RNA id: XM_036985473.1


Basic Information

Item Value
RNA id XM_036985473.1
length 3139
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110529500
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75615217 ~ 75648612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGCCGCTAGATGGGGCAAAAAATCCATGTTTAACACACGCAGTATCAGCCTAAAGTTAGTACACTAGCTACGTTTTATACAGTGAGTGGGAACTCAACCAACCCAGCATAACAAGAGGAGAGGCTGAATCAATGAGCTCCTGTGTGAAGAAAACTTGAgctGTCCTCCAtctaccctcttcccctcctctctcctctctcccggcCCCTGGGCCAGGGAATGTGCCGGCTGGGAGATGCCTTACGTGGATCGGCAGAACCGGATCTGTGGCTTCCTGGACATCGAGGAAAACGAGAGCAGTGGGAAGTTCCTGCGTCGCTACTTCATCCTGGACACCCAACCAGGCAGCCTGGTGTGGTACATGGACAACCCTCAGAACCTGCCCATCAGTGCGGACTGTGTTGGCTCACTCAAACTCACCTACATCTCCAAGGTCAGCGACGCCACTAAGCAGAGACCCAAGGCAGAGTATTGCTTCGTCATCAACGCTGGCATGAGGAAATTCTTCGTCCAGGCCAATGATCAGCAGGACCTGGTGGACTGGGTGAACGCTCTCAATAAGGCCACCAAAATCACTGTGCCAAAGTCCAATGATGGCCAACAGAATGTGGAGACCCAGAAAGCCCTTCTGGACAACCTGGGACCCAAGAAGCAGGTCTCCTACAGGACTGACATCATCGGGGGAGTTCCCATCATAACTCAGATGCAGCAGGAAAGGGGAGAGGGCCAGGAGGGTTCCGAGCGAGAGTTGCTGCAGAGATCCCACAACCAGCTGCCATACTTCCTGGGCAGGCCGACCCAAGACAAGACGGTCATTAAGTCTGGCTATTGTGTGAAGCAGGGAGCTGTGATGAGGAATTGGAAAAGGAGATATTTCTTACTGGAGGAGAACTCAATGAGTTACTTCAAATCAGACCTGgagaaGGACCCTCTGAGAATTATTCCATTGAAGGAGGTCCACAAAGTTCAGGAGTGCAAACAGAGTGACATCATGATGAGGGATAATCTCTTTGAGGTTGTCACCACTTCTAGGACCTTTTACATTCAGgctgaCAGTCCAGAGGAGATGCACAGCTGGATCAAGGCTGTCTCTGGGGCCATCGTAGCCCAGCGGGGACCTGGGAGATCTGCAGCCACAGAGCACTGTGGCTGTTCCTCCTCTTCCACATTCTACAGCAGCCACCCGGGGCCCCCCGTCCCTCGCTCGCCCATATCTGCAGTGCCACCCTACCCAGAGTGCCCTGCTGTCACGGGCGGCGCATGCCCGGAGCCTGGCGTGGGACAGCGAGCATTTCATGAGCCTCCTGCCACGACCCAGCCACGCCCGACTGTCACTGCAGGAGACACGCCTGTCCAAGTGACTGCTGCCACCACACTCGAGTCGCCATGGAGACGGTGCAGCACCTTTGAGGGCTACACACCAGAACCCCCCCCTTGACTTGGACCCTACCGACCTGCCAGTCAGTGAAGTCTGACCCCTACCAACAAACTAGGAGATGATGTGTGACAACAGTGATAATGGAGGAAATGAGAGGAGTGCTTTTGAATAACCGAGAGAAGCAGAACCAGGGGGTTGCTggtctcctccaccaaactgacCAGAAGTAATCTGGATAGAAATGGCAGAAAGCAGGAACTGGACTCCATGCCAAAGTGAATGACTGTATAATATGTCTGACCTCCATCCATCTCGTTACCTAACCCAACTAGTCAACCCTGGTCAGATATTAGAGTTGAAAGTCACTCAGGGACAGAGGGGTTGCGTTCTCTCCTGGTGTTTCATTGTTAGTCATCTGCTCAGTTGAAGTTGAGGCCTGTGTACACATGCATAAAGTCATGCAAtcaggtgtgtgggtgtgggtggggtGGGATTCACACTGAGCTCTATGCCAAAGATACGCCATTTTCTCCCACCTCAGATCACACGTTAATGTTCGCCTACACATTTAGATTTAAAATGCAATGAAGAGTTTTACCTGCAACTCCTGACTACACACAAAGATTAATTCAACAATTTGTGTGTTAGTGAGTGTATATTTTAAGGGAGCAAGCTATATTGTCTGAGGGAATAGTTGTCAAGCTACAGAAATAATCATGCCTGGTCATTTCATACATTCACTGTTGTTCTTATTGAACattgtctttatttttttactttactgTATGGTGTATGACCCAAATTATTCTAACAGACATTTCCTTTTTCTGATTTTACAATACCACTCAAGATCCACACCATAGTATTACAGTTAGAAAGTTGTTGGCACACACTGTGGACTGGTACGAGAGGACTGTGCAGCTCCAATGCAAGCCATGTGGGTCATTCCACCACTTCGGTGCCTTTTTGAGAAGTATAaagtggtaaaaaaaataataatcacctTAATTagcattctgtcataaagagcacatttcaactttagcaagtctttattcagATGCAAAAAAATCAGATTTATTGAATTCTTTGTGTTGTCTATATTAAAGGctacttcatttaatataacagacTTAAATGTGTTGTTGGTGCACAATTTTTACTTAACATATCAAAGGGTAgcaaaaggcactcatttcgtgCAACGATCCACGGATGTTTGCCTAATCCTGCAGGGTACTGTTTTGGGGTTATCTTCTGACTTGTACCAATAGGAGCTTAGTGGGGGAGTGAGTTGAGCGACAGAGTGAGGTGGCTTCAGTACGGGACCAAAGTCAACAGCAGTCACTACTAGGGAAGGGATGGCCAGAGTGTCTTGCAGAGATGATGTTTAAATAAATACTGGTCACCAAACCTGCCTGACCTCTTCAGACCTGTATACTGTACAGTGGCTTCAACCATTTTAATGACTGCTGCCCTATTTGTTGAGTTATGACAATGACAGCTGCTGTTTTGTGCGTGTGATAACATTGGTTTTCTTCAACAGTTTGTATGGGATGGTTTTATTTTATGTTGTAAAATGATGTGGTAAGATGTATATTTCCGTTTGAACTTCCCTGTGCCTGTATTGCCAGGTAGTGGAGGTTAACCCAGCAATACTACTCAAAGGTCTTATTTCAATAGCTCTCAGTAGTGGTTTTGCAAAACCATATAGCTGCTAAAGTGCCATAAATtctataaaaataaaatgttattctaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93515 lncRNA upstream 17726 75597250 ~ 75597492 (+) True G84786
TU93514 lncRNA upstream 18476 75596478 ~ 75596742 (+) True G84785
TU93507 lncRNA upstream 21814 75592762 ~ 75593404 (+) True G84778
TU93505 lncRNA upstream 22058 75592632 ~ 75593160 (+) False G84778
TU93671 lncRNA downstream 88525 75737137 ~ 75737377 (+) True G84925
TU93672 lncRNA downstream 88866 75737478 ~ 75737684 (+) True G84926
TU93706 lncRNA downstream 135958 75784570 ~ 75784871 (+) True G84960
TU93707 lncRNA downstream 136381 75784993 ~ 75785203 (+) True G84961
TU93708 lncRNA downstream 137068 75785680 ~ 75785946 (+) True G84962
XM_021611701.2 mRNA upstream 75875 75535002 ~ 75539343 (+) False LOC110529485
XM_021611613.2 mRNA upstream 303724 75298807 ~ 75311494 (+) False LOC110529439
XM_021611643.2 mRNA upstream 303724 75298854 ~ 75311494 (+) False LOC110529439
XM_021611619.2 mRNA upstream 303724 75298950 ~ 75311494 (+) True LOC110529439
XM_021611650.2 mRNA upstream 304967 75298807 ~ 75310251 (+) False LOC110529439
XM_021611753.2 mRNA downstream 7975 75656587 ~ 75693011 (+) True LOC110529506
XM_036985510.1 mRNA downstream 46820 75695432 ~ 75724153 (+) False LOC110529516
XM_021611780.2 mRNA downstream 46822 75695434 ~ 75724153 (+) False LOC110529516
XM_021611764.2 mRNA downstream 46823 75695435 ~ 75724153 (+) False LOC110529516
XM_036985512.1 mRNA downstream 46823 75695435 ~ 75724153 (+) False LOC110529516
TU92648 other upstream 469706 75144864 ~ 75145512 (+) True G83979
TU92479 other upstream 501028 75112660 ~ 75114190 (+) True G83829
TU92487 other upstream 705412 74909225 ~ 74909806 (+) True G83836
TU90667 other upstream 2043481 73551616 ~ 73571737 (+) False G82111
TU94291 other downstream 809512 76458124 ~ 76459823 (+) True LOC110529610
TU94822 other downstream 983133 76631745 ~ 76635936 (+) True G86019
TU95475 other downstream 1475323 77123935 ~ 77124427 (+) True G86614
TU96076 other downstream 1921403 77570015 ~ 77570470 (+) True G87159
TU98716 other downstream 3900405 79549017 ~ 79549651 (+) True G89667

Expression Profile