RNA id: XM_021612818.2


Basic Information

Item Value
RNA id XM_021612818.2
length 4226
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110530032
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79080754 ~ 79092872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGAAGAAAAAGATCGGATTACAAGATGGCGGTCTGTGGACGATAGTGAAGAGGCCGTCGTAGTTGTTTTCAACGGTGAATTTTACAGTTCGATAGATATCCTGCTTTCTgcgggtaaaaaaaaaacaatcagcCGCGTAATATGTTCATTAATTAGCACATTATTGTAAATCATACTCAGATGTATGTCTGGGACATGCGGGTAGAAACACGTTTGAAGCTCGGGGATAAGAACATAGCTAGACAACTATTTTAAAGATCGGGTGAACTAACGTTAGTGTTGGCTTGCTAACGCGTTAGTTTTTCCTCAAGGTAACTATGTCGGATACTCGGCGGCGTGTGAAAGTATACACGCTGAATGAAGACCGACAGTGGGACGACAGGGGCACAGGACATGTCTCGTCTACCTTTGTCGAACGACTAAAGGGAATATCATTATTAGTTCGGGCCGAATCCGACGGCTCACTTCTTCTGGAGTCTAAAATCAGCCCAAATACTGCATATCAAAAACAACAAGATACTCTGATCGTGTGGTCTGAAGCAGAGAACTATGATCTGGCTCTGAGTTTTCAGGAAAAAGCTGGCTGTGATGAAATCTGGGAAAAGATTTGTCAGGTGCAGGGAAAAGACCCTGCGCTGGAGATCACCCAGGACCCCATCGATGAGTCTGAGGAGGAGCGCTTCGAGGAGATGccagagaccagccacctggtGGAGCTGCCTCCATGCGAGCTAGCCCGGCTGGAGGAGATCGCTGACCTTGTGACTTCTGTCCTGTCCTCGCCCATCCGCCGGGAGAAACTGGCCCTAGCCCTTATGAGCGAAGGTTACATGAAGAAGCTACTGCAGCTCTTCCAGGTGTGTGAAGACCTGGACAACCGTGAGGGCCTACATCATCTGTATGAGATTGTGCGTGGCGTGCTTTTTCTCAACAAGGCGGCTCTGTTCGAGGTCATGTTCTCAGACGACTGCATCATGGACGTAGTGGGCTGCCTGGAGTACGACCCGGCGCTGGTGCAGCCCAAAAGGCACCGCGAGTTCCTCACCAAGACGGCCAAGTTCAAGGAGGTGATCCCCATCACGGACTCAGAGCTACGGCAGAAGATCCACCAGACGTACCGTGTGCAGTACATCCAGGACATCATCCTTCCCACTCCTTCTGTCTTCGAAGAGAACTTCCTTTCCACCCTCACATCCTTCATTTTCTTCAACAAGGTGGAGATAGTCAGCATGCTGCAGGAGGATGAGAAGTTCCTCACTGAAGTCTTTGCACAGCTAACGGATGAAGCCACAGAGGACGGTAAAAGGAGGGAACTAGTGAACTTCTTCAAAGAATTTTGTGCTTTTTCACAAACCTTGCAACCGCAAAATAGAGATGCTTTCTTCAAGACTCTGGCGAATCTAGGCATTCTTCCTGCTCTTGAAATAGTCATGGGGATGGACGACCTGCAAGTGAGGGCTGCAGCCACAGACATATTCTCATACCTGGTGGAGTTCAGCCCCTCCATGGTCCGAGAGTTTGTTATGCAGGAGCCACAGCAGACTGATGATGATGTGCTGCTGATCAACGTGGTGATAAAGCAGATGATCTGTGACTCGGACCCTGAGCTGGGGGGTGCTGTGCAGCTGATGGGGCTCCTACGTACACTGATTGACCCAGAGAACATGCTGACGCCCACCAATAAAACGGAGAAGACCGAGTTCCTCAGCTTCTTCTACAAGTACTGCATGCAGGTCCTAACAGCCCCTCTATTGGCCAACACTGTAGACGAGAAGAAGTCCAAAGCTCTGCAAGAGGGATCCACCAAGATCAACCCAGTGTGTCCTGATAATTTCCAGACAGCTCAACTCCTGGCTTTGATTCTGGAGCTGCTGACATTCTGTGTTGAGCACCACACGTACCACATAAAGACATACATCATGAACAAGGACCTGCTACGACGAATCCTGGTGCTAATGAACTCTAAACACACCTTCCTGGCGCTGTGTGCTCTGCGCTTCATGAGGAGGATAATTGGGCAGAAGGATGAGTACTACAACCGCTATATTATCAAAGGGAACCTGTTTGAGCCAGTCATCAACACTCTGCTGGACAATGGCACTAGATACAACCTCCTAAACTCAGCCATCATCGAACTCTTTGAGTTCATCAAAGTTGAGGATGTTAAGTCCCTGATAGCACACATCATAGACAACTACTACAAAGCACTTGAATCCATTGAATACGTCCAGACGTTCAAGGGCCTAAAGGGCAGATATGAGCAGGAGAAGGACCGACAGACCCTGAGACTCAACAGATATCGTAGGGATGCCCGAACGCTGGACGAGGATGAGGAAATGTGGTTCCATGAAGATGAGGATGATGACGAAGGAGAGGCTGTTGAGAAAAGTAGGCCAGAGGAAGAGTTCCCAGAGAGCTACGGAAAGTATATGGAAGCAAAAAAAGGGGCTGCCAACGGTGCCAACGGAAAGCCAGCTGCCTCACACGCCGCCTCAGCCAGTCCCAACGGCTCCCCAGCCAAGTCGGACGCGACACCCGGCACCCTGGTAGTCAAGACTGCGATGGTCGGCCTTGTAGACTACCCTGACGACGAAGACGAGGAGGAAGAAGACGAAGAGCAGTCGCCACGGAAACGTCCCCGTCTGGGCTCCTAAGCCAGTGAAatcgtctggtcttggtcagctGTGCCACAGTCACAGTccactggacagagaccactCCCACCTTCCTACCCTGCCCCCCCTGCTCCTACGTCCCCATATCTGGCCTGTGGACCAGAGAGGTTGAACAGTGCAATGGTTTCCCTGTTGGTCCAGCAGGGGCGCTGCACTTCACCCAAACCTCAGTCGCTCTACAGAAGGGGGAGCAGGTGCTAATGGGAGAGCCAGTCAGGCTAGCAGGACTAGCCGCTTAGTAATGGAAGCTTGATTGGCTGACCCTACAGAACTGTTCCTTTGGGTTGGGTGGAGGGAACTAGGCAAAGAGGGGGGATaagtaacaacaaaaaaaaacgaacCTACAGAAAACAAAAGTTTCTTAGTTCTGAGGAGCAGGACTCAACTGTCGAAGCTGGGGCTGCATTGCCGAGGCTCACACACAACTAGTCAGGAATCCACTATTCATGAGTTTAAAAGTACTGTACAGGTTGTTGTTTTCATCATATGCCCCTTAAGTGATTTTAAAAAGGGGAGAGCTATACCTGCcagtgtattttttttatttttttgctgcaCAAATGGTGGGACCACTGTTCACCCTTAATTAAATTCATTGTAGAAAGCAATTCTGGTATTAAACTGCAGTAAAGTCATTTTTGCAGCTCACTGAGAATGTCTGAAGTTTGTGTATTCAGGGGCTTTGACTCACTGGCTCCAGCAGGTATGTATCTTGTTTTAAAAGAACAGAAACCCTTCTCAGTGGTACATACTACCGGTGATCCAGTTCAGTACTCCTGATGGGTTGAGTTTGTTGCTAGCACACATCCTGTTGGTCAGAACATATTTCAATCCAAAATTGCAGCAGTGGTGGCTAGACCAGCTACTGCCATTTATATAGACCAGGGATGCCCCCTCATCCCCATGTTTGTTGTTGAACAGTGtgggtctcaatttactgttgggttagaatagtagaatacactagGTGCAATTTTGTTGCATCAGTAGTTTCTcttctgacagtcactcaattagcccatgttgacaattggtaaattagtctaggccagctatctaaacttgtggTCATGGTTGAATTACCTACCGGGTGCCCCATTTTAATATATCTGATGATCAACTGCAAACGCATCCACCCTTTTACAAAATGTGTAGATAGGGGCTGCTAAATTGTTTTGCTTGCAAGGTGGGTGTAACAATTTAGCTTCGGCACCCAAAGGGCCAGGGCCTACTCTGACTGAATCtgtgggtatggatgtgtgtAAGCAGACCTGCGAGCCGTTGCGGCCCCGCTTGTTCAGATTTTGGGTGGCCCCTACCCCCAGCTATTGCCTATCCCTGATAGACGTAGTTTGAGATGTCAGGAAGAGGTGGAAAGCATTTGTCGGAGTACGTACAGCATCTGTGAATGCCCAAATGTAATTTCAAATGTCTAGAGGTTTTTCTCCCTGAAAAATGTGTACAAAGTGCATTTACTACCACTATCTCCATTCTAACATTTTGTATACAGTTGATACGTTTTCAGATTAAATGTGACCCTGGCATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98471 lncRNA downstream 2891 79072680 ~ 79077863 (-) True G89436
