RNA id: XM_036985302.1


Basic Information

Item Value
RNA id XM_036985302.1
length 4638
RNA type mRNA
GC content 0.51
exon number 25
gene id edrf1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74982256 ~ 74996768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCctcatttatttttattgttggaGCGGCGGCTAGAatatctggtcaatataatggataatctTTGTCTGCACTCAAATGTGTGTTCTGTCAACAGCAGCAAACAGAATAACGCAGCAAGTGGTGTTGATACAGTCTGGATGACTGCAGAACGGAGATAGTGTTAACCATCTTGCCAATTTTATCGTTTGGCTCAGATGAACCAATATGTCGCTTGGTGTGTGAAGCtataacgttaggtagctagcaagctaggtaTCTAATCAGCTGGTGGTAGATTTAGCAACTAcagtggctagctagccagcactTGCAATTCATTTAGGTTATCACTGTGtttttgttgtttacattttcaggaagctagttagttagctaaggACGGCTACCCCTTGGGCAGCATTCGTTTTTGTGACAAGTAGCTAGCTTGAATTGCAGACAGAAAATGAGTTCAGCACCAGGGAACCGAGAGGATTGCGTCCCTCCAGACCGTGGAAGTGAAGACGTAACGTTAGATGACAGTGGGGGTGATATTGCCAGTACTGCTGGCAGACAGGAGTTGGAGATGTGCCTTGGCAACAACGAAATAAAGAGCCGTGCGGTGGTGAAGTATTCTGCTGCCCCTCCACCCACCACCTATGCACTACTGCAGGAGAAGACAGACCTGAAGCTGCCTCCTGCCAACTGGCTCCGAGAGAGTCCCCAACTTGGGCCTGCAGGGTCCACTGTACTAGGGTCCAGCAGCAAGAGCAAGCCTTTCTCCAGTTTTGGGATGGCCTATGACTTCATTGATTCTATTGGGGATGATGTTGATGTGGTGTCAGACTCTGAGAACATCAAGAAGCTGTTGAAGATCCCCTACAGTAAGTCCCATGTCAGTATGGCCGTCCACCGCGTGGGAAGGACTCTCCTCCTTGATGAACTGGACATTCAGGAGCTCTTCATGAGGTCCTCTCAGACAGGAGATTGGACATGGCTGAAGGAGTTTTACCAGAGACTAATAGATCAAAAGTGGCAGAGAAAAAAGAAGAGCAAGGAACACTGGTACCAAAAAGCAATCCTATCCAAATTCCTCTACTACAGTATTAATGGTGATGGAGCCGCAGAGCCTGTCCCTGACTCAGACAACACTGATGAGGGGTGTGGGGCGGAGGAGTTTGGTCCCTCCTGGCCCGCTCCCTTCACTAGTACCGCTTCAGACTCTGAGGAGTCTGCAGCACACAAAGAGGAAGGGGTTCCCATGGACAGCAAGTATGCATTGGGACAAGTGGCTTCCAAAGAGCAGAACCTTACCACACTGTTCAACGAGGGGGAGAACAGTCAGGGGTTGAGGAATGACTTTGTGAGGAACATCTTGTGGACATTTGAGGACATCCACATGCTGGTGGGGTCCAACATGCCTATCTTTGGAGGAGGGCGCTACCCAGCTGTCAGCCTGCGGCTCAGGGATAACAACAAGCCAATCAACATTCTCACGGGTATTGACTACTGGCTGGACAATCTGATGTGCAATGTTCCAGAGCTCGTCATGTGCTTTCATGTCAATGGAATCGTCCAGAAATATGAGATGATCAAAACGGAAGACATCCCTGATCTGGAGAACTCCACCTTCTCAACCAGGGTTGTGAAAGACATCGCTCAGAACATTCTGTCCTTCCTCAAATCTAACTGCACCAAAGAGGGCCATACCTATTGGCTCTTCAAAGCTAGTGGAAGTGACATCGTAAAGCTGTATGACCTCACCACTCTCTGTGAGGAAGCAGCAGAGGAGAAATGCCAGAACCCTTTCACTCTGCCAGTGGCTGTGCTCCTTTACAAAGTGGCTAGCAACATGATGCTGAAGAAGAGCCAGAACAGGAAGCACTATGGAACAATCAGAACGTTGCTCCTCAACTGTGTGAAGCTCCTGGACCAGGACAGGCACCCACAGATCATAGCATCGGCCCACTATATGCTGGCAGAGCTGTTCCAGTTGGACGAGCCTCCAGAGGAGGGAGCTGGGGGGGAGTCGCTGCGGGCCGGGGGCTCAGAGGACAGCTACAGTGACGAGGATGATGAAGAGGATCCAGAAGACCTACCAGAGGACAGTGATGAGAACGGCTCCTTTAGTACCACGTTGGACTCACAGGATGATAGCAAAGCTGTAGCTATTATCAAATCAGTGGGGGAGCTGTCTGTTCCAGAGAAGTACAAGTCCACTCACCAGATCAGGCCAATCTACGCATTTCCCGTCTCTCAAGACAAGGAGGAAAGATGTCGGCATGTCCTCAGCTACGTCTTAAAGGGCCTAAAAGCAGTGGACGGCAGCATTAAGAAGGAGAGTGACCTCCCAGCTGCTGACCCAAACACCCCCATCCCCCTGAAGTACGAGGATGGGAGTAAGGCCGTGGAGAAAGGGATCGCACTCCTCCTGGACAGAGCTGGTCCCTTCCAGGAGGACCGGAAGCATCCGACCCGGTCAGGGATGATCCCAGGGTCCTGGCAGCACCGTATGAAGCTGCAGCTCTTCTTCAAGGCGTCCAAGGCCTACTACGTACTGTCAGACGCTGCCACTAATCTGCTCAAGTATGGCCGGGCCCTGCGCTACATCAAACTGGCCCTGCAGTGCCACGatGCCTACTGTTCAGTGAGCAGTACCCTGCACTCGCGGGTGCTGCTGTTCCACAGccagtgtctgtctctgtgtggggACATCCAGCTGATGCTTGCCCAGAATGCCAGTAACCGTGCTGCCTACCTGGAGGAGTACAGCTACCAGACCAGGGAGGACCAGGAGGTGCTGCACAGCCTGCACAGAGAGAGTAGCTGCCAGGCCTTTAACATGGCCAGTGACCTGGCCACGGACCCAGAGTACCAGCTGTTTGTGAGCAGTAAGTGTTATGAGGCGGCCTACGAGCTGCTGACCTCCGGGGTGGTGAAAGAGCATGGTCCTGAACAGCTAGCCCAGGTACTGAAGAGACTGGGCAACATTCGCAATGAGATAGGAGTCTTCTACATGAACCAGGCTGCTGCCATGCAGACCGAGAAGGAAGTGAAGAAGTCTGTATCTATAGCTGAACAGGAGATATGGAAGAAGAGTTTTTCGTGCTTTGAGAAGGGCATGAAGGACTTTGAGGCCATTGAGGACAGCACCAACACCTCCCTGCTGCTGTGCAACACAGGCAGGCTGATGAGGATCTGTGCCCAGGCCCACTGTGCTACATCTGCAGACCTGAGCAGAGGAGAGTTCTCCCCAGAGGAGTCTCTCTATTACAATAAGgcTATAGACTACTACCTCAGGGCTATGCGTTCCCTGGCCACCAGAGGGAACCACCCTGCAGTGTGGGACTCAGTCAACTGGGAGCTGTCCACTACCTACTTCACCCTGGCCACTCTGCTGCAGGACTACGCCCCTCTGTCCAGGAAGGCTCAGGAACAGATTGAGCGGGAGGTGACGGAGGCCATGCTGAAGTCTCTAAAGTACTGTGACCTGCAGACCGAGTCGGCACGCCAGCCCCTCTACCAGTACAGAGCTGCCACCATCCACCACCGCCTGGCCTCCATGTACCACAGCTGCTTCCGCAACCAGGTGGGGGATGAGCACCTGAGGAAGCAGCACAGGAGCCTGGCAGAGCTGCACTACAGCAAGGCTGTCCTCCTGTTCCTCAGCCTGAAGGACGCACCCTGCGAGCTGCTCCGCACCCTTCTGGAGAGGGTGGCCTTCGCCGAGTTCACCATGGCAGGTCAGAGCAGCAGTGGGGCCAAGCTGAAGACCCTGACAGGAGCCCTGGATGTACTGACAGACACTCGCCATGCCTTCCTGCTTATCCACAAAGAGCTGCTAGAGGACTACACAGAGacAGACTGCCCAGAGTTGACAAGACACCTTGACAGTGGTGCAGATGGCACCACCTCCTCAGGGCTGAACACCATAGAAGTGATGAAGTTGATTGGCGTCTTTGAGCCCAGTTTCTCCTTCCTGCTGCTGCAGCTGGTCAAACTGATGACGGCCATGAAGCGCAAACTAAGcaATAAGGACGAGGAGCTCCTGAAGACCTATAAGAATGTTTACTCCAAGATACTGCGTGCTGAAAAGACTGCTCCACTCCTCAGCCGCATTGAGCTCTTCCTCGACCTCCTGCAACAGCTGACCCCAAAGACAGGAAGTGGTGACCTTGGGGCATCGTCATGATGACAACCAAAATAACACCCGTACCAAGGTGTTCATTGCTCTACACCCTCTACACACCTACAATGTGAAAGCATCACCAGCTGTGCCTTACTTCCAGACTGCGCAATCCACAGTTTAGTCTCTGGTAGATAATTTATTTTACAATTGCAGTGCTTCACCTTTTCAATTGGCCTAGTTTTGTAAAGAGGATTGGAAAATtacctttttaaaatgtatattttctttGTTCTCGCTAAATGCGAGATGCATGCGCATGACTCAAACTTTGGAGTACCAGTATCTCAACGGGATTTGGTCTTATAAACCTGgaaaaaatgttttaaactgATAATGTGCAATAGCCTGCAGGTAATGTTGACTGCGAACTATCCATTCAGAGGATGATTTGTACTCGTTGCTATATGTTTgaatgtgtgtgcctgcatgtttGCCCTGACTTGAAATAAAGGTTTGAATGATATTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92782 lncRNA downstream 45856 74936200 ~ 74936400 (-) True G84102
