RNA id: XM_021612720.2


Basic Information

Item Value
RNA id XM_021612720.2
length 2932
RNA type mRNA
GC content 0.49
exon number 21
gene id LOC110529991
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77695907 ~ 77735548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCGTTTCCATGCACCGCCTTCTAACAACATGGCGCCAGTTTACAGCGGTGCTGCCTTCCAAAGGGATGCCAAAAACCGCGCCGTAAGAGGAACATATGATTATTGAAAGTAACAGTTAACTACAAAAAGGATAACGGTACCGTAGTTCTTATAAATAATACTTGTGTTCTTGTCATCTAAAATTCTGGAATTTGCGTGCAGCAACAGTTTGTTAGTGACAGGTTGCGCATGAGCCCACCTGCCGGAGAAACTGTGACGACGGTGGACCATTATGAATCTCCTGAACCTGACAATATAGTGGGCGATATCCTTTAATAGAGACCTGCAATATTATGCATATTCTTCGACAGCGAAGTAACGCGTAAACGTCTCCGTAGACTCATTGTAGTGCAATAAATAACTTTCTATTTTAAAAAAGAAGAAGCTCACTCTGTAATGAATGAAGAGAATTGTGCGCAATCGGAGGTGGAAAGGGAAAAGCTCCCTCCAATATGCCATACGTCACCAACTATGGATTTGGGGCGTGGTGCGAAACAGCCCTTTCCCTCCCTCAGCACGTTCATCTCCTCCCTTAACCAGCGGAGGGAGACGGGAGGCCGGTTCAGCGTGGGCACAAACCAGTGTCTACCAGGTGGACGACATGGGAGGGAGCTACCTCCTATTTGCAGTGATGTGAGGCAGAAACAGAGGATCTCCATCGACACACTTCCCCCCGAGGTGAAGGCCCCGTTCCCCTCTGAACCTGTCATCCCCCTCCGCACTAAGACCATCAAAGAGTTCCAGGAAGACATGGAGCGAGCCACAACCTCAGGGGACTGGAGGGATGTGAGGGATTTCTACCTAACCACCTTTGACTCCTTTCTAGAGATCAATGCTGCCTTCAAGAGAGAAGCTAACGCCCCATTTAACACAATCGAGGATTCTGGAGTCAACTCAAAATTTTTGAATGCAGTTTATGATGCTTTACTCTGCACACCCCAAGACATCCAGAAATCAGTGTTGAAGGGAATCATTAACAGCCTATTAAGAGAGTGGAAAGGTCCCAGAACGAAAGATGACCTGAGGGCATACTTCATCTTAGTTCAGAACCCTCAGTATTCCAGCACCAGTACCTATGTGATCTATGCCCACCTACTGAGACAGATAGCTGGCCTGTCCGAGGCTGACCACCATTTCCTAGTGCACTGGTTTAAAAAACTGTCTCCAAGGCGTTTCAGGCAGCTGGTGGAGCGTTTTCTTCACTTCATCTCCACTCGTCTGTTACCTGCTCCTCCTGATGAACTGCCCCCTCTGACCAGGTGTTCCTGGTGGATCCCTGCTGCCACCAAGGTCCTCGCCCTCTTCAATGCAGCTAACAGCATATCCACGCCTCCTATCATGTCCTTCACGGACTTCTACAACATCACCTTGGaccacatcgacatcatggagcagtACCGCACCTGGCAGAGCCACGGCAACTCCAACAAGTTCTCTTTCTGCCAGTTCCCATTTATCCTGTCAACGGTGGTGAAGAAAGCCATCATCCAGAGAGACTCAGAACAGCAGATGATAAGCATGGCCAGAcaaaGCCTGGTGAACAAGGTCTCTCGCAGGCAGAGAGTGGACATGAACCTGTTGTTCCTCAACATCAAGGTACGACGGGCCCAGCTACTCAGTGACTCATTGGATGAGCTGAGCAGGAAGAGAGCAGACCTGAAGAAAAAGCTCAAGGTCACTTTCGTAGGAGAGGCGGGGCTCGACATGGGCGGCCTCACCAAGGAGTGGTTCCTGCTGCTGGTTCGACAGattttccacattgactatgGCATGTTCACCTACTTGAAGGATTCGCGATGTCATTGGTTCAGCAGCTGGAAATGTGACAACTACTCAGAGTTTCAATTGGTCGGGACTCTCATGGGTCTCGCTGTGTACAACAGCATTGCTCTGGATATCCACTTCCCTCCTTATTGTTACAAGAAGCTCTTGACTCCACCCATTGTGCCATGTGACCAGAATACTCCCATCGGCATGGCAACCGCCACCCTGGGCGACCTGCAGCAGGTCATGCCGGATTTGGCTCATGGGCTTGGAGAGCTGCTCTGCTATGAGGGCAATGTGGAAGAAGACTTCTATCTGACCTTCCAGGTTTTCCAAGAGGAGCTCGGGGTGGTCAGGTCCTATAACCTAAAACCTGGAGGTGACAAGATTCCAGTCAACAAACAGAACAGAAAGGAGTATGTTCAGCTGTATGCTGGTTTCCTGCTTAATAAGTCAATTTACAAGCAGTTTGCAGCCTTCTATCGTGGCttccacagtgtgtgtgcgtcagACGCTCTGATGCTGCTGAGGCCAGAGGAGGTGGAGATGCTGGTGTGTGGGAGCCCAGAGCTGGACATGAGCACCCTACAGAGAGCAGCTCAGTACGAGGGCTACAGCAAAGCTGACCTCACAGTACGctgttTTTGGGACGTGGTGCTGGATTTCCCCTTGGAGTTGCAGAAGAAGCTGCTCCACTTCGCCACAGGAAGTGACCGTGTCCCCGTGGGAGGGTTGGCCGACCTCAACTTCAAGATTGCCAAGATCGACGTGTccactgactgGTTACCCATATCTCACACCTGCTTCAACCAGATCTGCCTCCCACCTTATAAAAGCAGGAAGGAACTGAAGCAGAAGTTAACCATCGCCATCTCAAACGCAGAGGGCTTTGGCTTAGAGTGACTCAGTCTGCAGCTATGAGATTCACAGTAAGATGAGAGTAGGTGATTCCTTTCCAAATGTACTTTAGAATTACATTCCTTCAAAAATAGAATTTGATATAGACTACAtgaccaaacgtatgtggactcctgctcattgaacatctcattccaaaaccatgggcattaatatggagttggtcctgcctttgctgctataacagcctctactcctctgggaaggc