TU98026 lncRNA downstream 179736 78899319 ~ 78901018 (-) True G89021
TU97986 lncRNA downstream 259864 78820559 ~ 78820890 (-) True G88982
TU97894 lncRNA downstream 399438 78680847 ~ 78681316 (-) True G88899
TU97856 lncRNA downstream 440720 78636290 ~ 78640034 (-) True LOC110532724
TU98555 lncRNA upstream 133829 79226701 ~ 79226908 (-) True G89509
TU98556 lncRNA upstream 134112 79226984 ~ 79227192 (-) True G89510
TU98569 lncRNA upstream 152323 79245195 ~ 79245480 (-) True G89523
TU98571 lncRNA upstream 171102 79263974 ~ 79264191 (-) True G89525
TU98572 lncRNA upstream 171339 79264211 ~ 79264830 (-) True G89526
XM_036986138.1 mRNA downstream 121359 78636284 ~ 78959395 (-) False LOC110532724
XM_036986147.1 mRNA downstream 121359 78636284 ~ 78959395 (-) False LOC110532724
XM_036986111.1 mRNA downstream 771776 77924536 ~ 78308978 (-) True LOC110529998
XM_036986107.1 mRNA downstream 771778 77924536 ~ 78308976 (-) False LOC110529998
XM_036989897.1 mRNA downstream 1297783 77765944 ~ 77782971 (-) True sh2d4ba
XM_036986192.1 mRNA upstream 267 79093139 ~ 79109309 (-) False LOC110530078
XM_021612876.2 mRNA upstream 267 79093139 ~ 79109337 (-) True LOC110530078
XM_021612916.2 mRNA upstream 114630 79207502 ~ 79209199 (-) False LOC110530099
XM_036986226.1 mRNA upstream 114725 79207597 ~ 79208807 (-) True LOC110530099
XM_021612927.2 mRNA upstream 116992 79209864 ~ 79212568 (-) True LOC110530107
TU98450 other downstream 30263 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 1600815 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 2213156 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 2472400 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 2557273 76521085 ~ 76523481 (-) True G86063
TU99200 other upstream 441886 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 790665 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 793803 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 1048687 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1847852 80940724 ~ 80941674 (-) True nphp1

Expression Profile