RNA id: TU92854


Basic Information

Item Value
RNA id TU92854
length 2292
lncRNA type sense_over
GC content 0.42
exon number 1
gene id LOC110529412
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75135010 ~ 75148790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggacagCAGTGAGTATGAGAACCTTGTGAGCGAGGTGGCACAGTTGCCCCCGGTTACTGCCAGTGTGTTGGCGCAGGGCCGCCCAGCCGCCCTCAGTCCAGACGGTGATGCCTCAGTCCTTGGCTCACAGACTTCGTAGACGCCAGCCATGGGGACACAATTAACTGACACACTGGGAGAGGATGGCATCCCAACCAATCAAAGAGAGTAGTCTTCTATATTACAGAGGAAGTGCCAGCCCGGAAAATAAAAGGCATGTGTATTTCTGTTCGCTTTTAGTTTGATAACCATTCTGGGGGGTAATGTCATGCTTCATGGGCTATACTTTTCTGTCTAGTGTGGTAAAGATAGTCAGTTGGAGCCTGGCTGCCTCCAGTGAATGTGTTTGATTTAGGGACTGATTACGTTATAACTGAATAAACGCCAACCAGTTTGTCCGACCTCTCAGAATGGATAGACCCACTCCGCTCGTCCTGGATCATGCTGCGTCACATCTGCATCATCAACTTTGAGCATCCAATTGTACCATTACCTCTTGCACTATGTTTGCCTTTTAACAATTTATTTAAGACAAGCAAAGGGAAAATGTTCTGTGGCCTTCAAACTTGTCTTTTTAGTGAGACAGGTGTTGTTCTTTTTttgtcttttctttttttttgcttatTACAAAGGAGTAATAAATGTATGCGTAAGCTATAATTTCATTAGTCTGCACAGTTCTGATACTCTACTTTGAGCTGTCTTTATTAGGATTTAATTTCCTTTAACAATCAATGGATTTTATGAATCATGCGGTTGCCTATTTAGATGACAAAGAGTCTAGATTCAGTTTTACTTCGCCACTACTGTAATTTGTGCTTATATTAATTTTTAGGACAAAATAACAGCTATGACCCAGTCAGAAGAATTCGTGGATGGCACCTCTGCatgcagtatgaaggaagttagtttcacgagccaatgctaactaaaGTTAGTGCAAAGACGAGAAGTCTACAGGTACACTTGCATACGAAAAATGGTAtctacgagttcatctgactatgGGTGACTATAAAAAACAGATTCTCGCAGTATCCCTAATTAATGTCACTCAATGTCTAATTTTTCTTAAATAACACAAACAACTGTATGCGCTTTGCTGCACATAACACATTTAGAGGATTTCGTTATTGTGCTTTACCAATGCTGTTCAGTTGTGCCACTTGAGAAGTACGCTTTGATCACCTGAGCTGAGCTAGCTCAGCTTTTGTGGATTGTATGGGGTTGACAGGGAGAAAACACAACGTACTCTAGCTTTACTAACCAGACCTTGCTGCTGCATCAGAGCTACCACTAAACAAGAACTGTGCATCGACATTAATAACCTGTCTGCTTCTTTCATCTCATGTCCTTGCACTGCTGGTCATCTCCATTTCTGCTGAGTGCTGAAACTGACTAGAATGGCTTCCCCCAAGGTAATTCTGTGGGAACGGTTTCCCCCTGTAGCTATATGTTACAGCCTTGGAACAAGACATCTCCTGACTGTCTTGTCAACACCAATAGACCTCACACTCAAAGCTGATTGGGCTAAATGTGTATGGACCTTGATAATGTGACAAAAATGACCTCAGTTCAGAGTCCAGTGCCTTCCATTTTGGCAGTTACACTGGCTTGTTACTACACGCACATTGCAAGCGACTGGAAAGAAGAAAGGTTGTTCCAATTGTGGGCAGAGTATCCTTCACCCTGCAGTGTTATCCAAGCCTTGTGTATATAGCTTTTCCCATGTGCAGCCCACATTGTATGTCACTCTTTCTGCCTTATGGTCAACTTGCTTTCCTTCATCACTCAGCATTACTGTATAATGTCAACTCATAGCTTGGTGGACTGGTACTCTCATTTGTTTTAGAAGATATTAATTACTGAACTACGAAGTCCCACAAAAGATTATAATGATAAAATTCGAGAAAGGAGTGGTTTCCACTTGAGCACTTGAATCAACAATGGGAGTTAAGAAAAAGTAATCAATAATGAAtgtacactgtacagtatataggagGTTGTagcattcaaacagcacttattTATGAGAATCTCAGTCACGATGGAAGTGGCTGGCAGGAGAGAAGGGTGAAAGTACTCTTTAATAACATGGTTTGGCCCCTAGCTGGAAATGGCCCCTGAGAGCCTGTAACTTCTCCCTGAAGTACAAAGTCCCATCACATCACTCATGTCTGTAAGGTCGGTGGGACAGGAAAAGGCCAAGTTATTTTGGTCACTTGGTTCTTAAGTGGGTTGTAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92922 lncRNA downstream 27695 75106374 ~ 75107397 (-) True G84231
TU92782 lncRNA downstream 198692 74936200 ~ 74936400 (-) True G84102
TU92775 lncRNA downstream 208443 74926414 ~ 74926649 (-) True G84095
TU92774 lncRNA downstream 208904 74925949 ~ 74926188 (-) True G84094
TU92772 lncRNA downstream 214469 74920369 ~ 74920623 (-) True G84092
TU92931 lncRNA upstream 5120 75142503 ~ 75142712 (-) True G84240
TU92932 lncRNA upstream 5773 75143156 ~ 75143547 (-) True G84241
TU92935 lncRNA upstream 13811 75151194 ~ 75151400 (-) True G84244
TU92970 lncRNA upstream 65483 75202866 ~ 75203118 (-) True G84279
TU92980 lncRNA upstream 73878 75211261 ~ 75211660 (-) True G84289
XM_036985373.1 mRNA downstream 1820 75112641 ~ 75133272 (-) True LOC110529369
XM_021611511.2 mRNA downstream 1821 75112641 ~ 75133271 (-) False LOC110529369
XM_036985292.1 mRNA downstream 138324 74982256 ~ 74996768 (-) False edrf1
XM_021600288.2 mRNA upstream 207730 75345113 ~ 75348344 (-) True LOC110522123
XM_021611670.2 mRNA upstream 354633 75492016 ~ 75494664 (-) True LOC110529482
XM_021611685.2 mRNA upstream 363327 75500710 ~ 75503281 (-) True LOC110529484
XM_021611717.2 mRNA upstream 418762 75556145 ~ 75574946 (-) True LOC110529486
XM_021611729.2 mRNA upstream 471964 75609347 ~ 75612396 (-) True vkorc1
TU92810 other downstream 161771 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 562303 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 2883174 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 2924003 72207929 ~ 72211089 (-) True G80957
TU88304 other downstream 3391283 71743045 ~ 71743809 (-) True G79904
TU93438 other upstream 390960 75528343 ~ 75528903 (-) True G84713
TU94659 other upstream 1196085 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 1229910 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 1383702 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 1469299 76606682 ~ 76608354 (-) True G86132

Expression Profile