RNA id: XM_021612603.2


Basic Information

Item Value
RNA id XM_021612603.2
length 2180
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110529928
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77484619 ~ 77487187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAATGCATTTTACAATATTGCATCCCCATAATATAACGAGATGAGATGATATTTCCCACGCGTAGGGAACACTATATGATATGGCAGAGAATACAGCATTGGAGAGTTTTTACCATGACAGCTGAAGGTTATATATTGTGTGCGTAAAGGCGCGTAAAGGCTTGAAGCGCACTGTATTGTCAAAAAAATGACAGCTAAAACTATTGACAAAGTTTGGGTACCCACCAGTAGTTTTATACAAGACATTCAAGAGGTAATCTATTCAATGGAAGAGGAAATATCCGCATCATTGCCAGAGACGGGAACTGGGTTAAAAGTTGAGTCATATTGGAAACAGCACGACCAATTGGGTGAAACCAAGGGGGGTGATTGTTTTAGTGAAGAAAGGGGCACCCTCGAGTTTATTTACCAGGGCAACTTTACGCAGCCACCGCGCACTCAGGCTGTGGCATACACCGGGAAGGTCTCGATCAATTCTAGAGGTGTAGAATACTGGAATCCCGGGGGTGCCATTAACGTAGCTAGTGCTGACATAAGGGTGGCAGCTTCGTCCCCGGTGTCTATCTCGCCCTCGCCTGAACCACCAAACCTTTACGCAGGAACTGTGAGCTGCACCATGGCGCAGAGTCAACACGATATAAACCACATGTATGCTACGCCGTCTTACTCTTGTACCGGGGAAATGTACCAGGATCAATCAACCTACCTGGCAACGTCGACCTGCCCCATGTCTTATCCACAGCCGTCGTACTCATCCTATACATCACCAAAGTCGACAGTGGACAGCGCACTCTTAAACATCATGCCTGACTACAGCGGGTTCTTCCAGCCAAACTGCCAACGAGACATCCAGGCATTTCCTGACAGGAAAGCGTTACCATATTCACTGGACTCTCTGAGGGTTCCACCACCTCTGACACCTCTGAACACAATAAGGAATTTTACGCTTGGGGGACCTGCGATAGAGGGCCCTTGTCCACCAAATCCCTACAACACTTCGAACTTACCCCTGAGGCCAATATTGAGACCGAGAAAGTATCCAAACCTCCCAAGCAAAACGCCTGTCCATGAGCGACCATACCCTTGCCCAGCAGAGAGCTGCGATAGGAGGTTCTCGCGGTCGGACGAGCTGAGCAGACACGTTAGGATCCACACAGGGCACAAACCCTTCCAGTGTCGGATCTGCATGCGCAGTTTCAGTCGCAGCGACCACCTCACTACGCACATCCGGACACACACTGGAGAAAAACCCTTCTCCTGCGACCACTGTGGAAGAAAGTTTGCCAGGAGTGATGAAAGAAGGAGACACACGAAAATCCACttaagacagaaagagaaaaagtCATCATAATGACCCAGGCAGAATGGTTTTAAACATTCAGATAAATTATGTTTCCCTGCAGCACCAATTAATTAAATAATATCCAAATCAAACATTCACACTGAATTTAGCAGACTAGGGTTAATTAAGGTTGACTAATGCATTTTGATATATGGTGCTGAATGAATAACAACATAAACGGACAGagctatcacatttacattaggtATAGAATACATTTTTTCATAACTTAACTGTAAATGTGCACAAACACAAGTGCTCAGTATAGAAAGTGTTTCAATAGAGTAGGTGGGGAAATAGTCAGAGATGCTGAATAGCCAGCAAGGAGCAAGACTCAGCTCCAACACTGAGTGGTATCAGCCAGCAAGTAGCCTCACTTTTGCCAGTGTTGAGAGACTTCCCACAAGAGATGAGTGATGAGATGAGTGAATACCATGATGGGTATTCCTGCATTATAGCTGGTAAAGGAGTGCCATGACCAATATCACAGAGCTGAGTGGTCTGGCCAGGGGCATGTAGTTCCTGTATATTATCCTCACATCCAGTTTTGAGAGTGGGGGGTTAGAGTCCCATGTGTGTAAAAACTGGAAGCCCTGTACTGTCAAGAGAGACAATTAAGAACTGAATTGCTCaagttttcatttaaaaaaaaatctcctaTTACTTGTTGGATGAAGATGAAAGTAAAATCTGTGTAAGATCATTACAGGAAGTAACTAAGGAGAAGTACGTTCATTTGACATGCgtcatttgacatgtttttacacacacattGTTCTTTAACTGATTTGATGCTTCTTGCAATAAATGTAGAATATGTTGTCGTAGGTGACATA

Function

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071320 cellular response to cAMP biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0071371 cellular response to gonadotropin stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005488 binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09203 EGR1; early growth response protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96009 lncRNA downstream 693 77482511 ~ 77483926 (-) True G87093
TU96001 lncRNA downstream 11252 77471489 ~ 77473367 (-) True G87085
TU95994 lncRNA downstream 23320 77461045 ~ 77461299 (-) True G87081
TU95990 lncRNA downstream 33315 77447067 ~ 77451304 (-) True G87077
TU95987 lncRNA downstream 37994 77438836 ~ 77446625 (-) True G87074
TU96016 lncRNA upstream 5949 77493136 ~ 77493369 (-) True G87100
TU96027 lncRNA upstream 26130 77513317 ~ 77513986 (-) True G87111
TU96029 lncRNA upstream 30258 77517445 ~ 77517657 (-) True G87113
TU96049 lncRNA upstream 49822 77537009 ~ 77537875 (-) True LOC110529957
TU96057 lncRNA upstream 57993 77545180 ~ 77545382 (-) True G87140
XM_021612577.2 mRNA downstream 23959 77453710 ~ 77460660 (-) True rtkn2a
XM_021612553.2 mRNA downstream 127838 77352007 ~ 77356781 (-) True tmem26a
XM_036985839.1 mRNA downstream 170819 77148371 ~ 77313800 (-) True LOC110529831
XM_036985833.1 mRNA downstream 186982 77148371 ~ 77297637 (-) False LOC110529831
XM_036985950.1 mRNA downstream 206703 77148371 ~ 77277916 (-) False LOC110529831
XM_021612639.2 mRNA upstream 39244 77526431 ~ 77535457 (-) True LOC110529949
XM_021612649.2 mRNA upstream 48332 77535519 ~ 77542730 (-) False LOC110529957
XM_036986057.1 mRNA upstream 48332 77535519 ~ 77542730 (-) False LOC110529957
XM_021612662.2 mRNA upstream 119732 77606919 ~ 77623628 (-) True tbc1d12a
XM_021612720.2 mRNA upstream 208720 77695907 ~ 77735548 (-) True LOC110529991
TU96006 other downstream 4680 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 617021 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 876265 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 961138 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 1084663 76367293 ~ 76399956 (-) True ccser2a
TU98450 other upstream 1562624 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 2047571 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 2396350 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 2399488 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 2654372 80141559 ~ 80142157 (-) True G90382

Expression Profile