_021611228.2 mRNA downstream 369991 73675658 ~ 73711294 (-) True slka
NM_001160549.1 mRNA upstream 97908 74183813 ~ 74189681 (-) True smndc1
XM_021611333.2 mRNA upstream 143343 74229248 ~ 74234117 (-) True LOC110529206
XM_021611387.2 mRNA upstream 262885 74348790 ~ 74378154 (-) False mgmt
XM_021611379.2 mRNA upstream 273835 74359740 ~ 74378153 (-) True mgmt
NM_001124280.1 mRNA upstream 391266 74477171 ~ 74478278 (-) False gnrh3
TU89447 other downstream 1829367 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 1870196 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 2337476 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 2610826 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2694762 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 486542 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 886307 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1442438 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 2247563 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 2281388 76367293 ~ 76399956 (-) True ccser2a

Expression Profile