RNA id: XM_036986057.1


Basic Information

Item Value
RNA id XM_036986057.1
length 4398
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110529957
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77535519 ~ 77542730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCACTTTCAAAGCCGCATCGCTCGCGCTCACTCAATCTCCGAGTGCTATCACAAACTTTTCTCCAATCCTGGCGATTTAACGAGCTctttagatatatatatttttttaaaacgtTATACGTCATCTGCGAAGGTGGATCATGTAGTGTTCCAATATTTATAAAGCTCCGTGCGAACAATACATTTTGGAGGAGGAAAGAGACCTTTAAGGACGAGTTTCTCGTTGCTGTCAGCGACTTGGTTCCACGTTTAAGACAAGGCAACTGTGGACCTTCCGGTGGACCATTACGCGGGACACAGAGAGCAAGTTGCCGCTACCCAATGGGTCCATGGGCTGGCCGCTGGTGGGAGAAACGTTCCACTGGCTCTTTCAGGGGTCCAACTTCCACATCTCCAGGAGAGAGAAGCATGGCAACGTTTTTAAAACTCACCTTTTAGGAAAGCCTGTTATCCGGGTGACTGGTGCCGAAAACATCCGTAAAATCTTGCTTGGAGAACACAACTTGGTTTGCACGCAGTGGCCTCAGAGTACCCGTATTATCCTGGGACCCGACACCCTGGTCAACTCTATTGGAGATTTGCACAAGAAGAAGAGAAAAATCTTGGCAAAAGTCTTTAGCCGCGGGGCCTTGGAGACTTACCTACCTCGCTTGCAAGATGTTGTCAAGTCTGAAATTGCAAAGTGGTGCTCAGAGCCTGGCCCAGTGAATGTTTACGTCTCAGCCAAGTCTCTCACATTTCGCATTGCTGTCAGAGTCTTGTTGGGACTGAAGATGGAGGAAAAACGCATAGTTTACCTGTCTAAGATCTTTGAGCAACTCATGAACAACCTCTTCTCACTACCAATTGACGCACCTATGAGTGGACTCCGCAAAGGAATAGAAGCCCGGGAAATCCTACATGCGTGCATGGAGAAAATCATAGAGGAGAAAATGCAGAAACAACAGTCTGATGAGTACTATGATGCTTTCGATTACATGTTGATCAGTGCCAAGGAAAATGGAAATGAACTCAGCATGCAGGAGTTGAAGGAAACCGCGGTGGAGTTAATATTTGCTGCTCACTCAACtacagccagtgcctccacttcGCTTATTCTTCAACTCCTGCGGCACCCCGCTGTGGTGGAGAAAGCCCAGATGGAGCTGGAGTCCGAGGGTCTCGGCTACGAAGCACATAGCGCCCACAGATGCTCCGGCAAAGAAAATGGTCTGAAAGGTCCTCTTGCGGCGGAACATGAGGAACATCGGCCTCTAGACGCAGAGGACACCCTGTTGATGAATGGGAACGGGACTGTTAATTGCGCActggatgaagaagaagaagcacgGTGTTCTCGGTCTCATATTCCTTGTTTAACTTTGGAGAAACTGAGTCAGCTACGTTACATTGAATGTGTCGTCAAGGAGGTCCTGCGGTTTCTCCCGCCAGTGTCTGGAGGATACAGGACGGTGCTACGAACATTCGAATTGAACGGCTACCAGATTCCTAAAGGATGGAGTGTAATGTACAGTATCCGGGACACCCATGAGACAGCTGCAGTGTTCCAGAGACCGGAGATCTTCGACCCAGACCGCTTCGGGCCGGAGCGTGACGAGAGCAAGACTGGGCGCTTCAATTACATTCCATTTGGTGGCGGAATAAGGAGTTGCGTCGGAAAGGAACTTGCCCAAATGATACTAAAAACCCTGGCAGTTGAGGTGATTGGCACGTGCAACTGGACACTCGCCACGGAAACATTCCCCAAGATGCAGACGGTGCCAATAGTCCACCCCGTCAATGGACTGCATGTGCATTTCAATTACGCATAGCCAACTCCGATAGTTTAGAGATGTCATTGTGTTAttattaaaaacattaacattaagCTCATTAACTTTCCGCAATTGCAATATTAAGTTATTCAATTTGAATACATCAGCAAGAACCCTATGCTGTGAGAAACACGGTGGTCATTGTAGAGTGGAACCAATGCATGGTGCCAGTGGCCTGTGATGATCTGCTTATCGCCAAGATCGCCTTTTTACGCAATGGGAAAAGTGACTCCATACATTTGCTATTCTTCACGGACATCCGGGCGCCCACTTCCATAACAAAGCAAATCGAAAAGTGATAGCCTATATTTCAGCACCATAATGCAATATACAATGGACGAGTAGGGCTTTCCTCTCAGAACAAACATTATTTGTGCTCAGGACTGATTATAAATATCCGTCTATAATACGAAATTGTCTTTCAGATCTTGCACTTGGTCTCCACGAAAGACTTTCAGAAATACATTCCAAATGTATGTGTTTATGTCCAGTATGTAAGTAGATTGAAATGagatataggcctacatttatagGCTAAataagtgtatgtgtgtatgaaaTGAAGTAGTATTACAAATAAGCTTTATTTATAGAACACTTCGGTTAAGTCGGTGTACATATGGAATAATAATGAAGAGGCCTAGTTATTTATAATCAATGTAAAGCATAGACCGGTAAAACAAACCATAGGCATGGAGTATCGCTAATTATTTGATTATAAAGTCTATAAATCAAAATGCAATTATATAAACTTACCTAGAGAAAATAACCAATTATTATTTGTATTCTTCTTATTATTACATGTTCCATCATTATGAATAATCGTTTGTTGATTTTAAAGCATGATGGAAGCGCTGTGAAATGACCCGGTTAAGATGGATTCATGGAAGGAGATAGCACTTTTTCTCCTTTACggagtgtgtatatacagtatttgttCTATTgattgaatgtgtgtatttttgtgtagATGTTGCTCGTATTATCTATAGAACGATGTAAAAGGTAAATTacaaaaaaagtgtatttctGCCATAGAATAGGACATTTTACCATACAAAATGTGCATTTGCTGCCATCATGTTAACCACAATGTATAGATTCCCGTTCTATAAAAAGACCAATATGGACTTGTTTATAGATAAAATTGTTAAGGTTttgataatatgacatttgataAGTGTGCCAGTATTGTCACAGTATAAGCCTATACAATATATAAtgaaatgtgttgttgtttttaatatGAGATGCCAAAATATAGTCAATTGTAAGCGTAGTGTATAGCCTTAGTGGTTAGTTGGGTCTGTTTTCGTTCGCCAACTCATGTCATTGAATTCCATAACCACAAGAACGATTTGCATATCATTTGACAGGCTCCGCCCCCGAAGATAAATGGAACCTGAAAGGTTACACCTTCAGAGTGAACTCGGATTGCAGTGTGACCCTCTAGTGAACCATTTAACTCTGCCCTATTGACCCTCAGTTTAGGTGACGCTTTGTTAACTGTGCGTTCACGAGCAGTGACCACAACACCAATGATATCTCACAACATAATTTCCACACCAAAGAATTCTAGACCTATAGGTCACTATCTGACTTTCCTCCATAGACGACTGAAATTATTAATTGTAGGTAAGACACTTGATTTAAACCCTCAGACCACCCACGTTTAACAGAACTACCCCCTCCcttccacacacccacacacacacacacacacacacacacactcccgctatcttcctctctctctcgctctctcttaccAAGTTAAAACCGACAGTGTAAAATGACCCTTCTCAAATTACCTCCAAAAAGGTTGAAATGATTCTAAATTGTAGGCTATACCCTATAGGTTAATTGAGACATTGAAAAACAATGTATGAAATCCTGACGTCAATAGGCCTATAGATTGAGATAATGTATGATTATGCACTCAATTTGATTGTCATGATTGACAGAATAGACGACTGTGAAGATGATGGCGCGATCCTAATTATGAGTGGTAAAGGGCCCTGTAACTCGTCATTTGGTGGGCAGTGAACTTGGCGACGTTTTGGCACCAGAGTTCACACGGATGTCACGGTCCGTGTTGTAGGTCACAGGCAGGGCAACGCATAGAAATGGGACAGAGCGTCCCTGCCCCCAAATCTGTTGGAATCGCGCTGCGGTAATGGGTTTTAAACACAGGGTGCACAGAGAACGGTGATTTGGAGAGTGTTAGATGGCATCGCCATTTCAAAGTAATCTATTCATTAACAGTACACCCCGTAGAGTAAACTAAATACAAAGCATGAATCCGTTACCGCTAGAAAAATATAGGACAATACATTGATATTAATACAAAGTGAACACAGATGCAGCGCTTGTCCTAGCCTATTGACACATGTGTCAAGCCTGGATGTCCCCTTCATGGACACAAGTGTCTCTCGGAAGTATAATAGGCCAAATGTTCTATTAACATAATCAAGCCCGATCAGTCTCAGACTAGGGGATTCAGCTTGTAAACGAAGAACACGATATATTGGGTAACCGATTAGGTATTTTCCAAAGTAAAATGTTTGTATTCTATTGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96029 lncRNA downstream 17862 77517445 ~ 77517657 (-) True G87113
