RNA id: XM_036989897.1


Basic Information

Item Value
RNA id XM_036989897.1
length 2587
RNA type mRNA
GC content 0.56
exon number 15
gene id sh2d4ba
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77765944 ~ 77782971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGGCACCTGCGTTTTGTTCTGATGCTGGATCCAGTATGATGGTGAGAGAACAGGGAAAAGGAACAAGGATCTGAACTCTACAGCCCAGTAGAGTCTCTGAGGACTGTATGAACACATAGATGGAGGGAATGACACTTGTCTTCAATATGAAGTGAACTGATAAAAGGGGTTCATGGCCCCCTAACACTCACCTAACCCCACCTTGGTTAACAGATCTCTTGGGTGTTTGGAAGCTTTGTGTTGCCAAGATGATGCAGCAGATTTTGAGGGACATGTACATCGATCCGGACCTGCTGGCGGAGCTCAACGAGGAGCAGAAGCATATCCTATTCTATAAGATCCGCCAGGAGCAGGTGAGGCGCTGGGATGAGAGGGAGAACCGAGAGAACCAGGAGAACCAGGACCAGGGAAAGAAGGGTGAGTCTGGGAGAAGTATCCAGTGGCTGCAGGGCTGCGATGGggatgtgtgggtgtgggtgatGGGCGACGCTCCTGGGGATAAGCCTTATGAGGACATCATCAAGGAGCTGATGGGGGAGAAAGCCAGACGGCAGGCTCAGCAGGAGGCCAAGGAGCTCTGGCGAACCAAAGAGGCTGAGATCGAGGAGAAGTTCCGGGATGCTATGGCGAAGGAGAAGGCCCGTTTTGTGGCAGGGAAGTGGAAAGAAGAAACAGAGGACAGGAAGGCTGCCAAGCAGGAAGAGGAACACATCCAGGAGTCTCTCAAGAaacgagaggaggaggagagacagcaaGGTGAGGAGGAGATAAAACgtgcagaggagaagagagcgagggagcTGTATATCTCCCTAGAgcaggaacagagaaggagtgaGAAGGATGACAAGGAATGGGAGGAGCAACTGCGGCGCTCTAAGATGGCTGACCAGGAGATGCAGAGAAAAGCAAGGCGGGCACGGGATGAGTACAAGCGCCAGTCCCTGCGGGCTATAGAGAAGGGCCGTGTGGCAGGGCTCAGTGGGCTGTTCCAGCAGGGCCCAGTGGTGGGGAACGAACCAACAGCAGCCCCCTTCAGGAGATACAGCAACGTGCTAgagtcctcctcctccaccacccaccGCCCCGGCCTCCAGCCTGCTACTCCTCCACTGTACCGCCGTAGACAGAGCCAAAGGCACAGCACCATTGTTACACAGCCACTGATGGACAGTCCTGCCTGGGTGAGAGCCCCCCGGCCCAGCTCCAAAGAGTGTGTTTTGCTGTGGTTCAAAGAAGAGCAGATGCCCAAACAGGCTGGCTATGAGCGCAACAGCACCACCATCGCCCCCTGGTTCCACGGTCTGATTTCCAGACAGGAGTCAGAGACCCTGCTGATGAACACAGCAGAGGGCTCCTTCCTGGTGAGGGTGAGTGACAGGATCTGGGGCTACACGCTGTCCTATCGCACGGCCGACGTCTTCAAACACTTCCTGATCGACGCATCAGgagactactacagcttcctGGGTGTGGACCAGAACCGCCACGCCACCTTGGCTGACCTCATCGACTTCCACAAGACAATTCCTGGGCGAGGAAAGGACTCCCGTATAGTTGGGGACGGCACCAGAGtGGTGGAGACTGTGGTCATTCTGATAATGTGGCGGTTCAAGAACGAACGCTGGAGGAACAGCAGCTACAAAAAGTCCACCTCATTGAGGAAAACTGGAAGCTACGAGGAGGAGCTAACAGAAGATGACGACATCAAAACCTACCTCTGTACGTTTGAACGGACAGCACTATGGGAAGGATGGCAAAGGCAGAAGTGGACCAGTCTGCTGGCCCCGTTCCTATCTGGGAATGCCCAAAAGGCGTATTGGGACCTGAACGATGAACAGGCGGCTAACTACGACGGACTCAAACAGGAGATACTCAGCCGCTACGGACAAAGTGTTCCTGGATCGCTTCCTCCGGGCACTACCCCACGACATGAAGAGGGCAGCGAGTCTAGGCGCGCCCCAGACCTTGGAGGGCTGAGTGGGAGCCAGGCCGAGTCGGCGACCCGTTCGGGGAGTCAGAAGGACAGCCCCAATGCTGTGTACCCTGAACCAACAACTGGGAGCAAACGGTTAATCAACCTGCATCTACGGGTCCAGAGTTGGAGGGGGGGGCTGGAACCTGACCCCCCTGGGGAACCACGGGAGGAAGAGCCCAGCCTCCCCCTCCTCGATTTCGAGGGGCCAGTCAAGATACCCCTTGGGGGCCAACTGAGGCGACAATTCGGCACGGCCCAGTGGGAGGATCCTAACTTGAAAGCCGCCGCAGTCCAAGTGATAGCAGTGGATGGACAGCTACTTCCAGGGGCGGAGGTATCCAAGGCAATCACCCTGGAGCTGTTCCACCTCTTTAGCCGGATCAAGCAGATCCGGACCTCTGTCTTCCACCCGCAGACGGAGGGGCTCGTCGAGCGGTTCAATAAAATGCTCAAACAAATGCTGCGGAAGGTCATCGAGCAGGATCTAATCctactctgtccgtgtctgatctgtgagGAGGTGATCACCACATCAGGAGGAGAGCTTCTGCAGGAGGCATGTAAATGTACAGTCTCAGCCACGGACTATGGGGGGCTCTtccaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96308 lncRNA downstream 2328 77761121 ~ 77763616 (-) True G87376
TU96358 lncRNA downstream 20146 77745427 ~ 77745798 (-) True G87425
TU96321 lncRNA downstream 80631 77684947 ~ 77685313 (-) True G87389
TU96297 lncRNA downstream 115731 77649962 ~ 77650213 (-) True G87365
TU96295 lncRNA downstream 118059 77645921 ~ 77647885 (-) True G87363
TU96787 lncRNA upstream 83105 77866076 ~ 77866309 (-) True G87832
TU96796 lncRNA upstream 97502 77880473 ~ 77880722 (-) True G87841
TU96820 lncRNA upstream 127966 77910937 ~ 77911147 (-) True G87865
TU96821 lncRNA upstream 128227 77911198 ~ 77911441 (-) True G87866
TU96863 lncRNA upstream 188433 77971404 ~ 77972389 (-) True G87908
XM_021612720.2 mRNA downstream 30396 77695907 ~ 77735548 (-) True LOC110529991
XM_021612662.2 mRNA downstream 142316 77606919 ~ 77623628 (-) True tbc1d12a
XM_021612649.2 mRNA downstream 223214 77535519 ~ 77542730 (-) False LOC110529957
XM_036986057.1 mRNA downstream 223214 77535519 ~ 77542730 (-) False LOC110529957
XM_021612639.2 mRNA downstream 230487 77526431 ~ 77535457 (-) True LOC110529949
XM_036986107.1 mRNA upstream 141565 77924536 ~ 78308976 (-) False LOC110529998
XM_036986111.1 mRNA upstream 141565 77924536 ~ 78308978 (-) True LOC110529998
XM_036986138.1 mRNA upstream 853313 78636284 ~ 78959395 (-) False LOC110532724
XM_036986147.1 mRNA upstream 853313 78636284 ~ 78959395 (-) False LOC110532724
XM_021612803.2 mRNA upstream 1297783 79080754 ~ 79092871 (-) False LOC110530032
TU96006 other downstream 286005 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 898346 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 1157590 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 1242463 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 1365988 76367293 ~ 76399956 (-) True ccser2a
TU98450 other upstream 1266840 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 1751787 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 2100566 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 2103704 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 2358588 80141559 ~ 80142157 (-) True G90382

Expression Profile