RNA id: XM_021611717.2


Basic Information

Item Value
RNA id XM_021611717.2
length 2445
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110529486
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75556145 ~ 75574946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTAGACCAACAAGGAAATAAAGTTGAGTGATTAGAAGAACAAAAGAAGAGGGTGTAGTGTGTGGGGTGTCATAAGGGAGGGGTGTAGGCAATGAAGGATAGCATGAGGGATATTTAAAGAGCAAATACATGGGCTTTGTACATAACACTTAAGAAATGTCTGTGAAGAAATTGGTATGTTTATTGACGGTGGCAAGTCTCCTAATTCAAGAATCATATTGTCAACTTGATGTGTGTGGGACCACTTCATTCAACAACAAAATAGTGGGGGGTGAGGATGCCCCTGCAGGAAGTTGGCCCTGGCAGGCTAGCGTACACCAATTTGGTGGCCATGTTTGTGGCGGGTCCCTCATCAACAAGGAGTGGGTGATGTCTGCAGCCCACTGCTTTTCTGGCTCAAGCCCAAATGATTGGAACATCATCTTAGGTCGACAGAACCAGGAGGGCAGTAACCCCAACGAAGTGTCCAGAACTGTTGCTCAGATCGTCTTACATCCAGTTTACGACAGTGACACCAATGACAACGACATTGCTCTGCTCAGACTCACCTCACAAGTCAACTTCACAAACTATATCAGACCCGTCTGTCTGGCAGCAAGTGACAGTTTTTACCACAATGGAACTGATAGCTGGGTCACTGGCTGGGGCAAAATCAACGAAGGAAaattcctcccctcccctcgggcTCTGCAGGAAGTGGAGGTTCCAGTTCTGGGTAATAGACAGTGTAACTGCCTCAATGGGGTCGGCTCAGTCACAGACAACATGCTTTGTGCTGGTGTACTGACAGGGGGCAAGGACTCATGTCAGGGTGACTCTGGAGGTCCAATGGTGGCCAAACAGAACTCTGTCTGGATCCAGTCTGGGGTTGTGAGCTGGGGTTTTGGCTGCGCTCGGCCCAATCTCCCTGGGGTGTACACCAGAGTGTCTCGCTACCAGCCCTGGATCGACTCCAAGATCACTACCGACAAGCCAGGCTTTGTCCAGTTTACCTCCAGTGGGGTAGATACTGACAGCAGTTACACATGTCCTGGCCTACCACCTCCTGCTACAAATGTACCAACTAAACAACaactaaaaacaacaacaactaaagcACCAGATATCGCTGTCATTTCAACTGCAGAAGGGCGAGTATGTGGCCGTGCTCCTATGAGTCCCTGTCTAGGGGGCAACAGTTATTATGTTGCGGAGGGAACTTGGCCCTGGATGGTCAATCTACACAGAAATGGGATCCATATTTGCAGCGGCACACTTATTACAGAGGAATTTGTCCTTAGTGCTGCCCAATGCTTCCCTGGTTCACATCTAAATCCCGACGAGTGGACTGTGTTTCTGGGAGAGCACAAGCAGAAAGGATCTGATGTCTTTGAGGCTTCATTGGGCATTGTGAACAtcaccctgaccaacctaactGGGACCAACATTGCGCTGCTGCAGCTGGAAAACTTTGTGAATTTCAGCAGCTGCCTTCAGCCTATATGTGTAGACCTGAGCAATGATGGACGTTTCCCACCTGGGACTCAGTGCTGGGTGACAGGCTGGGGAAACCAGGACAAAGGCAAGGTGAACGGCACCACTGGGACGGGTCTATGGGAGCAGCAGGCTAATGTGATGAGCTGTGGCAACATCTCCTCCACTGAGAACATCTGCACTACAGCGATGAACCTGGAACAGGGAGATGTAGGTGGTCCCCTGATGTGTAAGTCTGGGTTGGCATGGTTCCAGGCTGGAGTGATAACAATGAATAAGGATGAAAATGATACCAATTTGCGAGCGACCAAGATGCAGATTTTTTCCAAAACCTCCAGATTCGTGTCCTTTTTTAATAAGATGATCAGTGACTTCCCCACCCCGTCAACAACCACTGTCCCTAACAACACAGGAAATGCAGCCCccagccccctctctctttcactcttattttatttttttctccccaTTCTTGCCATGGTCTTGCTGTCAGGCTGGTAGTTCCTCAATCTCTCTTTTTGGTAGTGTCTACAAAATATATAACTTTATGCACCAGAACCAGGGTAATGAAATTTGAGGATTACATTTGTGGCACCAAAGAAAGAAACTAGCAATTTGACAAATGCGTGAAAGTCAGGAATAATCATACAATGAAACTAATGAAGGTAACACTTTATGTAAAACATTGTTATAACTAATTGGTGGAATCTTTTATGTGAAATAATGTTtttcaagcaaataactgtttaATTGGTACTGATTAATAAACTACCTATAAACCCTTTATAAAGTATTGTATACTTCAATGTAAAGTTCCAGTGAATGATGACATGTTTAACATATCAGTTTTACGGCGGTAATGTACACAAACAAAATAGGTTGGCATATATTATGTTTTTAAAGTAATGTTATCTATTAAATATAATAATtgtatactgtaaaaaaaaaaatgaaaataaatgtttatcAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93445 