RNA id: XM_021612963.2


Basic Information

Item Value
RNA id XM_021612963.2
length 9583
RNA type mRNA
GC content 0.48
exon number 42
gene id LOC110530112
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79257290 ~ 79351404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCAGTGCAGGGGTGGCTTGCAGGGTGTTGTGGTTACTAGCTCTTCGAAACCAGAGAGAGGCTATTCTAAAAAATATTACGTTTAAGTACTTGATGGGGAAAGTCTCCATTACGTTACTACATTAATATTAATATGCAATGAATAACACAGTGCTAGACCTCCGCTCAGCTTTCCACCCCGGTTTATCAAAGGCATCGCCTGCCATTCGCCCATATGAGTAGGTTTATTTCGCTCGCTGCCCGGAATCCCTACTTTCATCCATCCATGTGAGATGCGGGAGATACCGTGGAGTCGCGGGGTGAGCGACTGTGTTTGGAAGCCCATAGATTGTTTGCCTCTGCACGGAAGTTAGCAGAGAATTTTCATTTTGGGGCGTCTTCACACTGACAGCGGCGAACCAGCTGTGGCTGTCAAGACAGGTCGTACTCTGTCAGAGTGATTTGCTGTGAAAATCCGTAATTCCTCACAATTGTTCGATTCTCGGATTTACTCCAACCAGATTTGTGAATGGAAGACAGACATATTGCATGTTCGGCCTATTTTCTACATGTTTGTTTGCTTTGAAATGTTTATTTGTTAGTTATTGTCTTGAGAAATATATAAAACCGCAGTAACTATGGCTGATGTTACGGTTAAGGATTAGTGTGCGGATTATATTTCAGCAGCAGCCGAATCCTCCAGCAGTTGTGttcatttgctgtttgtttattTGACTAGTACCTCTGTGTTCGTTGTCATTTGAAAAGGAACCCATTTTAAATGGATAAAAAAGCAATGTAATGTCATTTAGTGGAGTAAATTAACTTTTGTAAAACATggtaaaaggtaaaaaaaaaaaaaaattatgaggAAAATAATGAATTAATCCACAATCTAAATTAGAGGAGGCTAACATAATAACAATTCAGGCAACACCGTGTCTAAAGGCAAACATTATGAATGGGCCTGAGGTGTATCAGTCCTTGCCGGTGTTTTCTCAAAACGCAATGTGCACCTCTGCTGTAGGATGCGGGAATTAAGCTGTTTATGATAGGCTACATATAGGAAAATGTAATCTGTTAGGATTTTTCTCATTTAATCAGTGAGGGGCTCATAAGGTTTGCACGTGCATGTCAGTGATCCGTGGTTGTGGTGCAGCCTACTGTAGGGTGGAATAATTCACTAAACTAACAAATTGTCAGATATCATGGCGGATCGGACTGCTCCGCATTGCCAACTGAGATTAGAATGGATCTACGGGTACAGAGGGCATCAATGCCGAAACAACCTGTACTACACCGCTGGCAAAGAAGTGGTCTATTTCGTGGCTGGCGTCGGCGTGGTTTACAATACCAGAGAACACACTCAGAAGTTTTACCTGGGCCACAACGATGACATTATAAGCCTCGGCCTTCATCCTGAGAGGTCTCTGGTGGCAACAGGTCAGGTAGGGAAGGAACCCTACATCTGTGTGTGGGACACCTTCAGCGTACAGACCATCTCTGTCCTCAAGGACGGACACTCCCATGGAGTGGCTTGCCTGGCCTTCAGcgcagatggacagCGGCTGGCCTCTGTGGGGCTGGATGGCAAAAATACAGTGTGTGTTTGGGACTGGAAGAAAGGAAAGATTCTGGCCACTGCGACAGGACATTCAGACAGGATCTTCGATATATCCTGGGATCCCTTTCAGCAGAACCGGCTGGTGAGCTGTGGGGTAAAGCACATCAAGtTCTGGGCTCTCTGCGGGAACGCCTTGACGCCAAAACGGGGTATATTCGGGAAGACGGGGGACCTACAGACCATTCTGTGTGTTGCGTCAGCTAAAGATGATGTCACGTACTCTGGAGCGTTGAATGGGGATATCTACGTGTGGAAAGGACTGAACCTAATGCGCACAGTGCAGGCCGCTCACGGGGCTGGGATCTTCAGCATGTATGCCTGTGAGGAGGGCTTCGCGACGGGGGGGCGTGACGGCTGTGTCAGGCTCTGGGACGTGGACTTCAAGCCTATCACTAAGATCGACCTTCGGGAAGCTGAGCAGGGGTATAAAGggctgtCTATCCGTAGTGTGTGTTGGAGGGCAGACCGTATCCTGGCGGGGACACAGGACAGTGAGATCTTTGAGGTGATGGTTCGGGATAGAGACAAGCCTCTGCTCATCATTCAGGGTCACTGTGAGGGAGAGCTCTGGGCTCTGGACGTCCACCCCAAGAAACCACTCGCTGTGACCGGCAGTGACGATCGATCTGTACGGTTGTGGAGCCTGGCAGACCACACCCTGATAGCTCGCTGTAACATGGAAGAGGCTGTCCGCAGTGTGGCCTTCAGCCACGATGGCTCTCAGCTTGCTCTTGGCATGAAGGACGGCTCCTTCACTGTGCTCCGAGTCAGggaCATGACGGAGGTGGTACACATTAAAGACAGGAAGGAAGTGATTCATGAGATGAAGTTTTCTCCGGATGGCAGCTACCTGGCCGTGGGCTCTAATGACGGCCTGGTGGATGTGTACGCCGTGGCGCAGCGCTACAAGAAGGTGGGTGAGTGCAACAAGTCCTCCAGCTTCATCACCCACCTGGACTGGTCCATCGACAGCAAGTTCCTCCAGAGCAACGACGGTGCGGGAGAACGCCTCTTCTACAGGATGCCAATTGGGAAGCACCTGACCACTAAGGAGGAGGTAAAAGGGATCCACTGGAGCTCGTGGACAAGTGTGATTGGTCCAGAGGTGAGTGGGATCTGGCCCAAGTACACCAACATCAGTGACGTAAACTCTGTGGACGCCAACTACTGCAGCGCTGTGCTGGTTGCTGGAGATGACTTTGGCCTGGTCAAACTGTTTCGCTTCCCCTGCCTAAAGAAAGGGGCAAAATTCAAAAAGTACATTGGCCACTCGGCCCACGTGACCAACGTGCACTGGTCTCACGACCTGCAGTGGGTGTTGACCACCGGCGGGTCCGACCATTCTGTGTTCCAGTGGAAGTTCCTGCCTGAGGGCATCATGAATGGAGGACTGGAGACCAGTATACCACAAGATGGCCATGCAGACTCCAACAGTGAGGAGTCTGACTCTGATGTGTCTGATGTCCCGGAGCTGGACTCTGATATCGAGCAAGAGACCCAGATCAACTACGACCGACAGGTGTATAAGGAAGACCTTCCCCAGCTGAGGctgcagagcagagagaagaagCAGCAGGTCGGCTCCCTGAAACGCCAGAGGGGCCCAGACGAAGCCCTTCGTCTGAAGTTTGTCCACGGgtaCCGTGGCTACGACTGCAGAAATAACCTTTTCTACACCCAGGCTGGGGAGGTCGTGTACCATGTGGCAGCGGTGGGCGTGGTCTACAACAGAGAGCAACACAGTCAGCGGTTTTACCTGGGCCACGATGATGACATTCTCAGTCTGACTGTACACCCACTCAAAGACTATGCAGCCACTGGAcagGTTGGCAGGGATCCAGCCATCCATGTGTGGGACATCCAAACCCTGAAGTGCTTCTCCCTGCTCAAGGGCTTTCACCAGAGAGGAGTGTGTGCTCTTGACTTCTCCGCGGATGGGAAGAGCCTGGTCTCAGTGGGCATTGATGATCACCACTCTATCATATTGTGGGACTGGAGGAAGGGCGAGAAGCTGGCCACTGCAAGGGGACACAAAGACAAGCTGTTTGTGGTGAAGTGTAATCCTAGCCTCATGGACAAGCTGGTGACAGTGGGAATCAAACACATCAAGTTCTGGCAGCATACAGGTGGAGGCCTGATGTTCCAGCGAGGCGTCTTTGGGAACCTGGGGAAGCTGGAGACAATGATGTCAGTGTGTTATGGTCGGACAGATGAGCTGGTATTCTCTGGAGCTTCCACGGGGGACATATATGTCTGGAAGGAGCCTGTGCTGCTGAAGACCATCAAGGCCCACGACGGACCTGTGTTCGCCATGTACTCCCTGGACAAGGGCTTTGTGACAGGTGGGAAGGACGGAGTAGTGGAGCTGTGGGACGACATGTTTGAGAGGTGCCTGAAGACATACGCTATCAAGAGAGCAGCCCTCTCCCCTGGATCTAAAGgtcTGCTCTTGGAGGACAACCCCTCCATTCGTGCCATAACTCTGGGACATGGACACATCCTGGTGGGAACCAAGAATGGAGAAATACTTGAAATCGACAAGAGTGGACCCATGACCCTGctagtccagGGTCACATGGACGGCGAGGTGTGGGGTCTTGCTGCTCACCCCCTGCTTCCCATATGTGCCACAGTGAGTGATGACAAAACTCTGAGGATATGGGAGCTCTTCACTAACCACCGCATGGTGGCAGTTCGCAAACTTAAAAAAGGTGGAAGATGCTGTGCCTTCTCCCCTGATGGGAAAGCCTTAGCGGTGGGCCTCAATGATGGTAGTTTCCTGGTGGTGAACTCTGACACCCTGGAGGACCTGGTGTCCTTTCATCACAGGAAGGAGTCTATCTCTGACGTCAGGTTTTCACAGGACGCTGGTAAATACCTCGCTGTGGCCTCTCATGATAACTTTGTGGATATCTACAATGTGCTGTCCAGTAAGAGGGTGGGAATCTGTAAAGGAGCTTCAAGCTATATCACTCACATAGACTGGGACTCTCGTGGTAAATTGCTGCAAGTAAATTCAGGTGCCAAAGAGCAATTATTCTTCGAAGCCCCAAGAGGGAAGAGACAAACCATAAGAAATTCTGAGATAGAGAAGATGGAGTGGGCTACCTGGACGTGTGTCCTGGGCCCCACCTGTGAGGGGATCTGGCCCACCCACAGTGACATCACAGACATCAACGCCGCCTCACTCACCAAAGACAAGAAGCTGCTAGCCACCGGAGACGACTTTGGCTTCCTCAAGCTCTTCAGCTATCCAACCAGGGGTCAATATGCCCGTTTCAAGAAGTACGTGGGCCACAGTGCCCATATAACCAACGTGCGATGGGCACAAGATGACGCCACGCTACTGACGCTGGGCGGAGCTGACACAGCACTGATGATTTGGAGCCTGGAGAGAACCGGAGAGGGTCACAGGGAGAACCCTGTGGACAGCGAGGAGTCAGATGATGACATTGAGGAGGACGGAGGGTATGACAGTGATGTGGCAAGGGAGAACAGCATCAACTACACCACTAAGATCTATGCTGTCAGCATCCGGGGTATGTGTGGCATCAAACCCCACCAGCAACTGAAGGAGGTGTCACCGGAGGAAAGGCCACCTGTTAGCCGAGCTGCTCCCCAACCAGAGAAGTTGCAGAAGAACAGTATCACCAAAAAGAAGAAGCTTGTCGAGGACCTGGTTCTGGACCACGTGTTTGGGTTCCGGGGCTTTGATTGTCGTAACAACCTTCACTACCTCAACGACGGCGCCGACATCGTCTTCCACACAGCAGCTACGGCCATGGTGCACAGCCTCTCCACTGGGACTCAGAGTTTCTACTTGGAGCATACAGACGACATCCTCTGTTTGACCGTCAATCAACATCCCAAATACAAAAATGTCATCGCTACAGGACAGATTGGTGAAGTGACAGACCTGCCAGGCACCACCCCCTCCATCCATGTGTGGGACGCCATGAGTAAACAGACGCTGTCCATCCTGCGTTGCTCTCACGCCAAGGGTGTGGGCTACGTCAACTTCAGCGCCACGGGAAAGCTGCTGCTCTCTGTGGGGGTGgagcctgaacacaccatcactgTGTGGCGCTGGCAGGAAGGTGCTAAAGTGACCAGTAAAGGTGGCCATCCAGACAGGATCTTCGTAGTTGAGTTCCGGCCAGACTCCGACTCTCAGTTCGTGTCTGTTGGGATCAAGCACATCAAGTTCTGGACACTAGCTGGAGGCTCTCTCATGTATAAGAAGGGAGTGGTGGGCTCAGTGGAGGACGGCAGGATGCAGACCATGTTGTCTGTGGCCTTTGGTGCAAATAACCTAACATTCACAGGTGCTATAAATGGGGATGTGTACGTGTGGAGAGACCACTTCCTGCTTCGTGTCGTGGCTAAAGCCCACACCGGGCCAGTGTTCACCATGTACACCACACTGAGGGACGGCCTCATCGTCACAGGGGGCAAGGAGAGGCCAACAAAGGAGGGCGGTGCAGTGAAACTGTGGGACCAGGAGATGAAGCGTTGCCGAGCGTTCCAGCTGGAGACGGGCCAAACTGTTGAGTGTGTGAGGTCCGTCTGTCGGGGAAAGGGTAAGATTTTGGTAGGTACAAAGGATGGTGAGATCATTGAGGTGGGAGAGAAGAACGCTGCGTCCAACATCCTGATCAACGGTCACATGCAGGGCGAGATCTGGGGCCTGGCCACCCACCCCTCTAAAAACCTGTTCATCTCCACCAGCGACGACAGCACCATCCGCATATGGGACCTGGACGACAAGAAACTGCTGAACAAGGTGAGCCTGGGCCACCCAGCCAAGTGTGCCAACTACAGTCCTGATGGTGAGATGGTGTCTGTGGGCATGAAGAATGGGGAGTTCATCATCCTCCTCACCAACTCACTCAAGATGTGGGGCAAGAAACGAGACCGCAGTGCTGCCATACAGGACATCAGGTTCAGTCCAGACAAACACCTCCTGGCAGTGGGCTCAGTGGAGAGTACGGTTGACCTGTATGACCTTACATTGGGCCCCACACTCAACCGCGTGGGCTACTGTAAGGACATCTCCAGCTTCGTTATCCAGATGGACTTCTCTGCAGACAGCAGGTTCATCGAGGTGTCCACAGGAAACTATAAGCGCCAGGTGCATGAGATGCCTTCTGGGAAAATGGTAACAGAACAGACTGTGATTGAGAGGATCACCTGGGCCACCTGGACCAGTATCCTGGGAGATGAGGTGCTGGGGATCTGGCCACGGAATGCTGATAAGGCTGACGTCAACTGTGCCTGTGTCTCCCACGCCGGCCTCAACGTGGTCACCGGGGACGACTTTGGACTGGTCAAGCTCTTCGACTTTCCCTGCACtgagaagtttGCCAAACACAAGCGTTACTTTGGGCACTCGGCACACGTGACCAACATTCGCTTCTCCTATGATGATAAATATGTGATCAGCACTGGAGGAGACGACTGCAGTGTCTTTGTGTGGAAATGCCTGTAAACCGGAGCTTTTTCTCCACAACCATCCACTAACATGCACCCAGACTCCTTAGCCCACCGCAGTAAGTCTTGGATTCCGACAGGAATGCAGCCAGGATCCCAAAGCCTCAAGTGTCTGGCTGCGGTCTACCTTTTTGCCTGCAACTGTCTCCCCATTCTTAGAACAACACCTGGGGATGGGCAATACGCTAATCACTGTACTATTAATTCAAGTCTAAGCATTAGGCAGAGCAGGTAGCTCCTTTTCTAACAGAAACCACTTTGAAGTAGATTTTTTTGCCACTAGAAAATGTTTGACTTTCTGGCCTAACAAGAAATGGCAGTGTTTACATTCACATCTGCTTTCAATGAAGGCAGGTTGCCATGCCAGCTATTGATTTATAATGAAACCATTGATAATGCCTGGGATTCAATCAAATCGCACATGGTTGACAATGCAGATttgaaaggcaatgttcccgcgtttGCGGCGGAGATTGCATTCACAGTAAATGCTGCCTATGTCGGCTCAATCTGAAATTACCTTAATTTCTATTGCGCAATCTGTATCGCTACAGCAATAGATTGAAAATAGCCCTAAATCCTGCCCAGTGTAGAGGATAaaagtttttttccccccataaTTCATTTGAAAGTATTAATATCCTTAAGTGCCTTTATGAATATTTCTACTTGTTATATTTTTTTGCAGTTTCACGTTTGAAATTATTTTGTACACCTCTGGTGCTATTCGATTGTAAAGTTTCTCATTCAATCTGCAGAAAGGGGCATTGGTTTGCTGCCGTTTATGCATACAACATCCAAAGTATGATGAGATGTAACATGTGACATAGTAAGTTATAATAGCTCTATTGAAAATATTTAAATGTTACTGTGATCTGACGATCAATTTTCAGTTTGTGGTTGTTACAAAAAAGATTAGGAAGCATTCTTAAAATGCTTTTAACTATTGTTAAAATGTTACTTAAATTTTGTGAAATATCTTGGTGAAACATGCTTCCATATAACCATTGTGAAAAGATTCAACAAAAATAATGTTAATAGAACTAGTACTGAAGCGTTACCGTATGTTTCAACATTCACTTCCAGTAAGGGATATCAACTGGGTGGCTTACATTTagatttgtcatttagcagatgctcttatccagggcGATTTACATTCATCTTAAAATAGTTAGGTGAGACGTCACAATCGTATAGAGTACATTTTTCCTAAAATTATTTATCAAAGTCAGTGCTAAAAGGCTAAGTGAAATAGACAGTCCAGGAGACGGTGACCTGTCACACCAAAGCGGACTATACAGTCTTACTCAAGCCCTGAAcctggtttcccaaaagcattttaaggcaaatgcttttgggaacacAGGCCTTGGTCTACTGTTGAACTCTTAGTCGTCTCGTCAATCCGCATCACGGAAATTCAGTTTTACAGCGTGATCGAAATTTAAAGACAATGTTCCCGCTTTAGCGGAGaccgcattcacggtaaacgctgcacgTCGGCtcagaaatgacctttacatttctattgcaGAATGTGTAACACTTTAGCGTTACAGAATGAATAGCGCTCTTAGCCTTGCTGTCTTTAGCCTGTCAGTCTCACTAATGTTTAGCTAGCAGTGTGGCAGCAATATGTTACTATATGTGCATTCTTTAAGCAGTATGGATTCCTGTTTACATATTTTTATTCATTTAATTTTTGTACAAGACAGATGGTCCAGATATCGTAAAAGtatttgtatcatattgtacattttttttaaaatgctcAAATGCAtgaatttattttttaatcaaaCATCTGTGGTGATTTTATCGTATGAATGACAATGTTTTATACAAATTTATTGTGTACATGTGCAAGTATTAAGTGTATGGAAAGATTAAATGAGAATACCGAATTTGTCCGCAAACACGTGGGTATGACTCAAGGCATTGAGCTTTTTTCAGTCTCCCAACATTCCTTACACTTTGTATTCACTGgattagagcgtctgctaaacgTAATTTCACTGGCAATCAAATAATTTAAAAATGCATTTACGAAATTGACAGACATTACGTGCCAAATGTGTACTACATCATATACTGGAAGTATTTACATTCCTACATGCTATTTAGAACAGCTCAGCAAACAGTCCATTCTTATGGGATGGAAAATGTTAGCGACATCCTTTCCTATAGGACCATGGGGTTGTTTTAGGTAGTTTCTGTAACTATATCCGTGGCTACTTTTCTAAATCCTCCAGCTTGCCTGAGAGAAAAAACATCCACATTAATTCATCTATAAGCTTTATTGTAATTGTTTCTATTTCACAATGCATTCCACAAACAGTTCTCATAAGAGTTCATTACAATTGTATGAAGTATCATTCACAATTACTTGCATAAACAATGCTTGAAGTTTCCATGTTACATAATTTTGCAGCTTTAGATATTGGGTCCACAGAtggtatgtttatttttttttgtcttaagtTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98569 lncRNA downstream 11810 79245195 ~ 79245480 (-) True G89523
TU98556 lncRNA downstream 30098 79226984 ~ 79227192 (-) True G89510
