RNA id: XM_036985373.1


Basic Information

Item Value
RNA id XM_036985373.1
length 4153
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110529369
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75112641 ~ 75133272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatgaaacaaacGCAATGGTGGCTCcgggaatggagtgtaatgtaaTAATAGTCCGTTGTTCATAATGTCAGCAAAAACGGTGAAAATGAATGACTGTTTCATATTTTGACATTGGAGACTGCTGTGATCAAGCTTTTTAACTATTGGCAACGAAAGACGTATCTCATAGGCCAACAGGAGGAAAACAGACAAACTATCCAATCAGCTTGGCTGTTGGATCCAGGTGGTAAATTCTCCTGCTTCTCTCTGgagtgtatttttttgtattttccagCTTCCCCTACGCCGCCATTAAATACCAACAGAACGGTTGTTGGAAATGGGGATTAAAATGATTTAAAGCCCCGGAGAGACGGCAAAGGGACGGGGGGAGGGACGGGGGGGGTTGTTGTACAATTGCATAGGTCTCGGAGCACGGAAAGGTAAATATGAGGCTTCTGACCAAATAAAAGATTGACTTCGGGACATACGGATTGGGTTTCTTTGGGAAGGCTCGAGTGGATAGAACCGGGGACAAGCTCGAGAACGGTTTGGTTGTGCTTGAAAGAGGAGTGTCAACACAGGAAAAGCATCCTGCTTGCCTGTGTGATCTCCTTGAGTGGAGCTGTGGTGCTGAGCCCCTCCCAGCGGCAGCCTCTCCCAGCGTTGGAGCGACAATGACCGAGCTGGGTACCAAGTGGGCCTGTGAGTACTGCACGTTTGAGAACTGGCCCTCGGCCATCAAGTGCACCATGTGCCGCGCCCAGAGGCCCAGCGGGGGCGCCATCATCACTGAGGAGCCCTTCCGGAGCAGCCCCGGCCTGGATACCAGCCGCCAGTGGGAACCCCCAAGCCTGAGTAACAGCCCGCCCAAGGGAGGCTCTAGCCTCCTAATCTGCCCAGACTCCAGCGCCCGTCCCCGTGTCCGCATTGCAGACACCCCCGAGACCCCCTCCAGCAAGTGGTCATGCCACATTTGCACCTACCTAAATTGGCCCCGTGCCATCCGCTGCACCCAGTGTCTGTGCCAGCGACATCGGCAGGAGCAGCACCACCATGGACTGGCACAGCAGCCATGCAGCCCCACCGAGTCACCCCAGACCTCAGGCTCAGGATGCCGGACCGCACCCCCCTCTACCCCTACCGACCCCTGCGAGGAGTATAACGACCGCAACCGCCTCAACACCCGCGCCCAGCACTGGACCTGTGCCGCCTGCACTTATGCAAACTGGCCCAATGCGTGCAAATGTGTAGTGTGTGACCACCCTAGGCCCAATAGCCTGACAGAACCTATCGAACTGGCCTCTGAGCCAGAGAGCCTACCACCCTccatactcaatgagcaggacaGGGACAACAGGAGGGGGGGTTTGGGAGGGGGCGGCGGTGGAGTAGTGGGGTGCAGTGGCGGCCAGAGGAGGTCCCCACCCACCTCCAAGCGGGAGGCGGAGGTTAAAATGGACTTTCAGAGGATCGAACTGGCTTCGGGAGCCGGAGTGGGGAGCATAGAGGAGCAGCAGGTGGACTTTAAAAGGCTCAAACAGATAAAGAACAGGATGAGGAGAACTGACTGGTTGTTTCTCAATGCCTGTGCAGGTGTGGTAGAGGGGGACCTGGCTGCAGTAGAGGCCTATAAGTCATCAGGGGGGGACATCGCCAGGCAGCTGACGTCCGACGAGGTGCGTCTCCTCAACCGGTCATCGGCCTTCGACGACGGCTTCACCCTGGTACACCTGGCCATCCGCTTCCAGAGGCAGGACATGCTGGCAGTGCTCCTCACTGAGGTGTCCCAGCAGGCAGCTAAGTGTATCCCAGCCATGGTGTGCCCTGAGCTGACGGAGCAGATCCGTCGGGAGGTGGCTGCCTCCCTGCACCAGCGCAAGGGAGACTTCACCTGCTACTTTCTCACTGACCTGGTCACCTTCACCCTGCCAGCAGagctggAGGAGGAGTCTCCCATCATCAACTGGTCTATAGAGCTAGGCACACGGTTGGACAGCAGGCTGTATGCCCTGTGGAACCGCACGGCCGGGGACTGCCTGTTAGACTCAGTACTGCAGGCCACTTGGGGCATCTATGACAAGGACTCTGTCCTCCGCAAGACCCTTCACGACAGCCTGCATGACTGCTCCCACTGGTTCTATACACGCTGGAAGGAGTGGGAGTCGTGGTACTCCCAGAGCTTCGGCTTGCACTTCTCACTCAGAGAGGAACAGTGGCAGGAAGATTGGGCTTTCATTCTCTCACTGGCCAGccagcCTGGAGCCAGCCTGGAGCAGACTCATATTTTTGTTCTTGCACACATTCTTCGTAGACCAATCATCGTCTATGGAGTGAAGTATTACAAAAGTTTCCGTGGTGAAACACTTGGGTACACCCGTTTTCAAGgtGTGTACTTGCCCCTGTTGTGGGAGCAGAGTTTCTGTTGGAAGAGTCCCATTGCGCTGGGCTACACGCGTGGCCACTTCTCTGCACTGGTGGCCATGGAGAACGACGGCTTCGACAATCGGGGTGCAGGCGCCAACCTCAACACAGACGACGACGTCACCGTCACCTTCCTACCGCTGGTGGACAGCGAGAGAAAATTGCTCCACATCCACTTCCTCTCAGCACAGGAGatGGGTAATGAAGAGCAGCAGGAGAAGCTGCTGAGAGAGTGGTTGGACTGCTGCGTGACGGAGGGCGGAGTGCTGGTGGCCATGCAGAAGAGCTCCCGCAGGCGGAACCACCCCCTGGTCACACAGATGGTGGAGAAGTGGCTGGACGGCTACCGACAGATCCGCCCCTGCGCCTCGCTCTCCGACggcgaggaagaggaggaggaggatgagtgaCAAATCGGGTATAGGCGGGATCCCCAGAGGCAGGGGTCCAGCCTcgttttttttttccccccctttcCTGACACGGACAAACTGAAAGGGGAGGGAATCCTGAGCCTCACCGCACCCTGGCAGAGGACACATACGAATATCTTAGACTGACAGAAGAAATGGTCCACTGCTGCAAAAAGACCTGGGGATGATGGGAAATAAAGGATTATAGTATACTAATGCTATTTATCTTTATTGATTTTCTAATGTAAAATCTTTATCCAAAAGTGTAAATGCATGTGGTTGTTTAAAAAAAGAAGTATAAGGAAATATACCAGCATCGATTCAAACATCTTTCTGTTCATTATGGGCACTGACGAAGCACACTTACTGTTGTTTTTCCAGTTGAAATAGTTGGCTTGTTTTTTTTGATGGGCAGTGACTAAGCCAACATATCTTTGAGTCATGGGACCCAATGGAGAACTGGCTCGATTGTGTAATATGAACTTAATTCTTAATACTAAGCACTGCACATTTATTGAAAGACATTTCTATATGAATATAACTGCTTGAATAAAGGTAATTTATTAATCTTTGAAATGGCAGTTCAAAGTCACTAAGGTTTAGGAGACAGATCATACACATGGATGTTTAGTTTACCTTTTTTTCCGACTGGCTGAAATGAAATGTCTTGTTTTTAATTTAATCTCCAAACCAATTTTACATGTTTATTTGTTTGGGAGCTTTTGAGCTAAGGAGAGCTTTGATTCTCTGTATTTTTCTTtcatttattatttaaaaaatattttttaggcTGCACTAACATTTTTGCGGTGAGGAAAATAACAACCATCTGTAAAAGTTGACTTCAGTTCTCGTGTGATTCAGTATCTCATTTGAATGGTTGGTGATTTTTGGGAGGAGAGAGTAAGACATTCAAAGTCAACATTAAACCAGAAACGCACCAGTTTCTTGTCATATTCTCATATTATTCCTCCCTGTCAAGTTTAACCCATGGTACCTGTGTTTTATTTTTCTCTAATGTATATGTGAACATCTTGAATTGAGTTTAAGGTCTTTGTGAGAGACTGCACATAAACCAAAGTTGTAAAATCATGCTTTAGCAGTGAAGGAAGTTTCTGTTGGGTTTCCTTGCCGTTGAGTACTGTAACTTTTATTTTGGTGTATTACAATCTAGTTATACACATTTTGAGCATCACCTGTATGTTGCTTTGTATTTATGCAATAGTTGCAGATCTGACTATGATGGTTTGTGGATTTAGGTAAAAGCCTGACCTCGCTTTAGCGTGTGTGGCACGGACaggaaaaataaaggaaaacctttTTAATGTCCAATTA

