RNA id: XM_036986111.1


Basic Information

Item Value
RNA id XM_036986111.1
length 6512
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110529998
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77924536 ~ 78308978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGGTGCAGcctcgtttctctctctcacttccctccctctctgtctttctctccctctcgctctaccAGTGTGCACATTCTGCTCAGTCcctgcttttttctctctctctcatttgctctccctctctctctctcagcatcggCAGCAGCAGGGCAGGGAAGCAGCTGTCTCCCTGATTCAAATACCAGAGCCACCGGTCTGCTGGATCAGCATCCTTGGCTAAAACCACAGGAGGGTCAGGCTGTAAAGCCGAAGAGTCTGTTGTGGAGATCTCTAATCATCCTGAAGCAATCCCTGGAGAGACAAAAACAGCAAAAACTGCATCAAATCCCAACATTGACTGGAAGGCTGCCATTCCTCATACAAGGACTTGAAgtagaggaacagggagaggagtggTACAGGGTGGTTTTCAAcggctccctctctctttctacatctccTTTACTGTCTTTTTCTGAGAGGATccttatcttctctctctcttctctttttctcAGTACGCAAATGTAGTTGGCGGATAAGGGACAGGTTTCTAGCTCTCTGCTGCATTAACAAGCAGTGCACAGACACGGCGGGGCAGAGAGTGGACAGCTTGGGGAACCTGAGCTACGgtaggagaggaaggagacaacGCATCGCAAACGACAGAAACACCCTTATTCTGCCACCATTCACccatccttttctctctctatctttaagCTCCAAGGTTGTTTTTTCTCCTCTTTGTCATCAATGGATTCTGTATTTTTTCCCACTGGAGAATAGCAAACAACTCAGTGCTGGGAGTTGGCTTGGTTTTGCTCCAAAACTGAAGAAAAAAAGCATAAAAAGAGAGTACCTTTGTGGATGTTGTAGAGAGCGGGTGGTCTGAAGAGGGAGCAACAGCGCACCCAGGGAAAATCTATTTTCTCTCTGACGGGAGGGACAGGTTTCTGAATCTGGGGCTGAGAAGCTGACTCAGCTAAGGTGAGATAGCTGCAGAAACTCAAGGATCCTGTCTGCCTTGCCTACGTACTGTAGGTGAGGGATTCAGAACAGCCTCTGTAAGTTTTTCTCATCAGCATCAATAACTCAAACGCCCCATCTTGGAATATTGACCGAGGGAATGAGAAAGGGTGTGAAATAAAGAGGGCTATTCTATTCTCCTCTTCATCTATTTTGTCTGGATCGTCCTCGGAGTTGGAAGTCTTGGTCGCTTTTGGGCAGGATTTCAGTTGGACTAAAGATCATTCCAAGTTCCAACGCATCTACATCGGCTTTTTCCACCTCTGTTGTGCATctctgagtgtgtctgagtgtgtttgtttgtacgtatctgtatgtgtgtgttactgtgtgtgtgtgtgtatatgcgtttGTGAGCATCTTGTTGCGTGTTTCCTTCTTGATGTCCAGCATTGTCGGTTGCCATTCTGCCTCGTGCTGCCCATGCCCGTCACGCGCCTGGCCCCAAGGTTAACCCTTGCTAAGCCGCGTGCAGGATGAGCGAGAGCTCCGGTGCAGTCACATCCGGGGCGGTGATCCTGGAGGAGTGTCCAGAGGGGAGTGGGGAGCGAGAGCAGGTCCAAGCCCAAGAACCAGGGCGCCTGCGCTGTGGAGGCTGCACCCTGTGGCCCCGCCAGCAGACATGGCTATGTGTTGTCCCTCTACTCATAGGCTTCATTGGCTTGGGACTAAGCCTGATGCTGCTCAAATGGATTGTGGTGGGCTCTGTTAGGGACTACGTGCCCACAGACCTGGTGGATGCCAAGGGTATAGGACAGGACCCTATgtttcccccccatctctccaagCCCAGCGCCTTGCCTAAGAACTCAGACACCACCAGTACTACCACCACGGCAACCATTACTACCGTGGCCAACCccaccacaaccaccatcacGGCAGTAAGGGGCAGAACTCGAACTGTCGTCGCCAACCACCCTGGTGGCACCACTACTACAGCCAGGGTGGGTGGTGCATCAGGCAGCCAGGTTACACCTCGCAGCACCACACAGCGCCAAGGCAACTCTGGGGGCGGAGGACCACAAGGCCCCCTTATTACCACAACCACCGCCGCACCAGTCGCCGCCTCCACTTTTACCACCTCCAGTCCTAAACCTTCTAACCCCACTGTGCTGCACGACTCCACACAAATGTGGACCCATGAACACACAACGGAGAGGCCTGCCTCCACTCCCACATGGACCCATGTGAACCGAAAAACACCATCACCCACCATTCCTCCattggtctcagagcatttcaagCAATGTCACGAGAAGGACCTGGCCTACTGCTTGAACGATGGAGAATGCTTCGTCATCGAGACGCTGAGTGGACCACACAAACACTGCAGGTGTAGAGAAGGCTACCAGGGTATACGCTGCGACCAGTTCCTGCCCAAGACCGACTCCATCTTATCTGATCCAAATCACTTGGGCATTGAGTTTATGGAGAGCAAGGAGGTGTACAAGAGACAAGTGCTGTCAATCACCTGCATCGCCGTGGGGATAAGTGTTCTGGGCACGCTCTGTATGGCTCTCTACTGTCGGAACAAGAGACGCagggaaaaactccaggcccaCTTGAAAGAGAGCCGCAGCCTGAAGAACTACAGCGCCAATGCCTCTGCCTTGGAGTCCAAACCCGGCCTGAGGCCTAACACGGGCCTGCAGCTGCAGAATTATTGTAAGAGGTCCTCCCAGCCACATGAGGGAGCTGTCTGGGAGTCCAGCTTTGCCCAGTGCAACGCCACCCCTACCAACAACTCCAGTGGTCCAggcagagaaaaaaaatacagAAGCGGCTCCTTGTCTCACAGTCCAGACCAGAGAAGTAGAGCCACCCATTGGTCAGTACCGCGTAGAACTCTGCCTATACCCAGGGGAAGACTAAATCCAAATGGTGGATCCAAACATTCTGGCCCCGCCTACCAACACCTCCAGGAGTTGGAGTCGTCTGAGAGAGAGGTTGAGTCCTTGAGAGGGTGCAATATTGTGAGGGCCGGGAGCGACCCGCGACAGGATGCCTTTCTAAATATGCAACCCCCCATGTCGGTGGAGCAGTCGTGGGAGAGCAGGGTGGAGGTGCGCTGCTGTCCTCTGGACCAGGGCCTGGACCATGACGTCTCTACTTCCACCTGGAGCCTCAGGCGTCCCAAATGTCCAAGCcgctcttcccctcctcctttccGGACCTGCTCCATCCCTATCATCCCCTCTGTCCAGGGCCACAAGGACGAGGTCTCCTGTTTGCAAACAGCTACTGGCTCAGCCACCTGCAGCACCATGCCCAGTAAGGAAGTAGGAGGGCACTCCCTCATCATGCTGcaccccacctccacctcctgctcctcctctattGGGGGCCAGCAGCAGGACGAGGTGGCCCTTCTCCTAGAGGAGGCTCAGGAGCATCTCAGGGCTCTTGCCCACAGGAAGCAGGAAGACAGCGTCGGCGCCACCCCTCAACTGCCCAGAGAGACTGTATGCTTCCTGACACTCAATGGTGGAGGAGCGGGGGGTTTGAGCCCTAATGGACCCACTGAGACCCAGTTAATGAGCCCTAGAGAACCTCATAGAGACTCAGCCCAGCCCTGCCAATGAGACAACGAGGTCTGTGCCCTAGCTTCCTGTCTGGATCTACAGTAAAACAACTGTAGTGTCTTGAAGTCAAGACTGTAGAGAGCTCTGCATCAAAGGGATGAGATTAAACTGAATAGAGAAAAATAATATCATGGAATAAACAATGTGCATACTGTATGGAAGAATGAACAGAGGGATGGTCTatggagtgatgaagagagaaatTATGTATATGCATTTATTTAAATGAGAAGCTTCTTAGACAAAAGAAACCAAATAGTCTGTCATCTCCATGGTGTttttaattgtaaaaaaaattatatataaatatatatggatATAAATATATGGAATTAAAAAGGTGACCAAGTTCAGTTGAGGAATACAGGAATGATGTACCGTCTTTCTTTTTTTGTAAGAACTCCTCCACATTTTTCAGGCTTGGAGCACGTTTGTGTGGACCCCATGCACCCTTACCCCTTCTGTTTTGCTACCTGGTGTGAACCGACGATGCAGTTAAACATGGCTGCCACAGCAACAGTATCTACTGTAAAACAACCTCTCAACTACCATTGTGAGTCTACCCAGCCAAGGATTATAACAGTCCCCCTTGCCTTGGATATACCACAGCAGTATATTGAAGAACAATTACAGAATGATATAGAGAGACTTTTGCCGATAAACTACCCCAGGTTGACCCTGTCACTGGCTTGGGACAGCAGGTTGATAAGACAGGCGTGATGCTAACACGGTTGGCTAGTTTGGTGTCTTATTCCTTTTTTGTACGTGAGTGGAATTCCTCCTCTGCTGACCAAGTCGTTTAGCATGggtgttttttttccctctgtctAACCCCACACAActctgagtacacacacacacacattccctcaGCACACAACGACGTGTACAGGTGTGTTGGGGGTACACAGCAGGGATGGAGGGACCAAGGATAATAGGCCGGCGCAAGTGGAGGAGTTTCTGTTTTTTAGTTTCAGTTTGTTCGTGATGAACAATCAGCTGCTTtctggggaaggggaggggggagacagtagAGGGGGGTTGAAGAAAAATGTGTTTGTGGTACCTGTGAAGTGGGGACTTcaatttctgttttgaatttagAACCAAATGTTGGGGGGAAAAAAAGCATAATGGAGGTTTTgcagattatttttattttctatttcattttcaatggttctgccccctaccccacccacccactaACCTGTGAAATTGTGCATGCAGATAATATTTGTTTTCAGATTAACACCAATATTCTCTAGTGAGTTGCTGATTTCACTCACAATGTTTGGAATTCCACAATCAAATAACCTTTCATCAGAGGTTTACAAGCAGAGCATAGCGGTGGCCAGGGCATTGGTAGGTAGATAAGGAGGTAAAGGCTCCATATTGCCAACAACCCTTTCAgaggttttttttttaaatgatctccACAATGAGGTCAATGTAGCAGTAGTAATAACCATTGGAGGTTTCCAGATAAAAGCTAACTATTTATGTGTAGGACATATCCACTTGATGCCAAACAAGCTAAATGAATCGTGCTGCATGATGTACTTCATGCATCAACGACCAACAGTCACATTTGGGTCGTCAGACATCAAGTGGAAATGTGCCATTATCTGTGAACGTCCAAAGCGTATTACTTTACCTGAAACCATTTTCAATGCATTTTCAACTGTTGGTCTTAGAAATCATACATGCTCTCTGTACATCCGCCCTGCTGAATGGTTTTTGCAGTTCTGAAAACCAATTTAAGTCGGGCATCTCTCGTTTCCACTCTGAACATCTGAACACCACATTACATTTGCCAGTAATTGAACACTGTCTGCTACACTCCACGTACTTTCCGTTAACTTTATCAGAGAAGAAGCAGTGAAAAGGGGTCAGCCATATGACCGCCTGTCTTGAAATGATTAACAAACTCATTGACCTTTCCTGCAAATGCCTCAAGACTAGGGTGAGTCTAGGGTGAGACTTTCTATATTAGGTCCTCATTTTTCCAGTTTCTGTCTATACATGTGTCTGTTTGTGAATCTATGTGAAGGCTTATGGATTTCTGAGAGTAcgtgttttatttttcaaatcAGATTGCtcattggagtgtgtgtgtgtatatatgtgcgtgtgtgtgtttgtacatgcgtgcgtgtgtgtgtgcatgggtttGTGTGTGCGTGACTATTCACATGCATGTGGTTATATAAGTTAATGCAGTATATACACATGGGCCCATACTGTATGTCCATGTCTTAGTAGGAGATTTTGCTCAGCTGGACAGTGgacagacagcagtggagaggttAGCTGGTTGATGGCAGGGTTAGACCATACAGGCCAGACAGATAAGAGACCAGCTTGATCCACAAAGACCTCTGACTGCCAGGGAAAGCAACCCCATCAGACCGTGGCAGTGTCTACTATCCCCACAAATGGCTGGAGCAGTTTATAGCCAATGCTAGTGATGCAGAGCCTTTTATCCTCTACCCTGATAAATCAGTTTGTTGTGAGAGTTTGGGGGAATTATACTTTGTCAGGTTTGTTTTTCTGAGACAAATCCAGTTTGGGTTGTGGGGAGGGGGGTAAAAGCATTCCAAGGTGAaatctcacagcaggaaaatgatTCAGCACTGTTCATTTCAATTTTAAAAGGCCTGTGTTTCTTAGTCTGAAGTTTATTCAGTGCTGTGCGTTGAGGCAGAATAAAAAGTTAATCCCTGGTGACGATTCTGAGCCAGTGGATGTGTAAACCTCTCTGTAAAGCTGATCTGCCTTCATAGAGAGTGACGGGGCAAGGTAAGAAACAATCCACCATGGCTCATTCTTGTACTTttacctactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96821 lncRNA downstream 13095 77911198 ~ 77911441 (-) True G87866
