RNA id: TU91965


Basic Information

Item Value
RNA id TU91965
length 1744
lncRNA type sense_over
GC content 0.53
exon number 2
gene id LOC110529277
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74479938 ~ 74531625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCTCTATCCGCCGAATAGCAAGAGAAATCCTCTCCTAAGAGGTTTACGTCATGGAAGATAGGCTACATTTCCATATGCACTTCTCATAAATACCAGTGAATTAAAACATTAACAGAGCTTTTTTTTCCTCAAACACGAAACCATATCATTCCTCAAGACGCCGCGAGATCACATTTCCGACATCTACGGTGGTATGCATTTATGTAGGTCACTGAACTCGAGCCTACTTTACTCTGTGGCATGACCTAAAACCCTGAAGTCCCCTGAAACCCAGCTACTGGACCATAGCTTACAGGAATAGTGTGTCCTGATCACATCGACTACTCTCCCACCAGACCCTGTACCTCCCGAGACAATGTGAATGTGGACTGGGTTGTGGGTACTGAATCCCAAGGGGCCAGTCAGGAAGAGAACCAGACCTTCTGGCTGCTATGGACTATTGGATTAACTCCTACTGAATCTGGTCAGCTCTGCTTTTAAACTGTGAGTAACCCCTGAGTCGATTTCATTTCAACTCAGGCCATTTAGGACATCAATCTAAATTCATTATTTTAATGTAAAGGGACCCTTGTTTTCAATTAGGATTTCAATTCAATTCCTGAATTGACTTTGTTGACCCTGACCATGCTCCCGACATAATGATTAGTGATGTATAGGAGATTACAAAAATAAGATTGTCACAGCTTCAATATTAATGCATATTATGCTGTGATGACTTGTATGTATGGATGCTTAGCGCATTTTGGCTGAAAACAAAGCCCATAACCGAGAGGCTACAGTATCATGCTTCTGAACAGACAAATATTCAACCCTCCTTTataccacaacaacagaaataGAACCGTTCTTACAACAATGGATTTCATTGAGTTATGATCTGGTGATCCAGATTTTTATCAGTAGCATGGCCTGCTACTTGCCAGTGAAGCCTCCCTTCGCTTTAGTACTGTTGCTGTTTGTCTAATAGGGAAGTTTCTCATTATAGCTGCTAATACATAGCTTCTGAagcctctcatctctcctctcatcctcccctcttCTTTTTACTCGCTCCACTGACATGTATTTGTTCTCCAGGTCCAGTGTCTGCTCTAGCAGACAGCCATGCTTCTGTGGTTGCTCTCCACtgtctttgttctctctctccttgtaaaaaaaaaactaacattttGTGTGTCATCCATCTTTAATCCCTGAAGCAAAGATGCTGCTTTTAGGTTTTATTGATTCATGAAGAAACCTGAACTTCAATGGATGTGGGTTGGGATGTCACATAAAGATGAATGTTTTCTCTTTGTTTCCTAAGACAAAGGGTACACTAGTCTAGCCTGTCTGATGGAATCTCTTTGAAATTGGAGATAAGGAAAGATTTCAAGGGCAGTAAATGGATTGCTATATTTTGGGTGCCTTTTTTATGCTTGGATCAAATGTTGCAATCCCTGTATGCTTGTATCACCATGTCCATTGGTAAagaacatacacagaacataTTTATATGCCTGTGAGTACAGTATCCATTGTCCTCTGACATTGGAACctgtaaaaatatgttttaataatTTAAAAATCATGATGTTTTTAATCTAAGGTTCACTCATCACTATGTGCTCTTCAGCTGGGTTCATTTGGATTCATGTCAGGCCGTAAACCATATTATACCTATAGCCACTTCATGTCAGGGTGGATATTGTGGTCACAGTAATGTGCAATTCAGAATTCAATGCATCCTGTTTGTCAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91971 lncRNA downstream 14581 74490086 ~ 74490294 (-) True G83341
TU91970 lncRNA downstream 15281 74489363 ~ 74489594 (-) True G83340
TU91969 lncRNA downstream 15639 74489008 ~ 74489236 (-) True G83339
TU91968 lncRNA downstream 19940 74484736 ~ 74484935 (-) True G83338
TU91967 lncRNA downstream 21549 74483040 ~ 74483326 (-) True G83337
TU92058 lncRNA upstream 39278 74570846 ~ 74571128 (-) True G83427
TU92059 lncRNA upstream 39648 74571216 ~ 74571531 (-) True G83428
TU92064 lncRNA upstream 43584 74575152 ~ 74575354 (-) True G83433
TU92099 lncRNA upstream 66408 74597976 ~ 74598234 (-) True G83468
TU92108 lncRNA upstream 70315 74601883 ~ 74602105 (-) True G83477
XM_021611412.2 mRNA downstream 7275 74479938 ~ 74497600 (-) False LOC110529277
NM_001124280.1 mRNA downstream 26597 74477171 ~ 74478278 (-) False gnrh3
XM_021611387.2 mRNA downstream 126721 74348790 ~ 74378154 (-) False mgmt
XM_021611379.2 mRNA downstream 126722 74359740 ~ 74378153 (-) True mgmt
XM_021611333.2 mRNA downstream 270758 74229248 ~ 74234117 (-) True LOC110529206
XM_021611433.2 mRNA upstream 177762 74709330 ~ 74728846 (-) True LOC110529307
XM_021611491.2 mRNA upstream 440204 74971772 ~ 74975108 (-) False fank1
XM_036985291.1 mRNA upstream 450688 74982256 ~ 74996768 (-) False edrf1
XM_036985292.1 mRNA upstream 450688 74982256 ~ 74996768 (-) False edrf1
XM_036985296.1 mRNA upstream 450688 74982256 ~ 74996768 (-) False edrf1
TU89447 other downstream 2252957 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2293786 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 2761066 71743045 ~ 71743809 (-) True G79904
TU88097 other downstream 3034416 71469682 ~ 71470459 (-) True G79700
TU88009 other downstream 3118352 71376285 ~ 71386523 (-) True G79616
TU92060 other upstream 40879 74572447 ~ 74572789 (-) True G83429
TU92810 other upstream 440644 74972212 ~ 74973321 (-) True fank1
TU93438 other upstream 996775 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1801900 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1835725 76367293 ~ 76399956 (-) True ccser2a

Expression Profile