RNA id: XM_021611396.2


Basic Information

Item Value
RNA id XM_021611396.2
length 4647
RNA type mRNA
GC content 0.43
exon number 21
gene id LOC110529277
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74479938 ~ 74531625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCACCCCGGGGAGGGACTAGTTCGCTCGTATTTCTAATGTAGGGACTGTCATAAGGCTTCTCTATCCGCCGAATAGCAAGAGAAATCCTCTCCTAAGAGGTTTACGTCATGGAAGATAGGCTACATTTCCATATGCACTTCTCATAAATACCAGTGAATTAAAACATTAACAGAGCTTTTTTTTCCTCAAACACGAAACCATATCATTCCTCAAGACGCCGCGAGATCACATTTCCGACATCTACGGTGGTATGCATTTATGTAGGTCACTGAACTCGAGCCTACTTTACTCTGTGGCATGACCTAAAACCCTGAAGTCCCCTGAAACCCAGCTACTGGACCATAGCTTACAGGAATAGTGTGTCCTGATCACATCGACTACTCTCCCACCAGACCCTGTACCTCCCGAGACAATGTGAATGTGGACTGGGTTGTGGGTACTGAATCCCAAGGGGCCAGTCAGGAAGAGAACCAGACCTTCTGGCTGCTATGGACTATTGGATTAACTCCTACTGAATCTGGTCAGCTCTGCTTTTAAACTTCACAATGGTGTTGTTTCTGATTGCAACTACAATAACCTTGAATAACTCCTCTCAAGTGAACCAGACTTCAGAAAACCCCACCTCCCAGGGTGCCCATGTCCTTCCCCCTACGctgatctctcttcttctcatcatcatcattctcCTGATTGTATACTTCCTAAGGTTTAGAAACCACAGGAAGGCTCTTATCTCTCAGAAGACTCCAAATGGCTTCTTGGAAGATCAAGGAGAGCAGACAGTGGTCCTCCTCCCACgatccccctctccatccaaGAGGTACTTCCCCATCCCCCTGGACTCGCTGGAGGACGAGTTCCGAATACGCTCGGCAGACGACTGCAAGCTTTTTAGAGAGGAGTTCAATTCACTGACCTGTGGCTACCACCATGGCTCCTTTGAGGAGGCTAGCAGGGAGATCAACAGGGACAAGAACAGATATCCAAACATCCTACCATATGACCATTCCAGAGTATTGTTAACGCAAATAGATGGGCATTCTTGTACGGACTACATAAATGCCTCATACATAGATGGTTATAAAGAGAAGAACAAATTAATTGCAGCTCAAGGCCCAATGCACAACACAGTGGCTGACTTCTGGCGGATGATTTGGGAACAGAAGACTGCTACTATAGTGATGCTCACTAAcctgaaagagagaaaagagGACAAGTGTTACCAGTACTGGCCAGACCAGGGCTGTTGGATGTATGGGAGTGTGAGGGTGGCAGTGGAGgactttactgtactggtggacTACACCATGCGCAAGTTCTGTGTACAATATCAGGGGAATGATGGCCCAAGGGCCCCCCGCTTAGTCACCCAGCTCCACTTCACCAGCTGGCCAGACTTTGGGGTGCCCTTCTCCCCTATCGGCATGCTCAAGTTCCTCAAGAAGGTGAAGACAGTCAACCCGTCCTATGCAGGACCCATCGTAGTGCACTGCAGTGCTGgggtaggtaggactgggacgTTCATCGTCATAGACGGCATGATTGACATGATGCATGTAGAGAAGAGGCTGGATGTCTTTGGGTTTGTGACCAGAATACGGGAGCAGCGCTCTCAGCTCGTCCAGACCGATATGCAGTACTCGTTCATCTACCACGCTCTGCTGGAGTATTATATGTATGGGGACACAGAGCTGGATGTGTCCTCTCTGGAAGGCCACCTGCAGAAACTCCACAACACCAGAACACCCCTTGACAAGCTGGGCCTAGAGGAAGAGTTCAGGAAACTGACCAATGTACGCATAATGAAGGAGAACATGAGGACTGGAAACCTTCCTGCAAACATGAAGAAGAACCGTGTGCTTCAGATTATTCCATATGACTTCAACCGGGTTATATTATCAATGAAAAGGGGCCAAGAGTTCACGGACTACATCAATGCATCATTTATTGATGGATACAGACAGAAGGACTACTTCATCGCTACCCAGGGTCCCCAGTCTCACACGGTGGAGGATTTTTGGAGGATGGTGTGGGAGTACAGGTGTCACTCTATCGTCATGCTCACTGAACTCAAGGAGAGGGAACAGGACAAGTGTTTCCAGTACTGGCCAGCAGAGGGCACTGTGACATTTGGAGACTACACTTTGGAGCTGAAGGGTGATGCACTATGTGACACTTTCACTCTGAAGGACATGGTGCTCACATATGGACCAGAAAAGCAGTCACGGCACGTCAGGCACTTTCATTTCCACGGCTGGCCTGAGATCGGAATACCGGCAGAGGGAAAGGGAATGATCGACATCATTGCTTCAGTGCAGAGACAGCAACAACAGTCTGGAAACCACCCTATTATAGTACACTGCAGTGCTGGTGCGGGTCGGACCGGTACATTCATCGCCCTGAGTAACATTCTGGAGCGGGTGAAAGCAGAGGGCCTACTGGACGTGTTTCAGACTGTCAAGAGCTTACGCATGAAGAGACCACACATGGTTCAGACTGTGGAACAATATGACTTCTGCTACAGAGTGGTTCAAGATTTTGTTGACATTTTCTCAGACTATGCCAATTTTAAATGACAATATCTGCTATATACCCATGTGTATTTCCACGTAACATATGCAATTTTGTCAGAACCTTCTTTTCTAAGCTCTTTCAAGCTCTTTTTACACTTTGCACTTACCCACAATACTTAAACATATTGTACCATATTTTattatacaggtaactgccaaaataaggaaatgagggatacaaagtatattgaaagcaggtgcatccacacaggtgtggttactgagttaattaagcaattcacATCCCATTTGTTTAGGGTCATGTATATTCatccattattttggctaccatggctatgcccacgataggatgacaatgcccccatccacagggcatgagtggtcactgaatggtttgatgagcataaaAACAATGTAAGCCATATGctatggccgtctcagtcaccagatctcaacccaattgaacttATGTGAGATTCTAGAGCGgcacctgagacagcgttttccaccaccatcaacaaaacaccaaattatggaatttcttgtggaagaatggtgtcgttccagacacttgtagaatctatgccaaggtgcattgaagctgttctggctcgtggtgcccaacaccctattaagacactttatgttggtgcttcctttattttggcagttacctgtatatgttTGCTTATCTGTCTGTTTGTTAAAAAGAGCCCAAATGAAAATGGATTATTATCTCTATTTAGTCACGGACGTTTCAACTAGCTTTGTCTCCTCAGCATTTGTATGTCAATTGTTTTGAATTGAAAACGTAAGACCAAAACCGGTGTGAAGGGTTTAATTGAATAGGTTCTCGGACTCAAGACAATACTGAAAAGTATGTTATTATGTACATACTGTGTGTATTAATTAAGTTATGCATATAATCTTTTTCTATTTATATAATGTAGAATTTTATGTACATTTTGAGTTTTACTGATAGTCTATGTTGAAAAAATGACCATGAGATTGCCTTTCGTTgcctgtggtctgtactgtagacATGGCACATACTGTAGAACTCCTGCCGTTGTAAAAATACACAACCTGTCATGAGAGTTTGTGACAAGTGACTTAACAAATTAACATTCAGTTTTTGGTGTGTATGTCGTCTGTTTCATCGTAACAGTCTACTGAGTATCCAATGGAAAACACTCCATTTGGGCAACTTGCCATCTGTTTCAAACAGCAATTTTGATCTGACCTCACTAACAAATGGCTGTTCATATGTACACGGTTGTAAGAACTTTtgtacaacttttttttttaactatgtTGGACCTTCCATTTCAGCATTTGCATGTTTGAATGAAACAGTACCATACAAAGATTAGAACAAATTTCTGATCAAGTTCAAATTGTCCCCAAGTGACTTCAACTTCAATATACATAGCTAAGGCAGCAGATGGTTTAATGTTTCTCAAGACTAACCTAAAAAGGAAGAAGATTTCAATAAAATGAGTTGATTTTCATGATATCCTTATAGTGTATAGAACATGATTGGGATTAAAGCAAATGATTATAATGCTCATATACCCCCCAAAATGTGTATTGAATGTATAGAGTTCTCAATTAGAAAAGTGTCATTTAGAGCCAGGCAGCAATTTTCCGCTTGGTAAGTATTTATAGCCACAGTGCTCTCATACCACTAAATAACTGGGTTATTGATAATAGTAATTGATTCATGGAAGTTTCAGGAAGATATTTTATTGAATTTCATTGTGCTGTAGTTTACTGTGAAATCTATATTTTAGCAATGATCATAAATAAATAGAATTTAAATTCAAATTACCTGGTTACCCAGTTATTAAGTGTTAAGGCACTCCACAGGGCTATCCTTTTCATGCCAAAGGTACATTTATGGATTCATAGCCTGTTAGGTAAAGATACAAGTGTAAGGATTATGTCTTcttacagaacatttagaatCAGTCTTGTGTACAGAGTATGAAATTGAGCCATAATGTAGCGCTCAAGCATCTTGTTCCTGTATATCTCGTCATAAGTCTGTATGAAGTTAAAATTTCATTTGTAAAATCTGTCCGCAATAAATGCATTGAAAATAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91962 