TU96820 lncRNA downstream 13389 77910937 ~ 77911147 (-) True G87865
TU96796 lncRNA downstream 43814 77880473 ~ 77880722 (-) True G87841
TU96787 lncRNA downstream 58227 77866076 ~ 77866309 (-) True G87832
TU96308 lncRNA downstream 160920 77761121 ~ 77763616 (-) True G87376
TU97163 lncRNA upstream 29981 78338959 ~ 78339351 (-) True G88198
TU97169 lncRNA upstream 36235 78345213 ~ 78345557 (-) True G88204
TU97177 lncRNA upstream 40990 78349968 ~ 78350180 (-) True G88212
TU97242 lncRNA upstream 80604 78389582 ~ 78389789 (-) True G88274
TU97247 lncRNA upstream 83178 78392156 ~ 78392431 (-) True G88279
XM_036989897.1 mRNA downstream 141565 77765944 ~ 77782971 (-) True sh2d4ba
XM_021612720.2 mRNA downstream 188988 77695907 ~ 77735548 (-) True LOC110529991
XM_021612662.2 mRNA downstream 300908 77606919 ~ 77623628 (-) True tbc1d12a
XM_021612649.2 mRNA downstream 381806 77535519 ~ 77542730 (-) False LOC110529957
XM_036986138.1 mRNA upstream 327306 78636284 ~ 78959395 (-) False LOC110532724
XM_036986147.1 mRNA upstream 327306 78636284 ~ 78959395 (-) False LOC110532724
XM_021612803.2 mRNA upstream 771776 79080754 ~ 79092871 (-) False LOC110530032
XM_021612809.2 mRNA upstream 771776 79080754 ~ 79092872 (-) False LOC110530032
XM_021612818.2 mRNA upstream 771776 79080754 ~ 79092872 (-) False LOC110530032
TU96006 other downstream 444597 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 1056938 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 1316182 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 1401055 76521085 ~ 76523481 (-) True G86063
TU94594 other downstream 1524580 76367293 ~ 76399956 (-) True ccser2a
TU98450 other upstream 740833 79049811 ~ 79050491 (-) True G89418
TU99200 other upstream 1225780 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 1574559 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 1577697 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 1832581 80141559 ~ 80142157 (-) True G90382

Expression Profile