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K12232 HECTD2; E3 ubiquitin-protein ligase HECTD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96321 lncRNA downstream 10594 77684947 ~ 77685313 (-) True G87389
TU96297 lncRNA downstream 45694 77649962 ~ 77650213 (-) True G87365
TU96295 lncRNA downstream 48022 77645921 ~ 77647885 (-) True G87363
TU96252 lncRNA downstream 125897 77569329 ~ 77570010 (-) True G87322
TU96058 lncRNA downstream 150274 77545401 ~ 77545633 (-) True G87141
TU96358 lncRNA upstream 9879 77745427 ~ 77745798 (-) True G87425
TU96308 lncRNA upstream 25573 77761121 ~ 77763616 (-) True G87376
TU96787 lncRNA upstream 130528 77866076 ~ 77866309 (-) True G87832
TU96796 lncRNA upstream 144925 77880473 ~ 77880722 (-) True G87841
TU96820 lncRNA upstream 175389 77910937 ~ 77911147 (-) True G87865
XM_021612662.2 mRNA downstream 72279 77606919 ~ 77623628 (-) True tbc1d12a
XM_021612649.2 mRNA downstream 153177 77535519 ~ 77542730 (-) False LOC110529957
XM_036986057.1 mRNA downstream 153177 77535519 ~ 77542730 (-) False LOC110529957
XM_021612639.2 mRNA downstream 160450 77526431 ~ 77535457 (-) True LOC110529949
XM_021612603.2 mRNA downstream 208720 77484619 ~ 77487187 (-) True LOC110529928
XM_036989897.1 mRNA upstream 30396 77765944 ~ 77782971 (-) True sh2d4ba
XM_036986107.1 mRNA upstream 188988 77924536 ~ 78308976 (-) False LOC110529998
XM_036986111.1 mRNA upstream 188988 77924536 ~ 78308978 (-) True LOC110529998
XM_036986138.1 mRNA upstream 900736 78636284 ~ 78959395 (-) False LOC110532724
XM_036986147.1 mRNA upstream 900736 78636284 ~ 78959395 (-) False LOC110532724
TU96006 other downstream 215968 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 828309 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 1087553 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 1172426 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 1295951 76367293 ~ 76399956 (-) True ccser2a
TU98450 other upstream 1314263 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 1799210 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 2147989 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 2151127 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 2406011 80141559 ~ 80142157 (-) True G90382

Expression Profile