lncRNA downstream 1664 74477119 ~ 74478274 (-) True gnrh3
TU91917 lncRNA downstream 7678 74471986 ~ 74472260 (-) True G83288
TU91907 lncRNA downstream 15833 74463813 ~ 74464105 (-) True G83278
TU91847 lncRNA downstream 63478 74416239 ~ 74416460 (-) True G83218
TU91846 lncRNA downstream 64057 74415649 ~ 74415881 (-) True G83217
TU92058 lncRNA upstream 39221 74570846 ~ 74571128 (-) True G83427
TU92059 lncRNA upstream 39591 74571216 ~ 74571531 (-) True G83428
TU92064 lncRNA upstream 43527 74575152 ~ 74575354 (-) True G83433
TU92099 lncRNA upstream 66351 74597976 ~ 74598234 (-) True G83468
TU92108 lncRNA upstream 70258 74601883 ~ 74602105 (-) True G83477
NM_001124280.1 mRNA downstream 1660 74477171 ~ 74478278 (-) False gnrh3
XM_021611387.2 mRNA downstream 101784 74348790 ~ 74378154 (-) False mgmt
XM_021611379.2 mRNA downstream 101785 74359740 ~ 74378153 (-) True mgmt
XM_021611333.2 mRNA downstream 245821 74229248 ~ 74234117 (-) True LOC110529206
NM_001160549.1 mRNA downstream 290257 74183813 ~ 74189681 (-) True smndc1
XM_021611433.2 mRNA upstream 177705 74709330 ~ 74728846 (-) True LOC110529307
XM_021611491.2 mRNA upstream 440147 74971772 ~ 74975108 (-) False fank1
XM_036985291.1 mRNA upstream 450631 74982256 ~ 74996768 (-) False edrf1
XM_036985292.1 mRNA upstream 450631 74982256 ~ 74996768 (-) False edrf1
XM_036985296.1 mRNA upstream 450631 74982256 ~ 74996768 (-) False edrf1
TU89447 other downstream 2228020 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2268849 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 2736129 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 3009479 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 3093415 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 40822 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 440587 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 996718 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1801843 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1835668 76367293 ~ 76399956 (-) True ccser2a

Expression Profile