RNA id: XM_021612995.2


Basic Information

Item Value
RNA id XM_021612995.2
length 8919
RNA type mRNA
GC content 0.53
exon number 35
gene id LOC110530138
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79361597 ~ 79495170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCACTGACGAGGTGGCCTTGCGCAGAACTCACTTGGTGCGTGGGACCTTGCGGACGAAGTCTCCGCCCATTGTCGAGATTGTGCTGCAGTTGCAGCAAGAAAGGTGGTGAGGAGGACTCCATCAGGATTCTGCGTTTTTCTCGTCCAGTGTCTGGCTGCGTGCTGTTTGCAGGCTTTTCCGAAATTGTTGATTGGGCTTCATGTGAAGCGGCCGATGTGTGACAGTTGAAGGGTCAGGATGACATCCGTAGCCGCTGATTTCGACCACATGGAGatccagcagcagcagtatagtagcgACACAGTCAACAAGCGCTGGGATGTTGACGAGTGGGACAACGAGAACAGCTCGGCCAGGCTGTTTGAACGCTCCCGCATCAAGGCCTTGGCAGATGAGCGTGAGGCGGTGCAGAAGAAGACCTTCACCAAGTGGGTCAACTCCCACCTAGCCAGAGTGTCCTGCAGGATCACTGACCTCTATATGGACCTGAGGGATGGACGCATGCTCATCAAACTACTGGAGGTCCTCTCTGGGGAGAGACTGCCCAAGCCCACTAAGGGGCGCATGCGTATCCACTGCCTGGAGAACGTGGACAAGGCCCTGCAGTTCCTCAAGGAGCAGAGGGTCCATCTGGAGAATATGGGCTCCCACGACATTGTCGACGGCAACCACCGCCTCACCCTCGGCCTAATCTGGACCATCATCCTCCGCTTCCAGATCCAGGACATCAGAGTGGAGACTGAGGACAACAAGGAGAAGAAGTCTGCTAAAGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGGATATCCCAACGTGAACATTCACAACTTCAGCACCAGCTGGAGAGATGGCATGGCCTTCAACGCCATCCTCCACAAACACAGACCTGACCTAATAGACTTTGACAAGCTGAAGAAGTCCAACGCCCACCACAATCTGCAGAATGCCTTCAACCTGGCAGAGCAACACCTGGGCATCCACAAGCTGCTGGACGTAGAGGatATCAGCGTGGACCACCCGGATGAGAAGTCCGTCATCACCTATGTTGTGACCTACTACCACTACTTCTCCAAAATGAAGGCTCTGAAGGTGGAGGGAAAACGTATTGGGAAGGTGCTGGACAATGCCATTGAGACAGATAACATGATTCAGAAATATGAGAGTCTGGCCTCTGACCTCCTGGAATGGATTGAACAGACCATCATCATCCTCAACAACCGCAAGTTTGCCAACTCCTTAGTGGGGGTGCAGCAACAGCTTCAGGCCTTCAACACCTACCGTACCGTGGAAAAGCCCcccaaGTTCACAGAGAAGGGCAACCTGGAGGTTCTCCTCTTCACCATTCAAAGTAAGATGAGGGCCAACAATCAGAAGGTCTACATGCCACGGGACGGCAAACTCATCTCAGACATCAACAAGGCCTGGGAGAGGCTGGAGAAGTCTGAGCATGAGAGGGAGCTGGCGCTGAGGACGGAGCTTATTCGTCAGGAGAAACTGGAGCAGCTGGCCCGCCGCTTCGATCGCAAGGCTGCCATGAGAGAGACCTGGCTGAGTGAAAACCAACGCCTCGTCTCGCAGGACAACTTTGGCTTCGACCTGCAGGCAGTGGAGGCTGCCACCAAAAAGCATGAGGCCATTGAGACGGACATCGGCGCCTACGAGGAGCGTGTGCAGGCTGTGCTCTCTGTGGCCAAGGAGCTGGAGGCGGAGAACTACCATGACATCAAGCGCGTGACTGCGAGGAAGGACAATGTGCTGCGTCTGTGGGAGTACCTGCTGGAGCTGCTGAAGGCCCGGCGCATCCGGCTGGAGATGAACCTGGGCCTGCAGAGGGTCTTTCAAGAGATGCTCCACATCATGGACTGGATGGACGAGATGAAGATGCTGCTGCTGTCCCAGGACTATGGGAAACACCTGCTGGGAGTGGAGGACCTGCTGCAGAAGCATGCTCTGGTGGAGGCTGATATCGCCATCCAAGCCAACCGCGTCAAAGCCGTCAACAACAACGCTCAGAAGTTCGCCATCGACGCAGAGGGCTACAAGCCCTGTGACCCCCAGGTGATCCGAGACCGCATGGCCCACATGGAGTTCTGCTACGCAGAGCTGAGCCAGCTGGCCGCCGATCGCTGCGCCCGCCTGGAGGAGTCCCGCCGCCTCTGGAAGTTCTTCTGGGAGATGGCCGAGGAGGAGGGCTGGATCCGGGAGAAGGAACAGATCCTGTCCTCGGAGGACTGTGGCAAGGACCTGACTGGGGCCGTGCGCCTGCTGAGCCAGCATCGCGCCTTCGAGGACGAGATGAGCGGTCGCGCTGGCCACTTGCAGCAGACCATcaaacagggagaggagctggtggcCGCCGACCACTTCGGAGCCGACAAGATCTGCAAACGCATCCAAGACATCCAGGCGCAGTGGGCGGCCCTGGAGGGGCTGTCTGCAGTCAGGAAGGCCCGGCTGGAGGAGGCCTGCAACCTGCACCAGTTCCAGGCTGACGCCGATGACATCGACGCCTGGATGCTGGATGTTCTCCGCATCGTGTCCAGTGCTGATGTTGGCCACGACGAGTTCTCCACCCAGGCCCTGGTCAAGAAGCACAAGGACGTGGCCGAGGAGATCACCAGCTACCGACCAGTCATCGACGCCCTGCACGAGCAGTCCAAAACCCTACCCAAGGAGCaaactggctcaaaggaggtgcAGGGGCGCCTGGCAGGCATTGAAGAGCGCTACAAGGAGGTAGCTGAGCTGACCCGGCTGAGGAAACAGGCCCTGCAGGATGCCCTGGCCCTCTATAAGATGTTCAACGAGGCGGCCGCCTGTGAGGTGTGGATCGATGAGAAGGAGCAGTGGCTCAACAGTATGGAGATACCAGAGAAACTGGAAGATCTGGAAGTGGTTCAGCACAGGTTTGAGAGTCTGGAGCCAGAGATGAACAACCAAGCATCCCGCGTTGCTGTGGTGAACCAGATTGCTAGGCAACTCATCCACAACGGTCACCCCAGTGAGAAGGAGATCAAAGCCCAACAGGACAAACTCAACACCAGATGGAGCCAGTTCCGTGACCTAGTTGACCTGAAGAAAGACTCCCTCAACTCAGCTCTGGGCGTGCAGAACTACCACCTGGAGTGCAATGAAACCAAGTCGTGGATCCGTGAGAAGACCAAGGTTATCGAGTCCACCCAGGAGCTGGGCAACGATCTTGCCGGGGTCATGGCCCTACAGCGCAAACTCACCGGCATGGAGCGTGACCTGGCTGCCATCGAGGACAAGCTGGGAGAactggggaaggagggggagtgCCTGGCGACTGAGCACCCTGACCAGGCCCAGGGCATCATGGGTCGTCTGGGGGAGATCACAGGGGTGTGGGATGAGATGAAGGGCACCTTGAAGAATCGCGAGGAGTCTCTTGGCGAGGCCAGCAAGCTGCAGCAGTTCTTCCGGGAGCTGGATGACTTCCAATCATGGCTGTCCAAGACCCAGACGGCCATCGCTTCAGAAGACATGCCCAACACACTGACTGAGGCCGAGAAGCTTCTGGCGCAGCACGAGGGCATCAAGAACGAGATCCGCAACTACGAGGAGGACTACCAGAAGATGAGGGACATGGGTGAGATGGTGACCCAGGGCCAGACGGACGCCCAGTACATGTTCCTGAGGCAGAGGCTGCAGGCCCTCGACACGGGCTGGAACGAGCTGCACAAGATGTGGGAGAACCGTCAGAACCTACTGTCCCAGTCCCATGCCCACCAGCTGTTCCTTAGGGACACCAAGCAGGCTGAGGCCTTCCTCAACAACCAGgaGTATGTGCTGGCCCATACAGAGATGCCCAGGACTCTGGAGGGGGCGGAGGGAGCCATTAAGAAGCAGGAGGACTTCATGACCACCATGGACGCCAACGAGGAGAAGATCAAAGCCGTGGTGGACACCGGACGCAGGCTGGTCAGCGATGGAAATGTCAACGCTGACCGCATCCAGGAGAAAGTGGACTCTATCGATGAGAGacatAAGAAGAACCGCATGATGGCCAGTGAGCTTCTCTGTAAGCTGAAGGATAACAGAGACCTGCAGAAGTTCCTCCAGGACTGCCAAGAGCTCTCCCTGTGGATCAATGAGAAGATGCTCACAGCTCAGGACATGTCGTACGACGAAGCCAGAAACCTCCACAGCAAATGGCTCAAACACCAGGCGTTCATGGCCGAGCTGCAGTCAAACAAGGAGTGGCTGGACAAGATCGAGAAGGATGGAATGCAGCTGATGGCTGAGAAGCCGGAGACCGAGTCCATGGTAAAGGAAAAGCTGGCAGCGCTCCATAAGATGTGGGATGACCTGGAGTCCACCACCCAGACCAAGGCCAAGTGTCTGTTTGATGCCAACAAGGCCGAGCTGTTCACCCAGAGCTGTGCCGACCTAGACAAGTGGCTGGTAGGAGTGGATGGACAGATCCAATCAGACGACTACGGCAAAGATCTGACCAGTGTCAACATCCTGCTCAAGAAACAACAGATGCTGGAGAGCCAGGTGGAGGTGCGtcagaaggaggtggaggagctgcAGAGCCAGGCCCAGGTCCTCAGCCAGGAGGGGAAGGATACGGACGAGGTGGACGGCCAGCGCCGCATCGTGGAGAAGAAGTTCCAGCAGCTGCTGGACCCTCTACGGAAGAGGAAGGGAAACCTCATGGCCTCCCGCGAGATCCACCAGTTCAACAGAGACATGGAGGATGAGATCCTCTGGGTTGAAGAGCGAATGCCACTTGCAATATCAACAGACCACGGAAACAACCTGCAAACAGTCCAGTTACTCATCAAGAAAAACCAGACCCTGCAGAAGGAGATCCAGGGCCACCAGCCCCGTTGTGATGACATCTTTGAGCGGAGCCTGCAGGTCCTCAAGGATGATGACGACAGCCTCAGCGGCGAGGGGATCCACCAGCGGCTGGCCGACCTGCGGCGCCTGTGGGCCCAGATTCTGGAAGAGACGGGCAAACGCCATGGACGCCTGGAGGAGGCCCACATGGCCCAACAGTACTACTTTGATGCTGCTGAAGCCGAGGCCTGGATGAGCGAGCAGGAGCTCTACATGATGTCAGAGGAGAAAGCCAAGgatgagCAGAGCTCTGTGGCCATGTTGAAGAAGCACCAGATACTGGAGCAGGCTGTGGAAGACTACGCTGAAACTGTCCACCAGCTGTCCCAGACAAGTAGAGGCCTGACGGCCGCCGGACACCCTGAAAGTGAGCGGATCGGCATGCGTCAGTCCCAGGTGGATAAGCTGTATGCAGGGCTCAAGGACCTgtcggaggagaggagggggaagctGGACGAGAGGTTCCGTCTGTTCCAGCTCAACAGGGAGGTGGATGACCTGGAGCAGTGGATCGCTGAAAGGGAAGTAGTGGCTGGGTCACATGAGCTGGGACAGGACTACGAACATGTCACGATGCTTCAGGAGCGTTTCCGTGAGTTTGCTCGTGACACGGGCAACATCGGTCAGGAGCGTGTGGATACCGTCAACCAGTTGGCGGATGAACTCATCAACTCAGGCCACACCGACGCGGCAACAATCGCGGAGTGGAAGGACGGGCTGAATGAAGCGTGGGCCGACCTGCTGGAGCTAATCGACACACGCACGCAGATCCTGGCGGCTTCCTTTGAGCTGCATAAGTTCTACCATGACGCCAAGGAGATCCTCAACCGCATCCTGGACAAACACAAGAAGCTGCCTGAGGAGCTGGGCCGAGACCAGAACACAGTGGAGACCCTGCAGAGGATGCACACCACGTTTGAACACGACATCCAGGCACTGGGGACACAGGTGAGGACGTTGCAGGAGGATGCTGTGCGTCTGCAGTCTGCCTACGCCGGAGACAAGGCTGATGACATccaaaagagagagggtgaggtgcTGGAGGCCTGGAGGACCCTGCTGGAGGCCTGCGACGGCCGCAGGGTCAGACTGCTCGACACCGGCGACAAGTTCCGCTTCTTCAGCATGGTGCGAGACCTCATGCTCTGGATGGAGGACGTCATCCGCCTCATCGAGGCTCAGGAGAAGCCCAGGGACGTGTCGTCCGTGGAGCTCCTGATGAACAACCACCAAGGCATCAAGGCTGAGATCGACGCCCGCAACAACAGCTTCACCAACTGCATCGAGCTGGGCAAGTCCCTGTTGGCAAGGAAACACTACGCATTAGAGGAGATCAAAGAGAAGTTACTACAGTTGACAGACAAAAGGAAAGACATGATTGACAAGTGGGAAGACAGATGGGAGTGGCTAAGATTGGTTCTGGAGGTGCACCAGTTTGGTAGGGATGCGGGTGTGGCTGAGTCATGGCTGCTGGGACAGGAGCCGTACCTGTCCAGCAGGGAGATGGGGCAGAACGTGGACGAGGTGGAGAAACTCATCAAGAGACACGAGGCCTTTGAGAAGTCCGCTGCCACCTGGGAGGAGCGCTTCTCAGCGCTGGAACGGCTGACTACGATGGAATTACTGGAAGTGAGAAGACAgcaagaggaagaagagaggaagaggaatccACCACCTGCAGAGACCCAGACGGACGATGCATCGCCACAGCAGAGGGAGGGTGAGCAGGTGTCTCAGAACGGACTGCCATCGGACCAGGACTCCCCTCGGGACAACGGAGAGGAAAGTGACATCGTTAATGGGGTGGAGGAGCCCAGCCCAGGCGGGTCGCCCGGTGAAGCACGCAAGGTCAAGCCCAGCCAGGCTGCCACACTCCCGGCCAAGTCCCAGGACTCAGCCCCAGCCAACCAGATGGAAGGCTACCTGCACCGCAAACACGAGTGGGAGGGTCACAACAAGAAGGCATCCAGCAGATCCTGGCACAATGTGTATTGCGTGATCAACAACCGGGAGATGGGCTTCTACAAAGACCATAAGAGTGCCAGCCAGGGGATCCCTTACCACAACCAGATCCCCATCAGCCTGAAGGATGCTGCGTGTGAGGTCGCCCTCGACTACAAGAAGAAGAAACATGTGTTCAAACTGAAAGCTACAGATGGCAATGAGTATCTCTTCCAAGCCAACGAGGATGAGGAGATGAACTCGTGGATGGAGGCCATCTCCAGCGCTGCGTCCTCTGATAAGACCGAGATGACCCCCAGCAGCCATAGCACCCCCGCCTCCAGCCGAGCCCAGACCCTGCCCGCCTCCGTCGCCCTGGCAACTGAGTCCAGCCCTGGCAAGCGTGAGAAGGACAAAGAAAAGCGCTTCAGCCTTTTCAGCAAAAAGAAATAGACCCCTCAGCCCCCCAATGCcattcctctcatctcccctgctCCTCTTAAAGCCAGACTCCAGCATGCAAGCTCAGAGCCAAAACTCCACACTCTGTGCCTAACAATCCTACAGCTGGGCTCAGAGGTCAAATACAGTAtgccattttctttttttaagataaggaacaaacaaaaaaagatgaGAAATTATGTTACGGTAGACATGATGCTTTGGGCAGCTGACATTGTAAACCATCCATAATTCACCGCTGAAAAACAAGACAGGGTTTCCAGTTAagatttctttgtattttctctctgtttttctgctTTCTCATCCCCCTGCTTTTCACTTGTTGCTTTGGTGGTTTTTTCCCTGTTCTTTTTGTAATAGTATGTTGTTTCTAGGGTCTGGCCTCAGTTTTGTGAGGCGATCTTTGAAAGATGACATTCTTCTGAGTTGAAAAGCAAAGTCAGCGGTGCTTTGAACTGTGTGTATAACTTGTCTATAACAAACTATTAAAAACCAGTTTAATTTCACTTACTAATAAGCTCTACAACCATTAAGCTTCAATGTAGTCTCATTTTATCCCCTAAAACGTAGTATAACACATTCATTTGGATGAAAAGACGGGGGTTCATTTTCTCCATCACTGTGGCAAATTTCTGTCATATCGCTTCAggatattggactttcaagacGCAAATGgtacgttcaagacaactgggaactcagaaaaatatgaggtcaaatcatgacttcagtgatcttcaggtcggaactCTAGAAAGAGGCAGGTTGACATTCTTTTCTTTTTTtgacttcccagttgtcttaaacgcactgaagtcagagatttccgagttcccagttgttttgaacacagcCAAAGTGTCACTTGCCACATCATAATGTTCATGCAAAACACATCATGATGTGGCAATTTaaactttgcttcttgaaaggcCAATATCttaaaacttgactgctgacatacaaaacattttgggactttaTCAACTGTGGACTAATGAaataaataccaaaatatagtttttgggtggagttttcctttacgTTTGTCATGATTTTTTGTACAATGTTATCATATACTAGTCCGGCTCAAATTGCTAAGACCAGCCAGTATGTTGGATATCCATGAAGAACTAGAACACAGATTAACACAgattaatgaaaacattattCTGTTCTTTATTAAATTTGTTTTCCTACATATTTGAGTTGCATTATGTATGTTTAAAATGTATTGagcataaaaaaatgtatgtacaatACAATAAACACTTTAAGCATTGTTAAGTGGAAAAGTGAATTCTATAGCGTTTACTGGAATAAGTCTTGTCATGGGAAAATGGTTGCTTGCTTGTTGGCTATAGCACTGCATATTATCATTTTTGCTAAAAATCTCTGGCTATTTGATAAATAGTGTGCATTTCTCTGTCACTGTACCTATTGTAATGAAATATTTCTTCATATTGCACAATCAACAATGCCATGATGGGAGAAAGCTTGTTTTCCATAGCAGCTTCTCTAGGTATGTAGTTTAATATGGACCAAGGTCACAGGTAGATGGAACTGCACCAGTAGACTTTTACCCTCTCTGTTAAATATGTGCAAAACCATTAAATTGCTTTTAAGATGCTA

