RNA id: XM_021612147.2


Basic Information

Item Value
RNA id XM_021612147.2
length 1799
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110529688
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76872092 ~ 76930446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTTCAGCATCATTTTGGAGAAGAGGGAAGCGGTAACAACCAAGTCTGCATCGAATGCCTGTCTCTAACAATTGCCAATGAATTATCTTCGAATTCCTATGTCTGCCAGTTGACATAGCCTAACCTATCACACGCACTGCACACCAGTTCTGCAAAGAAACAGGATATTCGCAGGCTGTGCGTTTTTTCAGCACCTGAGCATTACTGAGGCTGTTCACCCTACTGGATCATGGCACAGACCAACAGTGTGGGGAGCAATGGAGTAGCCGATGAATCACCCAACATGATTGTATACAGAAAGATGGAGGACGTAATAGCCCGCATGCAGGATGAGAAGAATGGAATTCCTATCCGCACTGTGAAAAGTTTTTTATCCAAGATTCCAAGTGTTTTTTCAGGTTCTGACATTGTACAGTGGATGATCAAAAACCTGAATATTGAAGATCAAGTGGAGGCCCTTCACCTGGGGACCCTGATGGCTGCCCACGGCTACTTCTTCCCCATATCAGACCATGTACTCACACTGAAAGACGATGGCACTTTCTACAGGTTTCAGACCCCCTACTTCTGGCCGTCAAACTGCTGGGAACCAGAGAATACAGACTATGCCGTTTACCTCTGCAAAAGAACAATGCAAAACAAAGCTCGTCTGGAGCTGGCAGACTACGAGGCGGAGAGCTTAGCGAGGCTACAGAGAGCATTTGCCAGAAAATGGGAGTTCATATTTATGCAAGCAGAAGCACAAGCAAAAGTTGACAAGAAAAGAGATAAGATTGAGAGGAAAATTCTCGATAGTCAAGAAAGAGCGTTTTGGGATGTGCACAGACCAGTGCCCGGATGTGTAAACACAACAGAAGTCGACATAAAGAAGTCCTCCAGAATGAAAAATCCCCAAAAGACAAGAAAGtcagtaTATGGGCCTCAGAATGATGTGCGAACCCACAGCCCCACCCACACCCCTGCCCCAGAGGCCAAGCCAGCCACAGAGGAGCAGCTACAGGACCAGATCAATTATTGGGGAGGGCAATTAGACAGACATCGACTGAAAATGTCCAAAGTGGCTGAGAGTTTGTTGGCCTATACAGAGCAGTATGTGGAATATGACCCCTTCATCACGTCGACCGACCCCTCCAACCCGTGGATCTCAGATGACACCGCAGTATGGGAGCTGGAGGCTAGTAAGGAGCCAGGTCAGCAGAGGGTGAAGAGGTGGGCGTTCGGTATCAACGAGGTTCTCAAGGATCAGGTGGGGAGGGAGCAGTTCCTCAAGTTCCTGGAGTCTGAGTTCAGCTCAGAGAACCTGAGGTTCTGGCTAGCGGTCCAGGAGGTAAAGAAGAGGCCCATCCGGGAGGTCCCGACCCGGGTTCAGGAGATCTGGCAGGAGTTCCTGGCCTCTGGAGCTCCCAGTGCCATCAATGTTGACTCAAAGAGCTATGACAAGACCACCCAGAACGTCAAGGACCCTGGACGCTATGCCTTTGAGGACGCACAGGATCACATCTTCAAGCTGATGAAGAGTGACTCCTACAGCCGCTTCATCCGTTCCAGTGCCTATCAGGAGCTGCTACAGGCCAAGAAAAAGAAAAGTAAGAACTTGTTTTGAAGGATTTTACATCCAGGGGAAATCCCTTACATCAAAGAGGCTGACCAACCTTGTGCCATCATGCTAAAATACAGCCACTCTGCAATATAGAGGACCATTTCTACGTCATTTCTACGTCATTTCTACATCATCGCCGTCTGCTTTCCACTGAGACGATGAGCAGGGCAGTACATCAGATGTTGCATGTCCAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94947 lncRNA downstream 264176 76608684 ~ 76609644 (-) True G86133
TU94903 lncRNA downstream 298177 76562203 ~ 76575643 (-) True G86094
TU94869 lncRNA downstream 350339 76516251 ~ 76523481 (-) False G86063
TU94761 lncRNA downstream 398383 76474849 ~ 76475437 (-) True G85960
TU94751 lncRNA downstream 410928 76462582 ~ 76462892 (-) True G85951
TU95340 lncRNA upstream 6195 76936641 ~ 76938757 (-) True G86492
TU95670 lncRNA upstream 91906 77022352 ~ 77022625 (-) True G86783
TU95650 lncRNA upstream 115030 77045476 ~ 77048351 (-) False LOC110529759
TU95648 lncRNA upstream 115046 77045492 ~ 77048351 (-) True LOC110529759
TU95685 lncRNA upstream 135952 77066398 ~ 77066950 (-) True G86798
XM_021612160.2 mRNA downstream 1951 76863479 ~ 76871869 (-) True LOC110529704
XM_036976270.1 mRNA downstream 406610 76465963 ~ 76467210 (-) True LOC118964475
XR_002474419.2 mRNA downstream 421652 76445649 ~ 76452168 (-) False LOC110529591
XM_021611938.2 mRNA downstream 421653 76444408 ~ 76452167 (-) False LOC110529591
XM_021611948.2 mRNA downstream 421654 76444408 ~ 76452166 (-) False LOC110529591
XM_036989878.1 mRNA upstream 117356 77047802 ~ 77084980 (-) False LOC110529759
XM_021612324.2 mRNA upstream 154428 77084874 ~ 77103340 (-) True LOC110529788
XM_021612370.2 mRNA upstream 173920 77104366 ~ 77118910 (-) False LOC110529797
XM_021612337.2 mRNA upstream 173920 77104366 ~ 77118911 (-) False LOC110529797
XM_021612355.2 mRNA upstream 173920 77104366 ~ 77118911 (-) False LOC110529797
TU95290 other downstream 6222 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 265466 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 350339 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 473864 76367293 ~ 76399956 (-) True ccser2a
TU94659 other downstream 539684 76333468 ~ 76334136 (-) True G85866
TU96006 other upstream 548157 77478603 ~ 77479939 (-) True G87090
TU98450 other upstream 2119365 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 2604312 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 2953091 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 2956229 79886675 ~ 79888180 (-) True G90190

Expression Profile