RNA id: XM_021600418.2


Basic Information

Item Value
RNA id XM_021600418.2
length 1403
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110522192
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76404181 ~ 76416951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaggggcagaTAAGGCAGGATTGTAAGAATAGGAGATCAAATAAAAGGGGGGAGAATGTATAGGCAGCAGACCTTAAAAACAGATACCTTTAAGGAACGGGTGTAAAGGAGAGGGAAATATGTGCAGCTGGCAAGACGCAGAACAGCAAGCGGAATAGCAACAGAGGATAGAAGCAAGTGAAACTCTGGACTGTTAGAAACTTTCTTCTCTCGCGTTCAGCCTGACTATGAACCTGCTCTTTCTGCTGGTCCTGGCTTTTCACCCTGACCTGGCCATGGGAGGCAGAGCCCAGCGCAAACAATGGCAGGCTGAGAGCAGTCTGAGACCATATCTGGGTAGAGTGGACCCAGTCCTACTATGTGAGCTTCTGAAGTGTCACAGTCCAATGGGCTCCTGGTGCCAGGTGGTGCAGGACAACGGAGTCCTCTTCCCAAAGTGTGTGTGTCCTAAGATCTGCCCACGGCAGGGGGCACCAGTGTGCAGTGTTCTGGGAAGGACCTATGGGAACGAGTGTCTGCTGCATAGAGAAGCCTGCCGCAAGAGACGTCACATTGGACTGGCTCATAAAGGGCCTTGTCTGGTTCCCAAGGTAAACTGTACAGAGGAGGAGTATGGCCAGTTCCCATACCGCCTCATGGACTGGTTCCTCCTATTGAGTCGCATGGGAGAGACCTACGCCCCCTACGCCCCGCCTCAGAGCTGCCTGAGCCACACCCAGCGCTCCCAACTAGCCCAGCGGAGGTTTGGCCTGCTGGACAAGAACAAGGATGGAAAGCTGAGCCGGAAAGACCTGAGGAAGCTACGCTACAAAAGAATGCCTCTAGAGCACTGTGCTACCTCCTTCTTCCAGTCGTGTGACCATAACAAGAACACTAAGGTGACCCTGCATGAATGGATCTCCTGTCTGGTGGATCGCTCAGAGATCTGGTTCCACAGCTTCATGTctATGAAAATGGGATCCGGTAAGCTGTGTCCCATGAAGACTGACAACCACCTTTGACCTGGATATGAACACCTCTCTTCTCGCATTGTGTATTATTGTGttatcattttttaaatgttctgttACTTCTCATTTTTATCTCTCTGCGTTGGGtccgtcagtaagcatttcaatgttagtctacacctgttgtttatgaagcatgtgacaaataacatttgattatattttaatttgatttgtCTACATGTGCATCTGTGTATCAATGCTATCTACATTCTACAATCATCAGCATCAATTAATTATCCACTGCCTGTATCATATTTCCACTACTCCCTCTAACGGTCACACTCAGTACTGCATTTGTTTTTGATTAATGACATCATCTGTTTTGAGAAGTCCACTGTAGATTTGTCTGTGTGGAGAAATGGCCTGTAATAAATGTCTATGAGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94230 lncRNA upstream 59978 76343747 ~ 76344203 (+) True G85458
TU94223 lncRNA upstream 69229 76334664 ~ 76334952 (+) True G85451
TU94222 lncRNA upstream 70973 76332924 ~ 76333208 (+) True G85450
TU94221 lncRNA upstream 71595 76330228 ~ 76332586 (+) True G85449
TU94204 lncRNA upstream 102892 76300798 ~ 76301289 (+) True G85432
TU94285 lncRNA downstream 9970 76426921 ~ 76429453 (+) True LOC110529556
TU94297 lncRNA downstream 32099 76449050 ~ 76449561 (+) True G85519
TU94299 lncRNA downstream 33775 76450726 ~ 76450936 (+) True G85521
TU94300 lncRNA downstream 34720 76451671 ~ 76452154 (+) True G85522
TU94303 lncRNA downstream 49252 76466203 ~ 76466666 (+) True G85525
XM_036985516.1 mRNA upstream 226203 75833931 ~ 76177978 (+) True LOC110532683
XM_036985510.1 mRNA upstream 680028 75695432 ~ 75724153 (+) False LOC110529516
XM_021611837.2 mRNA downstream 3476 76420427 ~ 76433438 (+) False LOC110529556
XM_021611846.2 mRNA downstream 3476 76420427 ~ 76433438 (+) False LOC110529556
XM_021611876.2 mRNA downstream 8696 76425647 ~ 76433438 (+) False LOC110529556
XM_036985595.1 mRNA downstream 8696 76425647 ~ 76433438 (+) False LOC110529556
XM_021611854.2 mRNA downstream 8699 76425650 ~ 76433438 (+) False LOC110529556
TU92648 other upstream 1258669 75144864 ~ 75145512 (+) True G83979
TU92479 other upstream 1289991 75112660 ~ 75114190 (+) True G83829
TU92487 other upstream 1494375 74909225 ~ 74909806 (+) True G83836
TU90667 other upstream 2832444 73551616 ~ 73571737 (+) False G82111
TU94291 other downstream 41173 76458124 ~ 76459823 (+) True LOC110529610
TU94822 other downstream 214794 76631745 ~ 76635936 (+) True G86019
TU95475 other downstream 706984 77123935 ~ 77124427 (+) True G86614
TU96076 other downstream 1153064 77570015 ~ 77570470 (+) True G87159
TU98716 other downstream 3132066 79549017 ~ 79549651 (+) True G89667

Expression Profile