RNA id: NM_001124280.1


Basic Information

Item Value
RNA id NM_001124280.1
length 1108
RNA type mRNA
GC content 0.37
exon number 1
gene id gnrh3
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74477119 ~ 74478278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAAGGAATACACAGAACGGAGAAAGTATGTGATTCATATAAGTATATTTCAAATTGTTAACTAATGTGCATTTGTGGGTAGttcatatatactgtacaatgtgcATATTCAATAGGTAATCATTGCAAAATGATCGCAAACTTCTGCTTGAtgtaaaaatacattatttttgaCGATCACATTTAGCTGATATTTGACTAGCTTTCTTTCCAGCTCCCATGGATCTTAGCAACAGAACGGTCGTGCAGGTGGTGGTGTTGGCGTTGGTAGCGCAGGTCACGCTCTCTCAGCACTGGTCGTATGGCTGGCTACCTGGAGGGAAGAGAAGTGTTGGGGAGCTGGAGGCCACCATCAAGGCAAGTACTATTTACCTCTACCTGTAACTACTGTTACAGCTATGTCTACATgtgcatactgtacatgtaattGTCCTTTAAGGAAATCTACTGTGTCTTGAAAACCTGTGAACATTTAAATGTGGCATTTATCGGGATAGTTTGTGTGGAATATTAGTTCAAGAGGCCTTTTCAAGAGTATATTGGCAATGTATATTAATTAAACTCTGTAAGTGTGTTGCATAAATGGTATATGGGTAATAGCCTTACAAATTCCTCCTACATATTGCTATCCAGATGATGGACACAGGAGGTGTAGTGGTTCTTCCTGAGGAGACAAGTGCACATGTCTCAGAGAGACTGAGACCATATGATGTAGTAAGTAGTCATATTAATTTATTAGGTTAgatattgtattcattgtattcctAATGGCCAATTATTTATGTTTCATCTGAAGATGCTACATTTTCTCCTGGTAAAATATGTTGTAAACAATATACCAAAGTATCTGAAATAAATGTTTAGATAAGAGTAATGGCTGACAAATGGAAATCTTCCCTGAATTTAGCGAAGTGATACCTATAAATGTAGGGAGACAATGTTGCTCATGTCTGACACATCAGTATAATATACAACATAAAGTAGACTTCTGAAGTTAACGCTTTGATTTCCCTAGATATTGAAGAAATGGATGCCCCATAAATAAACAACTGAGACCATTATTCACAAAAGAAGCGAGAAGACAACATCAAGCAGACATACAGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91917 lncRNA downstream 4911 74471986 ~ 74472260 (-) True G83288
TU91907 lncRNA downstream 13066 74463813 ~ 74464105 (-) True G83278
TU91847 lncRNA downstream 60711 74416239 ~ 74416460 (-) True G83218
TU91846 lncRNA downstream 61290 74415649 ~ 74415881 (-) True G83217
TU91826 lncRNA downstream 85871 74391013 ~ 74391300 (-) True G83197
TU91961 lncRNA upstream 2149 74480427 ~ 74481104 (-) False LOC110529277
TU91966 lncRNA upstream 4225 74482503 ~ 74482803 (-) True G83336
TU91967 lncRNA upstream 4762 74483040 ~ 74483326 (-) True G83337
TU91968 lncRNA upstream 6458 74484736 ~ 74484935 (-) True G83338
TU91969 lncRNA upstream 10730 74489008 ~ 74489236 (-) True G83339
XM_021611387.2 mRNA downstream 99017 74348790 ~ 74378154 (-) False mgmt
XM_021611379.2 mRNA downstream 99018 74359740 ~ 74378153 (-) True mgmt
XM_021611333.2 mRNA downstream 243054 74229248 ~ 74234117 (-) True LOC110529206
NM_001160549.1 mRNA downstream 287490 74183813 ~ 74189681 (-) True smndc1
XR_002474341.2 mRNA downstream 391200 74082939 ~ 74085971 (-) False LOC110529148
XM_021611412.2 mRNA upstream 1660 74479938 ~ 74497600 (-) False LOC110529277
XM_021611396.2 mRNA upstream 1660 74479938 ~ 74531625 (-) False LOC110529277
XM_021611404.2 mRNA upstream 1660 74479938 ~ 74531625 (-) False LOC110529277
XM_021611433.2 mRNA upstream 231052 74709330 ~ 74728846 (-) True LOC110529307
XM_021611491.2 mRNA upstream 493494 74971772 ~ 74975108 (-) False fank1
TU89447 other downstream 2225253 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2266082 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 2733362 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 3006712 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 3090648 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 94169 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 493934 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 1050065 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1855190 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1889015 76367293 ~ 76399956 (-) True ccser2a

Expression Profile