RNA id: XM_036985521.1


Basic Information

Item Value
RNA id XM_036985521.1
length 7515
RNA type mRNA
GC content 0.49
exon number 12
gene id ccser2a
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76324531 ~ 76399997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATCAAGTAGAGGAGGATGCTGGAATGATAAAGCATCAGGCATCTAATCTCCTTTGAGAATTCCGCTGAACTGTTTTCTGCTGGACGTTTGAATTATTTGACGGCACGGACACGTGGATATAGAAACAAACTTGGCGATGGTGATACCAAGAGGATAACTTCAACTTCAGGACAGCTACTGCCTTCATCTGACACTTGCCTTCGTTGGACCGTGGACCCTAGTAAACCTGACCGAATAACTTCATAATTCTGTTCTTCCAGCTGATGGAAGAGAAGACACCCATCAAGCTTGCCATGGTGTCCAGACTGCCTAAGTTCGGTGTCCGCCCCACCACGGGGGTCACCAGCCCCCTGCCCAATGGAACCACCCCTTCACCCCAAGACAGCAAGACCACCCCCCCAGCAAGACCCAATGGGGTGGTCCgtgcctcctccttctctctaaaATGGAGGAAAGACGGTGGCAGTACTCCAGCCACCCCCACTAGCCTTGAAGATGATGCATGCCCAAAGGAGGGAGGGGACAAGCCCAAGACTCAGCACTCCACATGGGGGAGGGAGATCAAGAAACCGTCCCCATCCACCCCTAAGAGGGTCAGGAGTTCTGGTTCGTCTGAGTCATCTACTTCAAGCCCCAGGGCCATCCCCCGCCAAGTCGCAAAGACCAGCCCCAAGGCAGGGCCCAGACAGGGGCAGAGCGCCTCCTTCAGTGGAGGCCCCAAACTAGGCCAAAATGGAGCTACTGATGGCTCAGGACAGTCAGGTTCAGGGCTGGTAAGGCCACGGGCCAGCTCCAGCTCCCCGCGCAGCAGCTCTAGAGATAGCCTGTCCCAGTCCAGCGACAGCCTCAAGTCCCTCACACTGGACAACATGGTGCGCTCGCAGAGTTTCACCCACTTCAAGCAGATCCCGTCCCCGACCAACTTGCCCATGGCACGCTCCTTCTCCTTTAACCGGGCAGTGGAGCTGGCCAAGCCTCTGGCCAACACCCAGCTACAACCACCCAGGGTCAACCACATCAGACCCCACCAGCTGTCGAATGGGAGGCAGGGCCTGGGGATGGGCCTCGGCCTGGGGACAGGGCTGGGGGGGCTTCAGTATCCTAGGAGCCTCTCTTCAGCCGCCTCCCCCTCCACAACCCCTAGTGCCCTGAAAAAACCTCTTCTCCCCAACTGTGTTCTGAACAAGCCTTCTGCTCTGGGCTATAGACTGACACGGCCTGGCCAGGTCAAGCAGCAGAAACCCCTGTTTACAGGGAGGGTGAAGGGGGAGGTCAGGGCTGGAGGAGTGGGGGACGGGGATAGGGCAGAGTCACCCCCCCTCACCCTCACTCCAGACCCCCTTAGTGACAGCGACAGGACCTCAGGGGGGCAGCtcagggggacaggggaggggcTAGAGGAcatgtctctctcctcagcctcatCGCTCTCTCGAGGAGACACCAGCGAGGAGTTCTTGGATGACTTTAATAACCTGGCTGATGGGGATGTCCCAGACAACAGGACGAGAGGTAGTACTGCCACTCAGACCCGCCTGCGGAGCTTCCTGAATGAGACCATGGACTGGAATGAGATGGGCCTCTCAGGGCGGAAGGAGGAAGTTGGGGTGAGGACAGCCCTTGACATCCTGCCCCCAGAGAGGGGAGACTTCCTTCAGGGCTCGTCTCTGGAGCTGTCCCCCTCCAACAGCTCGGGGGGCACCTACATGTGGGACGAGGAGGATCTGGAGCCCCTGGGACCCAGAACACACCCATGTGAGAGCTATGACGACTCAGACCGCCTCAACAGCATGGACATTCTGAACAACCTGGACCCCCTGGAGCCAGCTGACCTGGAGGATGACGACCTCATGCTGGACGTGGACCTCCCTGAGGACGGCTCTCTACGAACACAGACAGTAGTGGCTCCAGaCGCTGATGAGATGACCCATTCTGACCACTCAGAGAGGGGGGGACGAAAGGGTCACTGGAGGAGGAGGCAGCCTCGCTGGAATGGACTAGACCACTTCCATAATGACAACAGGGGTCCAGTGTTCCAGCAGTATGAGGGTTACACTTGTCATGGAGGGTTCATGGTTGGCCCCCGTCCTCTTCCTCCTGTAGGGAGACACGATGGCTACTCGGGGGCGCTGGACGAGCTCACACTCAAACACATGGCCCAGGACTGCAGCTCTGTGAAAAACAAGCTGCTCAAACTCAAGAGTTTattacagatggaggatggaggcccAGAGCTTGTGAAAGAGGGCGAGGAGGTTGAGGAGGATAACAGCACAACTATACAGTTGGAGGAGCTAATGAAGGAGGTGCGGGAGCTCAGGGAGGAGCTGAGGGATAAGGACAGGACAATCACGCAGCTCACACGACAGCAACAGGCGTCTGCTCACGCTGACCAGCCTGGGAGCTGTCACTGTCACCAGAGGGCACCGTCGCtggaagaggacagacagacgcACCAAGACAAGGCCACACAGACCCCCTGGAGAGGACAAGGAAACAGCCATGCCgagggagagagggagagaggtagagagagagagagagagaccccagagATTCCACACTCACCGCCCTGCCCCCAGCTACCACCAGAATCCTGCTGCTTTGTAAATCAACTTCATATTATCAGACAGCTTCAAATACTACAGCCTTCCAGCCCCAGCCACCACGAGCACCTCACCCAGGAAAGACTAGTAAAAACAGCCCTCACCGAGGGCCACAGTGACCCCCAGAGAAGGAGGAGCAGGGGAGATGGGTCCCCTTGCACAGACTCTGACCGCCCTGCTAGAAGCCCGGCCAGGGGTGTCGACAATCCCCCAGTGTCCAACCCAGACGAGTTGAGTGTGCTACTCAGCACCCAGCTCAACATCAATGACAGAGAAGGGCCTGGGACCACCCCCAGCCCTACCCAGGGGCTCCCTGCAGCCAGCAGCCCAGCAACAGGAGCGCTGTCCAGGCCAGACGGTGGGCAGCGAGCCTCTCCAGAGGGCCCTGGCTGCCCTCGCTTCCTGCAGCGGCCTCGCCTCCACAAGCGTGTGTCTGTCCCAGCTCTGCCTCAGAGGTACACTAATGGCTCTCTTCTCCGATCAAGCTCTGTAGGACTGCTGGCCAACCACAGGACCAAGCAGCTGCCGCCTCCCTCCAGGGGTCTACCCTGCTTCAATTCTGGTCCCCAGGCAGTGGGCCCCTCCCTGGGACACGGTGTGCTTGCTCAGCCCCACACACTGGGGGTCAGGAGGGACCTCGAGAGCACCAGCCCTCCTAGTCTGGAAATGCTAGACCTGGGACTTCTCAGAGCTAGAGTCCTGGTTCCCCCCATCCTGTCACGTCTCCCCAAGCCAAAGATCCATTGAAGAGTTCACATCATCAAACATAttgtatactatactgtataacaTCTCTCCTCTTCCACAGCCTCATGGTTATGACTGAGATACGTGGAGGGACTGTTTCTAACTGACAAATCTCCTTCATAAATTGTCCAGTTACTTGCTTAGCAGCCTTTCATTGCACATAGtcattatttttatatatatgacaaacattcatattttttatttggtAATCTCACTTGTGTGTTTTCTTTAAGAACGCCAAGACTGTACAGAATGCTCCGGTCAACTCTACTCACACTCACATGGGTCCTTCCTCTGGAACAGCAGAACATGGTTTGACCATGGTCTTCCATGACATCAGCAATGTTACATTTCTCCCAGAGGGTAAACATAGAATGACAGAAaaaaagcgggggggggggggggggggaataaggaGTTGAGCTTTCTGCTCAAACAGAATGAAGAATCATTCAAAGAAAGAGGCTCAAACATAAACAGAATTCTCCTGAATAAACCACAGTTCATTTTGTCGTCCTATTCCACCTCTATGAGTATGTAaggtgatgtgtgtctgtgtgggtgctCTCCCTTTCCTCTGAGATCAACATCAGTGTTTATTGTATTTTGAGTAGGGCTAAGGTCAGTTTGAGGATTTGAGGGTTATGTTTATCGTTTGGATGCATCCAGACATGGAGAGTGTGTTTAACAGTTTCTGACAGACTATGGCAGCTTCCATGAATGTGGGCTATGGCTGTAAGTTAATGCCTCTGGCACTCTCTGTTTTACAGTACCCATTAATACCATGCacacatgaaacacacacacataacacacatcacacacacacactcacacaccaaaTACTCTCACCACTTTGGCGCTGTCCATAAATTCAAATCACTGTACACAGTAGTGTTGTTTCAAGTAATTTATTACAGTTAGCTAGATGGTCAACAGTGTCTTGTTTTTTCATTTAGTATAAATCCGACtgactgagagacacacacacttctggaAAGTTCTCATAGGGACATTGATCCATCTGTCCCCTACAGCAAGACAAGATGGGTGCCAGTGTGGTCCTTGGGGACTGAGCTGAGCCCAGGTGAtgacaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtctgttttgtgGGAGAGAGAATATTTGTGTTTGCCATGGTGAGATGTCCCATGCCATCCGGACCTGTCAGTCAATACTGCTTGGTAATTCCAAACAGAGAAATCAATAGGACCTTGGTTTTTAGTGAGAAGGGAGGATGTGTGTGAGTCTCTAGATACACCAATCTGGCAGTGTTTtcattgggtgtgtgtgtgtgtcaggtgtacAGTATGTGCCCACAGGCCACAGAAATAAAGCCAGGGAGAAAGGGTAATGCTGTTCTCTCCATCAGCCAATCAATAGCTTTCATCAATTATTCTAAAGCAGGAGTATAACTATCTCGGGGGTCCAACAGGTCGATCTCGCATCCCGTACTCTGCCATGATGTGCACTAGGCCTAAACAGATAAATCGCTAGCCAAACACATTCGTCTCTTGCTAGGTGTGCACTTGAATTAAAGGGGAATCACACTCAAACGTatacatttgttattttttttcaagaccgtacattttttattttgatgtgatttatGCATTGACATGGACTCTGAACatccaatgttgttgtttttcaatAAGTAATTGTAATTGTCTGAGTGAAACAACTGAAAAAAGTAAGCAAATAAATGAGTAACTTGCAGCATTTTTTGAAGTAGATCTCATGTTAGAAATTGCCGGAGACCCCTGAGCTAGCTAAACCAGAACAAAGAGCCCACACTGCAACTGTAACAGTGTAACTTTAGTCCATCCCCTAGCCCCGACCCGagttcgaaccagggaccctctgcacacatcaaccacagtcactcacgaagcatcgttatccatcgcgccacaaaagccacggtccttgcagagcaaggggaaccactacttcgaggtctcagagcaagtgacgtcaccgattgaaacgctattagcgcgcaccaccgctaactagctagccatttcacatcggttacacaacaAAACAAGAGGAATTAATTAATTAGCCATTTCTAACACGTTCTCTTTAGTGGCAAAACTAGCAAGCCTTGTTCATCGTATTAGTTAATGGAACATAGCTGCCTGCCTATCATCAGTAGGATATTATACTTTACTTGTTTGTAGCTGTTGTTAAAGATGACATATTTGATGCAATTGTGCAGGTTCAGTTTAGGATAGGGTTGTCCACTCTGCTGTTTGGTTTTACTCTGAATACATTTCTAACAAAATGGGGGTTAAGTAATATTTGTAAATCTACCTACACTGTTAATGCAACAGGACTAGAGTTCCTTCCTGTTTCTCCACTACTTACACATAAACCACTAGACGTTTACACACCAGTTAACTCATTTGCTGATTACTTACTTAGTTACTAAAGTGTACACCCGTTACAACCGTTGTGACCGTTGTGAGAGGTATTTGTCTATCTTCAATGCTTAACATTTCttgtttctgtatttcatgtCAAATCACCTCTCCACCCATCCTGCTGTAATACATTATCCCATTGCATAACGTGCAATATTGTAAGAAACAGCTATATTAACCAATATAGATACTGATATTGAAGCAACGCTATATGCCTAACAACTGTTGTTTACCTATATGcaagtgaattttttttttttgtaagctAATCAGCGATGCACTTTAAATGACAGTTGAGACTGAAGGAAACACTAAACTGGAGATTTGTTAAAGATTTGACTGGATTTGTTCGTGTTTTCCTTTCTCCGTTTGTACTGTTCTCTCTCCTGGAGGTTGTGTGAGACAGCAATAAAGACTATCAAACTTGCCAAGTCTGTTTTGGAGTCATTTACCTCAGGTCAAGCAGTGAAAGATGTCAAGTTGTTGTTGTGCAGGATTATTCATGCTTTAAAGCAGGCAGCATCAAACCCTGTTATTCATGCTTTAAAGCAGGCAGCATCAAACCCTGTTATTCATGCTTTAAAGCAGGCAGCATCAAACCCTGTTATTCATGCTTTAAAGCAGGCAGCATCAAACCCTGTTATTCATGCTTTAAAGCAGGCAGCATCAAATCCTGTTATTCATGCTTTAAAGCAGGCAGCATCAAACCCTGTTATTCATGCTTTAAAGCAAGCAGCATCAAACCCTGTTATTCATGATTTAAAGCAGGCAGCATCAAACCCTGTTATTGTGGGCCATTGTTGTCTGTTGCTTGTTTTCATCCAGGCCTTTTCATCAACGGATTCAGACCTGATATGCCAGATATATGGATGTCAAGTGGCATTTATTAATGTAAtactaggaggaagagagaatgaaTGATTCTGCAGCCAACTTCGTCTAGGGTGACAGCAACCATAGAGAATTATAGGCCATATTAGCATGGGTACTGTAGctccattttaatgtagtcaactgggtgggacttacAACTTCATTGGttgatccctcctggtgaccctgttgTAGTCCATGTCTTAactgggtcatcaggagggatcagccaatcgtGAAGAAAATTGACTACAATAAAATGGAGacggcctcaatggcgctgctcATGTAACAGATGCTAGTGCTCCCGAGTGGTGcggaggtctaaggcactgtgtctCAGTGCTAGGGGTATCACTACATACCCTGCTTTGATTCCAggcatcacaaccggccgtgattgggagttccatagggcggcgcacagttgTCCGGGTTAAAGTTTGGCTggggtagactgtcattgtaaatatgaatttgttcttaactgacttgtctagttaaatgaaggttaaataaaaagatAAAGATGCTaaaatggcacagatacaaagatgagtcctctgtCTATATGATGGCAACAGATCTATGGTTTTCCTGATGTGTTGTGCCCCTACTGTATGAGTTTTGTGGATGGAATAAATGGAGATTGTGCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94645 