RNA id: XM_021611379.2


Basic Information

Item Value
RNA id XM_021611379.2
length 1768
RNA type mRNA
GC content 0.47
exon number 5
gene id mgmt
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74348790 ~ 74378154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACATCAATTAAAACGGGGGACAGTTAGTAGTTCATTAGAGAGAGCCATATTGCACCGTCGGGTAGCGCTGCCAACCCTTGCTATCTGGGGCAGACTGGCAGAGGGTCCAGATGGCACGGAAATCCTCAAAGATTTGAAAATGTTCTCTGCAGGGGTGGCGTTTTCTCCCCGCTCCCACCCTTACCACTGAGTGGGGTGTGGGCCTTGCCTGGCTTGCCACCCACAGAAGCTCAATTGGAAACTTGCATGGAAATATAGTACAGAGAAAGTGTAGAGAGTAGGCTACCTAGCTGCTGCAAGCTCATGAAGATACATGAGTTATGAGTGGATCAAAGAAGCACCAGGAAAGTTGTGGGTGTCACAAATATTTTCATTTAAGTATTCTAGTGGGTGAGATTTGTTTAACTATATTTTTTTCCTACCTGCTTTTAAAAGTTTGATTAGGAATACAGCCTTCACAAGGATGACACATTGTATATTAACTGAATACTATAGTGCATGTGTGATTTTAGTAGTATAGCTGTATTATTTGCTGTGGGGCATTGGGGGAAGCATGTCTGTCCAAATACGGAGTAAAGATAAAGTAGATGCAGCCGTTTGCCTCTTTTGATTGGCTGCCTCCTACACGTTGTGGGAGAAACCAGGAAGAGAAACAACTACACATTGTTACATGGAGCAGGGCAATAACATGAAGAGTCCGAGTCAGTGCAGACAGAGGACCATCTCGTTGCAAAGTCCCCTGGGAAAGATCCAAGTCAGCGGATGTGAAAATGGTGTGCACACCATCCAGATCCTAATGGATGTTCCACCTGCAGaaagGAGTGGTGACACCTCCCTAAGCTGTGTGGTCACTGTTAGCAATGGCCAAGAGGAAATGGGCCCAGAGTTGCAGCACTGCGTGGAATGGCTTCGGGCCTACTTCAGCGAGCCGTGGACCGTGGGGAGGCTCCCACTCCCAGTCTTTCATCACCCCACCCTGCATGGAGATTCCTTCACCAGCCGGGTTCTGCAGACTCTTGTGCGGGACGTGAAGGTGGGAGAGACGGTGTCGTATAAGCGGCTGGCTGAGATGGCAGGAAACCCCAGGGCCGTGAGAGCTGTGGGAGGGGCCATGAGGAGGAACCCGGTGCCTCTTCTCATCCCCTGCCACCGCGTCATCTCCAGCGGTGGTCAGAGTGGGATGTACATGGGCGGCAAAGGTAACCATCTCAAACAATGGCTGCTCACCCACGAGAAGGTCAAAGAGGAAGACTGAAGCACAATGATGTGATATAGTAAGACCAGTGTGGGATTATATTTTACAAAGCAGTGTTGACGTGTTATCCAGACAACTTCTATAACCATTCTGAAACCACTGTACTTCCTGAAGCAGTTAAGAGCTTTCTTTGTGTTATATGAGTGAACACCAACTATTATTTTTGACTGTTTATCACAGTAAGCAAGCTAACTCCTTTATCCTGCTTTGTGAAATACAACAGTAAGCAAGATGCGATGTCAACAATGAACCACAGCTGAGGAAACCTGTACATAGTTGCGTGACATGTGCACATGGGGCGGCTTCACAGTTGAAATGTGTGTCAGCTGTGCCTTATTTTGAAAATGCTGTCTATAACCCAAGGGAGAGCTTTCATGTTTTGATTTTATATCTGCTTCTGTTCTGCTTTGTCCGACTGTCCAGTCTGTGTTCTAATTGAATTCATGTGAAAGAATAAAGTGGAGGTTTAAGGGAGTGGCGGTGTTAGGGGGGTTAGTGTAGAGGCCTCAG

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0006281 DNA repair biological_process
GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity molecular_function

KEGG:

id description
K00567 ogt, MGMT; methylated-DNA-[protein]-cysteine S-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91792 lncRNA downstream 1059 74358151 ~ 74358681 (-) True G83163
TU91794 lncRNA downstream 2921 74356303 ~ 74356819 (-) True G83165
TU91801 lncRNA downstream 9237 74350293 ~ 74350503 (-) True G83172
TU91770 lncRNA downstream 45030 74312503 ~ 74314710 (-) True G83143
TU91760 lncRNA downstream 62006 74297030 ~ 74297734 (-) True G83134
TU91826 lncRNA upstream 12860 74391013 ~ 74391300 (-) True G83197
TU91846 lncRNA upstream 37496 74415649 ~ 74415881 (-) True G83217
TU91847 lncRNA upstream 38086 74416239 ~ 74416460 (-) True G83218
TU91907 lncRNA upstream 85660 74463813 ~ 74464105 (-) True G83278
TU91917 lncRNA upstream 93833 74471986 ~ 74472260 (-) True G83288
XM_021611333.2 mRNA downstream 125623 74229248 ~ 74234117 (-) True LOC110529206
NM_001160549.1 mRNA downstream 170059 74183813 ~ 74189681 (-) True smndc1
XR_002474341.2 mRNA downstream 273769 74082939 ~ 74085971 (-) False LOC110529148
NM_001124280.1 mRNA upstream 99018 74477171 ~ 74478278 (-) False gnrh3
XM_021611412.2 mRNA upstream 101785 74479938 ~ 74497600 (-) False LOC110529277
XM_021611396.2 mRNA upstream 101785 74479938 ~ 74531625 (-) False LOC110529277
XM_021611404.2 mRNA upstream 101785 74479938 ~ 74531625 (-) False LOC110529277
XM_021611433.2 mRNA upstream 331177 74709330 ~ 74728846 (-) True LOC110529307
TU89447 other downstream 2107822 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2148651 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 2615931 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 2889281 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 2973217 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 194294 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 594059 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1150190 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1955315 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1989140 76367293 ~ 76399956 (-) True ccser2a

Expression Profile