RNA id: XM_021611387.2


Basic Information

Item Value
RNA id XM_021611387.2
length 2317
RNA type mRNA
GC content 0.44
exon number 6
gene id mgmt
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74348790 ~ 74378154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCACATCAATTAAAACGGGGGACAGTTAGTAGTTCATTAGAGAGAGCCATATTGCACCGTCGGGTAGCGCTGCCAACCCTTGCTATCTGGGGCAGACTGGCAGAGGGTCCAGATGGCACGGAAATCCTCAAAGATTTGAAAATGTTCTCTGCAGGGGTGGCGTTTTCTCCCCGCTCCCACCCTTACCACTGAGTGGGGTGTGGGCCTTGCCTGGCTTGCCACCCACAGAAGCTCAATTGGAAACTTGCATGGAAATATAGTACAGAGAAAGTGTAGAGAGTAGGCTACCTAGCTGCTGCAAGCTCATGAAGATACATGAGTTATGAGTGGATCAAAGAAGCACCAGGAAAGTTGTGGGTGTCACAAATATTTTCATTTAAGTATTCTAGTGGGTGAGATTTGTTTAACTATATTTTTTTCCTACCTGCTTTTAAAAGTTTGATTAGGAATACAGCCTTCACAAGGATGACACATTGTATATTAACTGAATACTATAGTGCATGTGTGATTTTAGTAGTATAGCTGTATTATTTGCTGTGGGGCATTGGGGGAAGCATGTCTGTCCAAATACGGAGTAAAGATAAAGTAGATGCAGCCGTTTGCCTCTTTTGATTGGCTGCCTCCTACACGTTGTGGGAGAAACCAGGAAGAGAAACAACTACACATTGTTACATGGAGCAGGGCAATAACATGAAGAGTCCGAGTCAGTGCAGACAGAGGACCATCTCGTTGCAAAGTCCCCTGGGAAAGATCCAAGTCAGCGGATGTGAAAATGGTGTGCACACCATCCAGATCCTAATGGATGTTCCACCTGCAGaaagGAGTGGTGACACCTCCCTAAGCTGTGTGGTCACTGTTAGCAATGGCCAAGAGGAAATGGGCCCAGAGTTGCAGCACTGCGTGGAATGGCTTCGGGCCTACTTCAGCGAGCCGTGGACCGTGGGGAGGCTCCCACTCCCAGTCTTTCATCACCCCACCCTGCATGGAGATTCCTTCACCAGCCGGGTTCTGCAGACTCTTGTGCGGGACGTGAAGGTGGGAGAGACGGTGTCGTATAAGCGGCTGGCTGAGATGGCAGGAAACCCCAGGGCCGTGAGAGCTGTGGGAGGGGCCATGAGGAGGAACCCGGTGCCTCTTCTCATCCCCTGCCACCGCGTCATCTCCAGCGGTGGTCAGAGTGGGATGTACATGGGCGGCAAAGGTAACCATCTCAAACAATGGCTGCTCACCCACGAGAAGGTCAAAGAGGAAGACTGAAGCACAATGATGTGATATAgAGTACTGTTTCATAAGGATTCAGAAATCCACCCAATTTTTACAGCCCTTTTCCTGAGTTGAGCTGTTCTGTGAGTCTTTGTGCGGCAAACCTGTCGCGACCCTCAGCGGATATGGAAATGGGGTAAGGTTTTATGGGCCAAAAGGAATGGACATAGTCAAGCTCAGGGGGCATGAATATTGGATGTTATTTCTGGTCTCTTTTTATGTAATCCATTGCCAATACATTATTAATAGATGATATCATATCCAGAACTAGTGGACAAAGCACTACTGAGGGGTACTATGAAGGGAGTTCTATGTGTCAGAGTATGGCATAAAAATGCAGTTGAAGTGATATTATTTTATCACTGTCGTCTCTCACTTTCTGACCTGGGTTTCTGTACTATGACTGTTCTTGGTTGAGTGTGCTTTATGGAAGAAAATCCTGCATATGTGGGTCTGAAATACTTTAGATCATTAATATAGTATCGAATGATTTTTTTTACCATTAGGATACTTTGCTATTCCACAGTGAATAAAGTAGATATATTTCTGCTGACCTATCTTTATCTATTTTTTCAAGCAGACCAGATTGCAGATAGACAGACCAGTGGTCACCCATGTGAACACATGATTTTATGTAAAGTTAATGTGATAAAATGACAACATGTGAAGCAACGTGTAAAAACAACATGGGGATGCAACATTTCATTTCTCAGAATATTGTATGATGGTACACTGGAGGTTTGTGTCTAGTTGTGGTGAAAATACGATAAATCTACAACCAGTTACTGTGTTTTAATTAAGGTGTTAATGTTAAAGGACAGTATGCTGATGTATGTTGATTAGTCGCGACTTAACCTCACTTAGGATTTTAACTCACAATCTTTTGGTTGTTAGCTACCTGAAGTTCCTCCTGCGCCACCATGTCTGTACATTTATTGCCAAGAATACGTTTCTGCACTTTGCCGAAAGCtacagtaaaaataaagtaaatataTACAACAACTTCAAGGTATTATTTTTATAAGATGACAGTATTTAaatgttccctttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91770 lncRNA downstream 34080 74312503 ~ 74314710 (-) True G83143
TU91760 lncRNA downstream 51056 74297030 ~ 74297734 (-) True G83134
TU91737 lncRNA downstream 90834 74257718 ~ 74257956 (-) True G83111
TU91624 lncRNA downstream 94371 74254169 ~ 74254419 (-) True G83008
TU91603 lncRNA downstream 105645 74242935 ~ 74243145 (-) True G82987
TU91826 lncRNA upstream 12859 74391013 ~ 74391300 (-) True G83197
TU91846 lncRNA upstream 37495 74415649 ~ 74415881 (-) True G83217
TU91847 lncRNA upstream 38085 74416239 ~ 74416460 (-) True G83218
TU91907 lncRNA upstream 85659 74463813 ~ 74464105 (-) True G83278
TU91917 lncRNA upstream 93832 74471986 ~ 74472260 (-) True G83288
XM_021611333.2 mRNA downstream 114673 74229248 ~ 74234117 (-) True LOC110529206
NM_001160549.1 mRNA downstream 159109 74183813 ~ 74189681 (-) True smndc1
XR_002474341.2 mRNA downstream 262819 74082939 ~ 74085971 (-) False LOC110529148
XR_005052844.1 mRNA downstream 262819 74082939 ~ 74085971 (-) False LOC110529148
XR_005052845.1 mRNA downstream 262819 74082939 ~ 74085971 (-) False LOC110529148
NM_001124280.1 mRNA upstream 99017 74477171 ~ 74478278 (-) False gnrh3
XM_021611412.2 mRNA upstream 101784 74479938 ~ 74497600 (-) False LOC110529277
XM_021611396.2 mRNA upstream 101784 74479938 ~ 74531625 (-) False LOC110529277
XM_021611404.2 mRNA upstream 101784 74479938 ~ 74531625 (-) False LOC110529277
XM_021611433.2 mRNA upstream 331176 74709330 ~ 74728846 (-) True LOC110529307
TU89447 other downstream 2096872 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2137701 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 2604981 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 2878331 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2962267 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 194293 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 594058 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1150189 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1955314 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1989139 76367293 ~ 76399956 (-) True ccser2a

Expression Profile