Function

GO: NA

KEGG:

id description
K11862 ZRANB1, TRABID; ubiquitin thioesterase ZRANB1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92922 lncRNA downstream 5244 75106374 ~ 75107397 (-) True G84231
TU92782 lncRNA downstream 176241 74936200 ~ 74936400 (-) True G84102
TU92775 lncRNA downstream 185992 74926414 ~ 74926649 (-) True G84095
TU92774 lncRNA downstream 186453 74925949 ~ 74926188 (-) True G84094
TU92772 lncRNA downstream 192018 74920369 ~ 74920623 (-) True G84092
TU92855 lncRNA upstream 1738 75135010 ~ 75136619 (-) False LOC110529412
TU92854 lncRNA upstream 1820 75135092 ~ 75137383 (-) True LOC110529412
TU92931 lncRNA upstream 9231 75142503 ~ 75142712 (-) True G84240
TU92932 lncRNA upstream 9884 75143156 ~ 75143547 (-) True G84241
TU92935 lncRNA upstream 17922 75151194 ~ 75151400 (-) True G84244
XM_036985291.1 mRNA downstream 115873 74982256 ~ 74996768 (-) False edrf1
XM_036985292.1 mRNA downstream 115873 74982256 ~ 74996768 (-) False edrf1
XM_036985296.1 mRNA downstream 115873 74982256 ~ 74996768 (-) False edrf1
XM_036985302.1 mRNA downstream 115873 74982256 ~ 74996768 (-) True edrf1
XM_021611491.2 mRNA downstream 137533 74971772 ~ 74975108 (-) False fank1
XM_036985375.1 mRNA upstream 1807 75135079 ~ 75147792 (-) False LOC110529412
XM_021611577.2 mRNA upstream 1807 75135079 ~ 75148790 (-) False LOC110529412
XM_021600288.2 mRNA upstream 211841 75345113 ~ 75348344 (-) True LOC110522123
XM_021611670.2 mRNA upstream 358744 75492016 ~ 75494664 (-) True LOC110529482
XM_021611685.2 mRNA upstream 367438 75500710 ~ 75503281 (-) True LOC110529484
TU92810 other downstream 139320 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 539852 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 2860723 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2901552 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 3368832 71743045 ~ 71743809 (-) True G79904
TU93438 other upstream 395071 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1200196 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1234021 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 1387813 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 1473410 76606682 ~ 76608354 (-) True G86132

Expression Profile