TU98555 lncRNA downstream 30382 79226701 ~ 79226908 (-) True G89509
TU98471 lncRNA downstream 179427 79072680 ~ 79077863 (-) True G89436
TU98026 lncRNA downstream 356272 78899319 ~ 78901018 (-) True G89021
TU98606 lncRNA upstream 1373 79352774 ~ 79353088 (-) True G89560
TU98682 lncRNA upstream 151060 79502461 ~ 79502674 (-) True G89636
TU99180 lncRNA upstream 155315 79506716 ~ 79506944 (-) True G90063
TU99187 lncRNA upstream 167682 79519083 ~ 79519485 (-) True G90070
TU99192 lncRNA upstream 176173 79527574 ~ 79527832 (-) True G90074
XM_021612927.2 mRNA downstream 44722 79209864 ~ 79212568 (-) True LOC110530107
XM_021612916.2 mRNA downstream 48091 79207502 ~ 79209199 (-) False LOC110530099
XM_036986226.1 mRNA downstream 48483 79207597 ~ 79208807 (-) True LOC110530099
XM_021612876.2 mRNA downstream 147953 79093139 ~ 79109337 (-) True LOC110530078
XM_036986192.1 mRNA downstream 147981 79093139 ~ 79109309 (-) False LOC110530078
XM_021612985.2 mRNA upstream 10196 79361597 ~ 79448242 (-) False LOC110530138
XM_021612995.2 mRNA upstream 10196 79361597 ~ 79495170 (-) True LOC110530138
XM_036986287.1 mRNA upstream 261236 79612637 ~ 79691783 (-) False LOC100136270
XM_021613015.2 mRNA upstream 261236 79612637 ~ 79692579 (-) True LOC100136270
XR_005052966.1 mRNA upstream 510680 79862081 ~ 79870881 (-) False LOC110530200
TU98450 other downstream 206799 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 1777351 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 2389692 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 2648936 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 2733809 76521085 ~ 76523481 (-) True G86063
TU99200 other upstream 183357 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 532136 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 535274 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 790158 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1589323 80940724 ~ 80941674 (-) True nphp1

Expression Profile