Function

GO: NA

KEGG:

id description
K06115 SPTB; spectrin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98606 lncRNA downstream 8509 79352774 ~ 79353088 (-) True G89560
TU98593 lncRNA downstream 42231 79318961 ~ 79319366 (-) True G89547
TU98590 lncRNA downstream 47764 79313420 ~ 79313833 (-) True G89544
TU98586 lncRNA downstream 58705 79302619 ~ 79302892 (-) True G89540
TU98578 lncRNA downstream 84009 79277243 ~ 79277588 (-) True G89532
TU98682 lncRNA upstream 7291 79502461 ~ 79502674 (-) True G89636
TU99180 lncRNA upstream 11546 79506716 ~ 79506944 (-) True G90063
TU99187 lncRNA upstream 23913 79519083 ~ 79519485 (-) True G90070
TU99192 lncRNA upstream 32404 79527574 ~ 79527832 (-) True G90074
TU99194 lncRNA upstream 34053 79529223 ~ 79529514 (-) True G90076
XR_005052954.1 mRNA downstream 10193 79273232 ~ 79351404 (-) False LOC110530112
XR_005052955.1 mRNA downstream 10193 79273232 ~ 79351404 (-) True LOC110530112
XM_021612948.2 mRNA downstream 10195 79257290 ~ 79351402 (-) False LOC110530112
XM_021612956.2 mRNA downstream 10196 79257290 ~ 79351401 (-) False LOC110530112
XM_036986287.1 mRNA upstream 117467 79612637 ~ 79691783 (-) False LOC100136270
XM_021613015.2 mRNA upstream 117467 79612637 ~ 79692579 (-) True LOC100136270
XR_005052966.1 mRNA upstream 366911 79862081 ~ 79870881 (-) False LOC110530200
XR_005052965.1 mRNA upstream 366911 79862081 ~ 79870883 (-) False LOC110530200
XR_005052963.1 mRNA upstream 366911 79862081 ~ 79880384 (-) False LOC110530200
TU98450 other downstream 311106 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 1881658 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 2493999 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 2753243 76606682 ~ 76608354 (-) True G86132
TU94870 other downstream 2838116 76521085 ~ 76523481 (-) True G86063
TU99200 other upstream 39588 79534758 ~ 79535572 (-) True G90081
TU99325 other upstream 388367 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 391505 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 646389 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1445554 80940724 ~ 80941674 (-) True nphp1

Expression Profile