TU96027 lncRNA downstream 21533 77513317 ~ 77513986 (-) True G87111
TU96016 lncRNA downstream 42150 77493136 ~ 77493369 (-) True G87100
TU96009 lncRNA downstream 51593 77482511 ~ 77483926 (-) True G87093
TU96001 lncRNA downstream 62152 77471489 ~ 77473367 (-) True G87085
TU96057 lncRNA upstream 2450 77545180 ~ 77545382 (-) True G87140
TU96058 lncRNA upstream 2671 77545401 ~ 77545633 (-) True G87141
TU96252 lncRNA upstream 26599 77569329 ~ 77570010 (-) True G87322
TU96295 lncRNA upstream 103191 77645921 ~ 77647885 (-) True G87363
TU96297 lncRNA upstream 107232 77649962 ~ 77650213 (-) True G87365
XM_021612639.2 mRNA downstream 62 77526431 ~ 77535457 (-) True LOC110529949
XM_021612603.2 mRNA downstream 48332 77484619 ~ 77487187 (-) True LOC110529928
XM_021612577.2 mRNA downstream 74859 77453710 ~ 77460660 (-) True rtkn2a
XM_021612553.2 mRNA downstream 178738 77352007 ~ 77356781 (-) True tmem26a
XM_036985839.1 mRNA downstream 221719 77148371 ~ 77313800 (-) True LOC110529831
XM_021612662.2 mRNA upstream 64189 77606919 ~ 77623628 (-) True tbc1d12a
XM_021612720.2 mRNA upstream 153177 77695907 ~ 77735548 (-) True LOC110529991
XM_036989897.1 mRNA upstream 223214 77765944 ~ 77782971 (-) True sh2d4ba
XM_036986107.1 mRNA upstream 381806 77924536 ~ 78308976 (-) False LOC110529998
XM_036986111.1 mRNA upstream 381806 77924536 ~ 78308978 (-) True LOC110529998
TU96006 other downstream 55580 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 667921 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 927165 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 1012038 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 1135563 76367293 ~ 76399956 (-) True ccser2a
TU98450 other upstream 1507081 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 1992028 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 2340807 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 2343945 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 2598829 80141559 ~ 80142157 (-) True G90382

Expression Profile