lncRNA downstream 24052 76300236 ~ 76300479 (-) True G85852
TU94644 lncRNA downstream 24808 76299376 ~ 76299723 (-) True G85851
TU94626 lncRNA downstream 48910 76275375 ~ 76275621 (-) True G85834
TU94606 lncRNA downstream 80235 76243932 ~ 76244296 (-) True G85814
TU94605 lncRNA downstream 80692 76243502 ~ 76243839 (-) True G85813
TU94736 lncRNA upstream 44941 76444938 ~ 76448769 (-) True LOC110529591
TU94750 lncRNA upstream 62030 76462027 ~ 76462551 (-) True G85950
TU94751 lncRNA upstream 62585 76462582 ~ 76462892 (-) True G85951
TU94761 lncRNA upstream 74852 76474849 ~ 76475437 (-) True G85960
TU94869 lncRNA upstream 116254 76516251 ~ 76523481 (-) False G86063
XM_021611729.2 mRNA downstream 712135 75609347 ~ 75612396 (-) True vkorc1
XM_021611717.2 mRNA downstream 749585 75556145 ~ 75574946 (-) True LOC110529486
XM_021611685.2 mRNA downstream 821250 75500710 ~ 75503281 (-) True LOC110529484
XM_021611670.2 mRNA downstream 829867 75492016 ~ 75494664 (-) True LOC110529482
XM_021600288.2 mRNA downstream 976187 75345113 ~ 75348344 (-) True LOC110522123
XM_021611948.2 mRNA upstream 44411 76444408 ~ 76452166 (-) False LOC110529591
XM_021611938.2 mRNA upstream 44411 76444408 ~ 76452167 (-) False LOC110529591
XR_002474419.2 mRNA upstream 45652 76445649 ~ 76452168 (-) False LOC110529591
XM_036976270.1 mRNA upstream 65966 76465963 ~ 76467210 (-) True LOC118964475
XM_021612160.2 mRNA upstream 463482 76863479 ~ 76871869 (-) True LOC110529704
TU93438 other downstream 795628 75528343 ~ 75528903 (-) True G84713
TU92810 other downstream 1351210 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 1751742 74572447 ~ 74572789 (-) True G83429
TU89447 other downstream 4072613 72248604 ~ 72251918 (-) True LOC110528794
TU89450 other downstream 4113442 72207929 ~ 72211089 (-) True G80957
TU94870 other upstream 121088 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 206685 76606682 ~ 76608354 (-) True G86132
TU95290 other upstream 466907 76866904 ~ 76867598 (-) True G86448
TU96006 other upstream 1078606 77478603 ~ 77479939 (-) True G87090
TU98450 other upstream 2649814 79049811 ~ 79050491 (-) True G89418

Expression Profile