lncRNA downstream 18574 75537016 ~ 75537571 (-) True G84720
TU93446 lncRNA downstream 20748 75535065 ~ 75535397 (-) True G84721
TU93442 lncRNA downstream 23666 75532268 ~ 75532479 (-) True G84717
TU93429 lncRNA downstream 31869 75524066 ~ 75524276 (-) True G84704
TU93426 lncRNA downstream 33618 75522295 ~ 75522527 (-) True G84701
TU93508 lncRNA upstream 17816 75592762 ~ 75593143 (-) True G84779
TU93528 lncRNA upstream 29356 75604302 ~ 75604576 (-) True G84798
TU93751 lncRNA upstream 159483 75734429 ~ 75734647 (-) True G85001
TU93786 lncRNA upstream 209274 75784220 ~ 75784504 (-) True G85035
TU93787 lncRNA upstream 209601 75784547 ~ 75784828 (-) True G85036
XM_021611685.2 mRNA downstream 52864 75500710 ~ 75503281 (-) True LOC110529484
XM_021611670.2 mRNA downstream 61481 75492016 ~ 75494664 (-) True LOC110529482
XM_021600288.2 mRNA downstream 207801 75345113 ~ 75348344 (-) True LOC110522123
XM_021611577.2 mRNA downstream 407355 75135079 ~ 75148790 (-) False LOC110529412
XM_036985375.1 mRNA downstream 408353 75135079 ~ 75147792 (-) False LOC110529412
XM_021611729.2 mRNA upstream 34401 75609347 ~ 75612396 (-) True vkorc1
XM_036985519.1 mRNA upstream 749585 76324531 ~ 76399997 (-) False ccser2a
XM_036985521.1 mRNA upstream 749585 76324531 ~ 76399997 (-) False ccser2a
XM_036985524.1 mRNA upstream 749585 76324531 ~ 76399997 (-) False ccser2a
XM_036985527.1 mRNA upstream 749585 76324531 ~ 76399997 (-) False ccser2a
TU93438 other downstream 27242 75528343 ~ 75528903 (-) True G84713
TU92810 other downstream 582824 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 983356 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 3304227 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 3345056 72207929 ~ 72211089 (-) True G80957
TU94659 other upstream 758522 76333468 ~ 76334136 (-) True G85866
TU94594 other upstream 792347 76367293 ~ 76399956 (-) True ccser2a
TU94870 other upstream 946139 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 1031736 76606682 ~ 76608354 (-) True G86132
TU95290 other upstream 1291958 76866904 ~ 76867598 (-) True G86448

Expression Profile