RNA id: XM_021613015.2


Basic Information

Item Value
RNA id XM_021613015.2
length 3087
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC100136270
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79612637 ~ 79692579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGAAgtccgactgggaaaaatcgaTTTGAACGTTCATCCAACTAGactttccaacctgaagatcactgacgtcatgatttgaccccGTATTTTTCCTAGTTGCCAGATGTTTTGAACGCAGCACTAGCTATTTAAACCAACTGTGTCGGTCAATTTGGTGAATGTCTTCATGTCATTTTTATTAATACAGAATCTTATTTCTTATCAACCACTAACATAACTGCAATTTCAGCAGAAAGTGGGTCTTGAATGTATCAGTCAGAGATACGTGATTTCATTAAATTAGCGGGGGGGGTTTTTAGCAAAAGAATGGTAtcttctcacctgaagttgtatGACGCCCTGAAATCCCTGGCTGTAAAACCATGTAAACAATATTTTTTCGGGATAGCCAAGAGCTGGATCACGATAAGATGATATACAGATCTGTGAATTTGTGCAGGCACGCGCAACTAAGAGGTTCTCGAAAGTTCAGTCGATTTGAAGGGTCCAAAATGGCGATGGATGGAATGACCACATCTCCATCAGGACTATCGTATCACAATGTTGGGGACTTTTACCCCAGAAAATTCGGTTCCAAGCCGGACGTGGTGCCGTCCGGGGTGACCGAGAGGAAAGTTGGTCCCCTGGATAAACCTGACATGGTGGCGGTGGACGTTATCAACGATTCAGATATCCCAATGCACAGAAAAAAGCATGAAAGTGACATGTTTGTGCTGGGTACTATACACCCATTCCGGAAGACGCACAGGTCCTTCTTTGGGAAACTCTCTCAAGAATTCCGCTTGGTGACTTCAGACAGACAGtcatGGAGAATCCTGGTGTTCAGCATGCTGAATGTCTTCTGTACTGGTTGTCTGCTGATGTGGTGCAGCTCCACCAACAGTATGGCCTTAACAGCATACACATACCTCACCATCTTCGATCTCTTCAGTCTGATCACCTGTCTGCTGAGTTCCTGGGTGGCCATGAAGAAGCCTAGTCAGCTCTTCTCGTTTGGGTTTAAGCGACTGGAGGTCCTTGCTGTGTTTGCCTCCACGGTGCTGGTGCAGCTGGGCGCTCTGTTCATCCTGAAGGAGAGTGTGGAGAGATTCGTGGAGCAGCCTGAGGTGCACACgggtcgTCTGTTGGTGGGGACCTTTGTAGCTCTGTTCTTCAACCTGCTAACTCTTCTCTCTGTGAAGAACAAGCCCTTTGTCTACGTCTCAGAAGCTGCCAGCACCAGTTGGCTCCAGGAGCATGTCGCAGACCTAAGTCGAAGTTTGTGTGGGATTATCCCTGGCCTCAGCAGTGTCCTCCTGCCTCGAATGAATCCATTTGTCTTAATCAACGTGGCCGGAGCTCTCTCACTCAGCATCACCTACATGCTCATAGAGATCAATAATTACAATGCTGTGGACACAGCCTCGGCGGTGGCCATTGGCCTCATGATCTTTGGCACCATGTATCCTATGAGCGTGTACAGCGGGAAGGTGCTCCTTCAGACCACTCCATCCCATGTCATCGGTCAGCTTGACAAATTGCTCAGAGAGGTCTCCACTCTGGAGGGGGTCCTGGAGGTCCGTAACGAGCACTTCTGGACGGTTGGCTTTGGCTCTCTGGCTGGCTCCGTCCATGTCAGAATACGCCGGGATGCCAACGAGCAGATGGTGCTGGCCCATGTGACCAACCGCCTCTTCACCCTCGTGTCCACGCTGACGGTTCAGATTTTCAAGGATGACTGGATCCGGCCTTCCCTCATGGCCGAGGCGCTCCCAGCCAGCACACTCAGACCCTCTGACTACGGGGGCCTGTCTAGCtttgtcccccctccccccaaacccTCGGAGGACATTAATCGTCTCACCTCCACCCCGTTTAAACCCAGCAGCCCGCCGCCAGAGTTCTCCTTCAACACCCCTGGGAGGCATGTCCACCCTGTGGTGCTCCCCAACACCCAGCCTCAAAGGCCTTACGGCATGGGCCTCAGCTACGGAGCCTCCCCCTACACCAGCATGCTCAACCAGGACCTAGCCCGGCCGGGGAtggggatagggatagggatGAACCTGGGAATGGGTGCAGGGATGCCTTCGTCACAAGGTTTCAGAACTGCCTTAGGTGCAGCGCCACAGCGATTTGGAAGCATCCCTGTCCCATCACAGTACAGCCAGTACAGACCCTGATGTTTAGAACATGAGGTATAGAAGTGGGATATTAGAGAGAAAATATTATGGTATTTATTTTTGATGGAACCAGGACATCCATTCTGACCATAGGTTGATTTTCTATCTTTGtatattttttgtattattcTTCGAAAAGCTAATGAGTTGGAAATGAACTGTAGGCCTGTGTTCTTTCTTTGTATACCAGTTCAAATGAAAAGTTATTCTGTTTGAGAATTGTGGAAGAGCTCTATTGCTTTTGTACCATAAATGTGTGCGTTAAACCATGAATTCACTTTCGTGCTCTTAGGACTTCAGTATTTGATTCAGTAACTGTTATTCCCTTGGTTGATGGCCATCACAAGATGGGAGTGATATTTTTAGGTAGAAAAAGTGACCTAATGAAGGGAAAATACATAATGGGGCAATACATACTCATGTTTTGCCCCATTATCTTCTGTATTAGAAGCATCACTTTGATACACTATAATGATTCCTGATGCTAACCTCATTGTGATGTATGTATTATACCTTCTACTATTTTATGGAAACAAATACGTACTGTATCATTTTCCAGTTCAGTATAGTCTACAATAAATTAAATGCAAACTCATGTAAAATCACTGTAATTGCCCTATTGTTTGTCACATATTTGAACTTTCCAGGTCATGTCTATGTTCGTTGAAAGACTCCAATGAGTTTGGTGACTCAGTGGGATGAGAATTGTCAGCTGTCTGCATTTTTAAAAATGCAGTTAGGCCTACTTTAATGTTCCAACATAATATTCCAATCGAAGCTTTAAGATTAAAAAACACTTTCCATGGGCTACCTGTTGAGATGTTGAGGGTGAATGGTGAAGAGTATCATAAATAAAATTGAAGCATATAGGAGATGATTGTCTGGCATGTAATAAACACATTCCTCTTGAATTTGTTTTTC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14693 SLC30A6, ZNT6; solute carrier family 30 (zinc transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99268 lncRNA downstream 7357 79605007 ~ 79605280 (-) True G90137
TU99263 lncRNA downstream 14164 79598110 ~ 79598473 (-) True G90132
TU99248 lncRNA downstream 32066 79580371 ~ 79580571 (-) True G90117
TU99235 lncRNA downstream 41609 79570814 ~ 79571028 (-) True G90104
TU99218 lncRNA downstream 54818 79557337 ~ 79557819 (-) True G90094
TU99311 lncRNA upstream 170857 79863436 ~ 79867775 (-) False LOC110530200
TU99403 lncRNA upstream 233636 79926215 ~ 79928905 (-) True G90260
TU99445 lncRNA upstream 268611 79961190 ~ 79989614 (-) True G90291
TU99420 lncRNA upstream 461252 80153831 ~ 80157631 (-) True G90271
TU99569 lncRNA upstream 492562 80185141 ~ 80185438 (-) True G90406
XM_021612995.2 mRNA downstream 117467 79361597 ~ 79495170 (-) True LOC110530138
XM_021612985.2 mRNA downstream 164395 79361597 ~ 79448242 (-) False LOC110530138
XR_005052954.1 mRNA downstream 261233 79273232 ~ 79351404 (-) False LOC110530112
XR_005052955.1 mRNA downstream 261233 79273232 ~ 79351404 (-) True LOC110530112
XM_021612948.2 mRNA downstream 261235 79257290 ~ 79351402 (-) False LOC110530112
XR_005052966.1 mRNA upstream 169502 79862081 ~ 79870881 (-) False LOC110530200
XR_005052965.1 mRNA upstream 169502 79862081 ~ 79870883 (-) False LOC110530200
XR_005052963.1 mRNA upstream 169502 79862081 ~ 79880384 (-) False LOC110530200
XR_005052962.1 mRNA upstream 169502 79862081 ~ 79910052 (-) False LOC110530200
XR_005052961.1 mRNA upstream 169502 79862081 ~ 79916796 (-) False LOC110530200
TU99200 other downstream 77065 79534758 ~ 79535572 (-) True G90081
TU98450 other downstream 562146 79049811 ~ 79050491 (-) True G89418
TU96006 other downstream 2132698 77478603 ~ 77479939 (-) True G87090
TU95290 other downstream 2745039 76866904 ~ 76867598 (-) True G86448
TU94946 other downstream 3004283 76606682 ~ 76608354 (-) True G86132
TU99325 other upstream 190958 79883537 ~ 79897840 (-) True LOC110530200
TU99326 other upstream 194096 79886675 ~ 79888180 (-) True G90190
TU99544 other upstream 448980 80141559 ~ 80142157 (-) True G90382
TU101177 other upstream 1248145 80940724 ~ 80941674 (-) True nphp1
TU101249 other upstream 1335329 81027908 ~ 81028612 (-) True G91941

Expression Profile