RNA id: NM_001160549.1


Basic Information

Item Value
RNA id NM_001160549.1
length 1479
RNA type mRNA
GC content 0.42
exon number 6
gene id smndc1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74183813 ~ 74189681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGAGGAAAGGAACTGTTTTGTTGTTGTCGTCTACGATTTGAGTTATTAGAAACAATTTAAGTGAAATCTGAATATCCTGAGTCTATTAATTTGAAGCAAATACGAGAAGATGTCAGAAGATTTGTTGAAACAGTTGGGCAGCTACAAAGCCCAGTTACAACAAGTGGAAGCCGCCTTATCAACCGATCCTGAGAACGAAGACCTTCTCAAATTACAGAAAGACTTATCGGAAGTCATAGACTTGACAAAAGACCTCCTGACGTCGCAGCCCTCTGAAGGTACTGCTAGTGCCAACAGCTCTGATGCAGCCCCCTTGAAACACAGCTGGAGCGTTGGGGACAGGTGTATGACTGTGTGGAGTCAGGATGGACAGGTGTATGAGGCTGAGATTGAGGAGATAGACGGCGAGAACGGCACGGCGGCCATTACCTTCTTCGGCTACGGGAACGCAGAGGTGGTGCCACTGCAGAACCTCAAACCTGCCGAGGAGGGCAAGCATTCTGAGGAGGACGGGAAACCCAAGTCCAGGAAAGAGCAGATAGCAGACCAGAGGGAGTACAAGAAGAAGAAGGCCCAGAAGAAGGTGCTGAGGATGAAGGAGCTGGAACAGGAGCGAGAAGACCAGAAATCCAAGTGGCAAAGTTTCAACAACAAGGCCTACAACAAGAACAAGAAAGGACAGGTGAAGAGGAGTATATTTGCATCGCCGGAGAGCGTAAACGGAAAGGTGGGAGTAGGAACATGTGGCATAGCAGACAAACCCATGACCACGTATCACGACACATCCAAATATAACGTCAGGCATCTCATGCCACAGTGACCAAAAATGTTTTCTTGGTGTTTGAAGTATCCCATTGTATAGTAGGAGGATCAGTGTTTACCATTGTGTTTATATGGCTTAGGTTACTCAAGTAAAGGAGCTTTGAAACTAATCGCTTACTCACCATTGGTTGGCTCATTGGAATATTGTTCTTACCGGTATGTCATATAGAACAGCAGAATTCTTAATAAAATAAATTACCCCTGTAATGGATCAGCACAAATAAGTGTACTCAAGTGTTTAGATTGTGGTGACATGTCTGGATTGCTGTATCTTTCTGAATGCAACAAAGGCAAAAACTATAATATGTGCATGTTTCAATGTTACACATTTATTATAGCTTTTTCAGGGTGAACTGGGCTATATTAGACATTTTTACTTTTTGCTGTTTAGTGGTAATAACTATTTTTAAagcatttcagttttgtacaTTTACAGTAAAACAAATTGTCATTTTTGTTGAGGTAAGATGTCCCTCTCATTTTGCCCTGAAATTACGAGTAGGTTTCCATATTGGTACTGAATGTTTAACAGTTCCTCCAGATGGCAGTAATGCATTTTGTACCATCTTTGTTTCCGTGACGTACATCAATGACCTTGTATCACTGCTGGCGACGTATGCTTTTCTTTTTCTCAATTAAAATCAGGGATGAGTTG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12839 SMNDC1, SPF30; survival of motor neuron-related-splicing factor 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91540 lncRNA downstream 16285 74167285 ~ 74167528 (-) True G82931
TU91484 lncRNA downstream 97908 74081285 ~ 74085905 (-) True LOC110529148
TU91442 lncRNA downstream 185400 73997437 ~ 73998413 (-) True G82834
TU91255 lncRNA downstream 411691 73740187 ~ 73772122 (-) True G82654
TU91208 lncRNA downstream 508395 73675087 ~ 73675418 (-) False G82608
TU91565 lncRNA upstream 7706 74197387 ~ 74197605 (-) True G82951
TU91572 lncRNA upstream 16626 74206307 ~ 74207126 (-) True G82958
TU91577 lncRNA upstream 24189 74213870 ~ 74214184 (-) True G82963
TU91580 lncRNA upstream 27698 74217379 ~ 74217650 (-) True G82966
TU91583 lncRNA upstream 35941 74225622 ~ 74226757 (-) True G82968
XR_002474341.2 mRNA downstream 97842 74082939 ~ 74085971 (-) False LOC110529148
XR_005052844.1 mRNA downstream 97842 74082939 ~ 74085971 (-) False LOC110529148
XR_005052845.1 mRNA downstream 97842 74082939 ~ 74085971 (-) False LOC110529148
XM_021611274.2 mRNA downstream 121505 74011991 ~ 74062308 (-) True LOC110529136
XM_021611256.2 mRNA downstream 296856 73826424 ~ 73886957 (-) True LOC110529113
XM_021611333.2 mRNA upstream 39567 74229248 ~ 74234117 (-) True LOC110529206
XM_021611387.2 mRNA upstream 159109 74348790 ~ 74378154 (-) False mgmt
XM_021611379.2 mRNA upstream 170059 74359740 ~ 74378153 (-) True mgmt
NM_001124280.1 mRNA upstream 287490 74477171 ~ 74478278 (-) False gnrh3
XM_021611412.2 mRNA upstream 290257 74479938 ~ 74497600 (-) False LOC110529277
TU89447 other downstream 1931895 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 1972724 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 2440004 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 2713354 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2797290 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 382766 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 782531 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1338662 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 2143787 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 2177612 76367293 ~ 76399956 (-) True ccser2a

Expression Profile