RNA id: XM_021611938.2


Basic Information

Item Value
RNA id XM_021611938.2
length 3502
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110529591
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76444408 ~ 76452168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGGTATCCATGACAGCCTTGTTATTGTTGTCGTGAGGGATGCTGTAGTTAATGGCTATATTGATTATTTTACTGGCGCTCCTGAAACAACCTATAATACCATAATACTTTTAGGCCGCGTTTTATTTGAAGTATTCCACTGCATTGTATATTAATAGGCCACTTCGTGCACAACTGCGCGGTTTGGTTCTCCCTCtcagttagctaacgttagcgaatCTAGTAGCTAGATTGCTAGCTAATGTTTGTTAACGTTAGCAAGTTCGCTGCAATTAAGTTCCACATCAAAGACAacgaagctagctagctaggtaacttGCTAGGGTGTACAGGTGTTATTGAACCGCGGGCGGCTGAAAATGACAAACCTCTGCCAAAAGAGCAAGTGGGGACATGAATCAGAGGGAAGCACGGTGAGAGAGGACACTCGGGGGGGCATGAGGCGATAAAAACGGAGAAAAGGATGATTTCGCGATACACCAGGCGGCCGGTAACGCACAGTCTTGAGATTCGTGGCTTATCCCGAAGCCACCTTGACCATCACCCTCTCCCAGAAGAGGTAGACGATGACTTCCTCCCCCAGCACCTCCTCCATGACCTTCAGGAAGCTGTCTCAACTTACAACAGcTCAGAGACGACGTCTGCAGCCTCTAACCGGTCAGACTCTCCAACGGTCACCACTGGAAACACAACCCGGGCCTGGTCTGGGATCCACAGCTACACAGGGACAGGCATCTCTACAGAGAGGAGCTCTGTCTTCTCCTGGGGCTATGATgAGTTTGACAAGGCTGCGTCGCGACAGGTGCAGCAAATGTTTGAGGAGATTGATGAGGAGCTTTACGAGGGGCGGGGTGGGGCGCATCTACTGGGGCTGCAAGATGAGTGTCATCAGTGGGCATTCAGGTTCCCTCACTTACGGATTCTGGGTAGTCAGCTGGTGTGTCCCAGTGACGAGGGCTTTCAGTGGTACGCAATCTCAGGGAAGGGGACTGGGACACCCGCCAGCACCACTGCAGCTGGACAGAAGGACAGCAGTAGTAGCAAGCCCCAGGATAAGGACAAGCCCGGCCACAGCACAGATCTGTGTGTGCAGGGGAGAAGGGCTGTGCTGTCCAGGCCCTGTGTGGCAGTTGACCACCCCCCTGGTACTCCCAGTGGATCCAGAGGTCATGACAGGCCCAAGGTGATCGAGGCTGAAGGCCTGATGGAGGAGTACCTGGCCTTTGACAGCAGGGACCTGGATGATGAGTGGGAGCGGGGGTGGGTGGGGGCTGGTCGGCGGAGGTACTGCCTGCCTCCTGTGTCTCCCTATCGCTGTCGCAGACAGGCGGCCCTGGACTTGCTCTTTGACGACGTGTGGCGAGAGCTGGTTGGCTGGATGGAGGAGCTGGTCCGCAGGCATTGGGAGGGCTATGTCTCAGATGATGAGAAGACTGCAGTGAACTTCAGCCCATCACAGTCTGATGCTGAGAATCCTTTCCTGCTTCTGTCCACACTTCCCACCCTTCTCCCCAGGCTAGGCCAGATCAGGGTGCCCCAGCTAACAGGCAGCCTGCAACCCCAGACCACAAAATCAAGGGTCTCAAAGCACAAGTCCAGACGGAAATCCAAAAAGCAGAAAATGCCATCCACTtCCAGTCGGGTACCAGTAGGGGCAGCGGTGACGCATCACAACCTCAACGACCTCATAGTGATCCACGGCATCCCCCTGCAGCAGAGGAACCTGGGCGTGATGGAGAGAGCTCAGGACCCTGAGGAGAGGGTGGTGGTGACCCATCGGCCAGGGTCCAGTGTGATTCCGTCCAGCAAGCCCCGTCCTCGCCGGGTGCTAGAGCAGagctcctcctccctgtcccgtCCGCCCCAGTCGGCGCTACGCCGTAACCCCCCCCCACGCACCCTTCTGCCCTTGGTTCCCTGCCTGACACAGTTCAGTGCCGTCGGCTCCATGGAGGAGGTCATCCGTGGGACACGTCTACCCACAGCCAGTGACCGCCTGGCCTCGCCTCTGATACCTCTGAGCAGGAACACACTCCTTCCCCCCATCGGCACAGAAGAAGCTGAACCCCCGCACTCTGGACAGCACTTCAGACCTACTCAGcGGCATAGAGGCTTGTCCAGTCGTGCCCATAGTGCTGTTAcagatgaagctggttgtttGCTTCCTCGGGATCGGCTTCATCAATTGGACGTATTCTCCCGTCCCAACACCACCCACACCTACAGGTCAGACACCCCTTACCGCCGCTCCTTCACGGTGCTGGACAACATTGGACAGGGGCGTCCTGGCAGAGAATCTTTGGGTACAGACTCTTTGGGCATCGGAGTGATGGGCATCAGTCTGGGCATCAGTCTGGGCATCAGCAGTTCCTCCTTCCTGGACTCCTTCATCCACCACCCTCTGGGCCACTCCCCCATCAAGGATGAGGAGGAGCCTGACACACAAACCCCTCCCCCAGCTGTACTGGTGCCTGTGTCAGTCCCAGCACGCTCCTATAGCCGGGGGGGCTTCACATCCCGCAGTAGCAGACCTGGGTTGTAGTCCCGTCAACCGGttgtcactagttaacacagccacaaagtcttaATTATCATTAAACCCCGCtcatttctacaatttctcttcttacaatatgattttaaacctaaccacactgctaaccgtaTGCCTAACTTTAAAGTGAAAAATAAAAAGCTATACATTTtttgccaattttgactttggcTGTGGAATTtggctttgtggctgtgttatcaaCCTCGGCTGCTTCCACCAACCACACACCTCAGCACGGCAGGATGCAAGGCCCTGCTGCCACTCCCAACGGGGCCTTCAACAACACTTTATACAACAAGGAACATTTCTACATTGTACTGTTAGGTGATTTTATTTGAtgctttttttgtttttctaGAGCCCTATTTTTGTATGTTGGAACTCTGCTTACCTGGCTGCCAAAGACAGTAACCCGTCTCATTAAACCTTCCTATCTGTATGTATGTTGGTATGTATATTGTTTATGTTCTCTGATCTCTATACTCTTAAATTCTTCTATGCAGGGAATGAGTCGTTCTATAAAAATGGTGGCTTTTTGACCAGCCAATAAAAAGTTTTTACAAATTAGTCATAAGTTAATGCCGTAACAATGTTAATGAAAATAAATGACAGCATATTATTTTTTGTATATTACATTAAAATGCTTGTGTTGCCTTTGTCACTGGTGTTCCCTATATTTTAATGACAATTAAGGCTTTCCAGAATGTAATTTGAGTATTTACTTTAAATATATAATCCAAGACGAAAAAGGTTAATGATAATAAATTATTTAAACAAAACATATTCTATAACACCAGTGACAAACCTTCAGACTGTTCTAGTAAAAACAGCAGGAACAGTAACCAGTGAAAAAAATCTGCCGAAAATATAGAATATCTAAGATGGTGGCCACAGTAGCTCAAACCACACTTCTTAAATTGTGAATAAATTACTTAATCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94592 lncRNA downstream 116181 76325641 ~ 76328227 (-) False ccser2a
TU94590 lncRNA downstream 116991 76324553 ~ 76327417 (-) False ccser2a
TU94645 lncRNA downstream 143929 76300236 ~ 76300479 (-) True G85852
TU94644 lncRNA downstream 144685 76299376 ~ 76299723 (-) True G85851
TU94626 lncRNA downstream 168787 76275375 ~ 76275621 (-) True G85834
TU94750 lncRNA upstream 9860 76462027 ~ 76462551 (-) True G85950
TU94751 lncRNA upstream 10415 76462582 ~ 76462892 (-) True G85951
TU94761 lncRNA upstream 22682 76474849 ~ 76475437 (-) True G85960
TU94869 lncRNA upstream 64084 76516251 ~ 76523481 (-) False G86063
TU94903 lncRNA upstream 110036 76562203 ~ 76575643 (-) True G86094
XM_021611807.2 mRNA downstream 44411 76329167 ~ 76399997 (-) False ccser2a
XM_036976270.1 mRNA upstream 13796 76465963 ~ 76467210 (-) True LOC118964475
XM_021612160.2 mRNA upstream 411312 76863479 ~ 76871869 (-) True LOC110529704
XM_021612139.2 mRNA upstream 419925 76872092 ~ 76930446 (-) False LOC110529688
XM_021612147.2 mRNA upstream 421653 76873820 ~ 76930446 (-) False LOC110529688
XM_021612130.2 mRNA upstream 424751 76876918 ~ 76930446 (-) True LOC110529688
TU94594 other downstream 44452 76367293 ~ 76399956 (-) True ccser2a
TU94659 other downstream 110272 76333468 ~ 76334136 (-) True G85866
TU93438 other downstream 915505 75528343 ~ 75528903 (-) True G84713
TU92810 other downstream 1471087 74972212 ~ 74973321 (-) True fank1
TU92060 other downstream 1871619 74572447 ~ 74572789 (-) True G83429
TU94870 other upstream 68918 76521085 ~ 76523481 (-) True G86063
TU94946 other upstream 154515 76606682 ~ 76608354 (-) True G86132
TU95290 other upstream 414737 76866904 ~ 76867598 (-) True G86448
TU96006 other upstream 1026436 77478603 ~ 77479939 (-) True G87090
TU98450 other upstream 2597644 79049811 ~ 79050491 (-) True G89418

Expression Profile