TU92775 lncRNA downstream 55607 74926414 ~ 74926649 (-) True G84095
TU92774 lncRNA downstream 56068 74925949 ~ 74926188 (-) True G84094
TU92772 lncRNA downstream 61633 74920369 ~ 74920623 (-) True G84092
TU92767 lncRNA downstream 68550 74913462 ~ 74913706 (-) True G84087
TU92922 lncRNA upstream 109606 75106374 ~ 75107397 (-) True G84231
TU92855 lncRNA upstream 138242 75135010 ~ 75136619 (-) False LOC110529412
TU92854 lncRNA upstream 138324 75135092 ~ 75137383 (-) True LOC110529412
TU92931 lncRNA upstream 145735 75142503 ~ 75142712 (-) True G84240
TU92932 lncRNA upstream 146388 75143156 ~ 75143547 (-) True G84241
XM_021611491.2 mRNA downstream 7148 74971772 ~ 74975108 (-) False fank1
XM_021611433.2 mRNA downstream 253410 74709330 ~ 74728846 (-) True LOC110529307
XM_021611396.2 mRNA downstream 450631 74479938 ~ 74531625 (-) False LOC110529277
XM_021611404.2 mRNA downstream 450631 74479938 ~ 74531625 (-) False LOC110529277
XM_021611412.2 mRNA downstream 484656 74479938 ~ 74497600 (-) False LOC110529277
XM_021611511.2 mRNA upstream 115873 75112641 ~ 75133271 (-) False LOC110529369
XM_036985373.1 mRNA upstream 115873 75112641 ~ 75133272 (-) True LOC110529369
XM_036985375.1 mRNA upstream 138311 75135079 ~ 75147792 (-) False LOC110529412
XM_021611577.2 mRNA upstream 138311 75135079 ~ 75148790 (-) False LOC110529412
XM_021600288.2 mRNA upstream 348345 75345113 ~ 75348344 (-) True LOC110522123
TU92810 other downstream 8935 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 409467 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 2730338 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2771167 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 3238447 71743045 ~ 71743809 (-) True G79904
TU93438 other upstream 531575 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1336700 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1370525 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 1524317 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 1609914 76606682 ~ 76608354 (-) True G86132

Expression Profile